Prupe.1G262100_v2.0.a1

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
27072661 .. 27077450
4790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G262100.1

Sequence Viewer

Length: 1206 bp
ATGGCTCTATCCCGCCTCGCATCCTCTTCATCTTCCGGCTCCAATCTCCTCAAACCCCTCACCTCCGCCCTATCCTTCACCCCATCTCTCCGCCGTCCGATCTCATCCGCCGCTGATGACTCCACCACCCTCACGATCGAGACATCTGTCCCCTTCACCTCCCACAGGTGCGACGTGCCGTCCCGCACCGTCGAGACCACGCCCAATGAGCTCATGACGTTCTTCCGCGACATGGCGTTGATGCGCCGGATGGAGATCGCGGCCGACTCGCTCTACAAGGCCAAGCTCATCCGAGGGTTTTGCCATCTGTACGACGGCCAGGAGGCCGTCGCCATCGGCATGGAGGCCGCAATTACCAAAAAGGACTGCATCATAACCGCCTACCGTGACCATTGCACCTTCCTTGGCCGCGGCGGGACCCTTCTGCAGATTTTCTCCGAGCTCATGGGCCGCCAGGGTGGCTGCTCCAAGGGGAAAGGTGGGTCCATGCATTTTTACAAGAAGGACGCTGGGTTCTATGGCGGTCACGGTATTGTTGGGGCTCAGGTTCCGCTGGGATGTGGCTTGGCTTTTGGGCAGAAGTACTCCAAGGATGAAACGGTGACGTTTGCTCTGTATGGTGACGGTGCGGCCAATCAGGGGCAGTTGTTCGAGGCGCTTAATATTTCTGCGCTTTGGGATCTGCCTGCCATTTTGGTCTGTGAGAATAATCACTATGGAATGGGTACGGCAGAGTGGAGAGCAGCTAAGAGTCCATCATACTACAAGCGTGGAGATTATGTTCCTGGCTTGAAGGTGGATGGCATGGATGTATTTGCAGTAAAGCAGGCATGCAAATTTGCTAAGGAGCATGCTTTGAAGAATGGACCCATTATTCTTGAAATGGACACTTACAGGTACCATGGGCACTCCATGTCTGATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGCGTGAGACAGGAGCGTGATCCAATTGAAAGAATAAGGAAGCTGATATTTGCTCATGATCTAGCTACTGAGAAGGAGCTAAAGGATATTGAGAAGGAATTGAGGAAAGAAGTTGATGAAGCCATTGCTAAAGCCAAAGAAAGCCCAATGCCAGAACCCTCCGAACTCTTCACAAATATCTATGTGAAAGGCTGTGGGGCTGAGTCATTTGGAGCTGATAGGAAAGAAGTCAGAACTGTGCTTCCATGA

Protein Analysis

402

Amino Acids

44.12

Weight (kDa)

7.58

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011104)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 897
AccII CGCG 3 cut(s) 228, 260, 411
AclWI GGATC 3 cut(s) 687, 914, 971
AcoI YGGCCR 4 cut(s) 261, 316, 406, 630
AcsI RAATTY 1 cut(s) 836
AcvI CACGTG 1 cut(s) 944
AfaI GTAC 5 cut(s) 311, 584, 727, 899, 940
AfiI CCNNNNNNNGG 3 cut(s) 165, 232, 639
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 4 cut(s) 793, 859, 881, 986
AhdI GACNNNNNGTC 1 cut(s) 178
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 4 cut(s) 318, 453, 784, 922
AloI GAACNNNNNNTCC 5 cut(s) 497, 529, 765, 797, 1183
AluBI AGCT 8 cut(s) 211, 286, 442, 746, 1000, 1022, 1036, 1172
AluI AGCT 8 cut(s) 211, 286, 442, 746, 1000, 1022, 1036, 1172
Alw21I GWGCWC 3 cut(s) 213, 444, 932
Alw26I GTCTC 3 cut(s) 134, 188, 958
AlwI GGATC 3 cut(s) 687, 914, 971
AoxI GGCC 8 cut(s) 261, 279, 316, 324, 345, 406, 448, 630
ApeKI GCWGC 2 cut(s) 462, 743
ApoI RAATTY 1 cut(s) 836
Asp718I GGTACC 1 cut(s) 897
AspLEI GCGC 3 cut(s) 246, 658, 673
AspS9I GGNCC 4 cut(s) 417, 448, 483, 866
AsuHPI GGTGA 5 cut(s) 52, 70, 148, 613, 632
AvaII GGWCC 3 cut(s) 417, 483, 866
BaeGI GKGCMC 1 cut(s) 909
BanI GGYRCC 1 cut(s) 897
BanII GRGCYC 3 cut(s) 213, 444, 544
BbrPI CACGTG 1 cut(s) 944
Bbv12I GWGCWC 3 cut(s) 213, 444, 932
BbvI GCAGC 2 cut(s) 449, 755
BccI CCATC 6 cut(s) 91, 244, 312, 341, 763, 794
BceAI ACGGC 5 cut(s) 78, 163, 311, 331, 744
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 4 cut(s) 320, 455, 786, 924
BcoDI GTCTC 3 cut(s) 134, 188, 958
BfaI CTAG 1 cut(s) 1019
BfmI CTRYAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 659
BglI GCCNNNNNGGC 1 cut(s) 459
BisI GCNGC 9 cut(s) 111, 261, 348, 409, 412, 451, 463, 630, 744
BlsI GCNGC 9 cut(s) 112, 262, 349, 410, 413, 452, 464, 631, 745
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 320, 455, 786, 924
Bme18I GGWCC 3 cut(s) 417, 483, 866
BmeRI GACNNNNNGTC 1 cut(s) 178
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 4 cut(s) 417, 448, 483, 866
BmiI GGNNCC 7 cut(s) 40, 418, 419, 484, 549, 868, 899
BmrFI CCNGG 4 cut(s) 320, 455, 786, 924
BmsI GCATC 3 cut(s) 29, 231, 378
BoxI GACNNNNGTC 1 cut(s) 146
Bpu10I CCTNAGC 2 cut(s) 543, 843
BsaAI YACGTR 1 cut(s) 944
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 8 cut(s) 292, 403, 409, 454, 468, 588, 901, 923
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 232, 639
Bse3DI GCAATG 2 cut(s) 391, 1080
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 4 cut(s) 320, 455, 786, 924
BseDI CCNNGG 8 cut(s) 292, 403, 409, 454, 468, 588, 901, 923
BseGI GGATG 8 cut(s) 20, 104, 255, 288, 563, 598, 805, 814
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 3 cut(s) 165, 232, 639
BseMI GCAATG 2 cut(s) 391, 1080
BseMII CTCAG 3 cut(s) 557, 1017, 1149
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 909
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 449, 755
BseYI CCCAGC 2 cut(s) 509, 553
Bsh1236I CGCG 3 cut(s) 228, 260, 411
Bsh1285I CGRYCG 2 cut(s) 138, 264
BshFI GGCC 8 cut(s) 263, 281, 318, 326, 347, 408, 450, 632
BshNI GGYRCC 1 cut(s) 897
BsiEI CGRYCG 2 cut(s) 138, 264
BsiHKAI GWGCWC 3 cut(s) 213, 444, 932
BsiSI CCGG 2 cut(s) 36, 247
BslFI GGGAC 3 cut(s) 134, 166, 430
BslI CCNNNNNNNGG 3 cut(s) 165, 232, 639
BsmAI GTCTC 3 cut(s) 134, 188, 958
BsmFI GGGAC 3 cut(s) 134, 166, 430
BsnI GGCC 8 cut(s) 263, 281, 318, 326, 347, 408, 450, 632
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 5 cut(s) 213, 444, 544, 909, 932
Bsp143I GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
Bsp19I CCATGG 1 cut(s) 901
BspANI GGCC 8 cut(s) 263, 281, 318, 326, 347, 408, 450, 632
BspCNI CTCAG 3 cut(s) 556, 1018, 1150
BspFNI CGCG 3 cut(s) 228, 260, 411
BspHI TCATGA 2 cut(s) 213, 1012
BspLI GGNNCC 7 cut(s) 40, 418, 419, 484, 549, 868, 899
BspMAI CTGCAG 1 cut(s) 429
BspPI GGATC 3 cut(s) 687, 914, 971
BspT107I GGYRCC 1 cut(s) 897
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 391, 1080
BssECI CCNNGG 8 cut(s) 292, 403, 409, 454, 468, 588, 901, 923
BssMI GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
BssT1I CCWWGG 4 cut(s) 403, 468, 588, 901
Bst2UI CCWGG 4 cut(s) 320, 455, 786, 924
Bst4CI ACNGT 7 cut(s) 190, 386, 530, 601, 626, 938, 1195
Bst6I CTCTTC 2 cut(s) 31, 1130
BstBAI YACGTR 1 cut(s) 944
BstC8I GCNNGC 4 cut(s) 687, 828, 832, 852
BstDEI CTNAG 5 cut(s) 543, 747, 843, 1026, 1158
BstDSI CCRYGG 2 cut(s) 409, 901
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 8 cut(s) 20, 104, 255, 288, 563, 598, 805, 814
BstFNI CGCG 3 cut(s) 228, 260, 411
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 3 cut(s) 246, 658, 673
BstKTI GATC 7 cut(s) 102, 138, 258, 682, 922, 979, 1018
BstMAI GTCTC 3 cut(s) 134, 188, 958
BstMBI GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
BstMCI CGRYCG 2 cut(s) 138, 264
BstMWI GCNNNNNNNGC 2 cut(s) 208, 459
BstNI CCWGG 4 cut(s) 320, 455, 786, 924
BstNSI RCATGY 2 cut(s) 834, 854
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 4 cut(s) 318, 453, 784, 922
BstSFI CTRYAG 1 cut(s) 425
BstSLI GKGCMC 1 cut(s) 909
BstUI CGCG 3 cut(s) 228, 260, 411
BstV1I GCAGC 2 cut(s) 449, 755
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 679
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 8 cut(s) 263, 281, 318, 326, 347, 408, 450, 632
BtgI CCRYGG 2 cut(s) 409, 901
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 8 cut(s) 20, 104, 255, 288, 563, 598, 805, 814
Cac8I GCNNGC 4 cut(s) 687, 828, 832, 852
CciI TCATGA 2 cut(s) 213, 1012
CfoI GCGC 3 cut(s) 246, 658, 673
Cfr13I GGNCC 4 cut(s) 417, 448, 483, 866
Cfr42I CCGCGG 1 cut(s) 412
CseI GACGC 1 cut(s) 515
Csp6I GTAC 5 cut(s) 310, 583, 726, 898, 939
CviQI GTAC 5 cut(s) 310, 583, 726, 898, 939
DdeI CTNAG 5 cut(s) 543, 747, 843, 1026, 1158
DpnI GATC 7 cut(s) 101, 137, 257, 681, 921, 978, 1017
DpnII GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 4 cut(s) 261, 316, 406, 630
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 31, 1130
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 2 cut(s) 31, 1130
EciI GGCGGA 3 cut(s) 55, 80, 97
Ecl136II GAGCTC 2 cut(s) 211, 442
EclXI CGGCCG 1 cut(s) 261
Eco130I CCWWGG 4 cut(s) 403, 468, 588, 901
Eco24I GRGCYC 3 cut(s) 213, 444, 544
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 417, 483, 866
Eco52I CGGCCG 1 cut(s) 261
Eco53kI GAGCTC 2 cut(s) 211, 442
Eco72I CACGTG 1 cut(s) 944
EcoICRI GAGCTC 2 cut(s) 211, 442
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 4 cut(s) 318, 453, 784, 922
EcoT14I CCWWGG 4 cut(s) 403, 468, 588, 901
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 3 cut(s) 213, 444, 544
ErhI CCWWGG 4 cut(s) 403, 468, 588, 901
FaqI GGGAC 3 cut(s) 134, 166, 430
FauI CCCGC 3 cut(s) 20, 191, 407
Fnu4HI GCNGC 9 cut(s) 111, 261, 348, 409, 412, 451, 463, 630, 744
FokI GGATG 8 cut(s) 7, 91, 262, 275, 570, 605, 812, 821
FriOI GRGCYC 3 cut(s) 213, 444, 544
Fsp4HI GCNGC 9 cut(s) 111, 261, 348, 409, 412, 451, 463, 630, 744
FspBI CTAG 1 cut(s) 1019
GlaI GCGC 3 cut(s) 245, 657, 672
GluI GCNGC 9 cut(s) 111, 261, 348, 409, 412, 451, 463, 630, 744
GsaI CCCAGC 2 cut(s) 513, 557
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 8 cut(s) 263, 281, 318, 326, 347, 408, 450, 632
HapII CCGG 2 cut(s) 36, 247
HgaI GACGC 1 cut(s) 515
HhaI GCGC 3 cut(s) 246, 658, 673
Hin6I GCGC 3 cut(s) 244, 656, 671
HinP1I GCGC 3 cut(s) 244, 656, 671
HinfI GANTC 4 cut(s) 119, 266, 751, 1160
HpaII CCGG 2 cut(s) 36, 247
HphI GGTGA 5 cut(s) 52, 70, 148, 613, 632
Hpy166II GTNNAC 1 cut(s) 941
Hpy188I TCNGA 6 cut(s) 99, 293, 439, 919, 1120, 1190
Hpy188III TCNNGA 6 cut(s) 133, 139, 193, 214, 878, 1013
Hpy8I GTNNAC 1 cut(s) 941
Hpy99I CGWCG 4 cut(s) 176, 194, 317, 332
HpyAV CCTTC 8 cut(s) 85, 163, 409, 431, 496, 787, 1024, 1045
HpyCH4III ACNGT 7 cut(s) 190, 386, 530, 601, 626, 938, 1195
HpyCH4IV ACGT 4 cut(s) 174, 218, 605, 943
HpyCH4V TGCA 6 cut(s) 369, 396, 427, 490, 818, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 459
HpyF3I CTNAG 5 cut(s) 543, 747, 843, 1026, 1158
HpySE526I ACGT 4 cut(s) 174, 218, 605, 943
HspAI GCGC 3 cut(s) 244, 656, 671
KflI GGGWCCC 1 cut(s) 417
KpnI GGTACC 1 cut(s) 901
KspI CCGCGG 1 cut(s) 412
Kzo9I GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
LmnI GCTCC 7 cut(s) 44, 470, 847, 927, 970, 1033, 1169
Lsp1109I GCAGC 2 cut(s) 449, 755
LweI GCATC 3 cut(s) 29, 231, 378
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 4 cut(s) 174, 218, 605, 943
MaeIII GTNAC 4 cut(s) 386, 524, 601, 620
MalI GATC 7 cut(s) 101, 137, 257, 681, 921, 978, 1017
MboI GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
MboII GAAGA 5 cut(s) 18, 24, 214, 871, 1117
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 5 cut(s) 213, 444, 544, 909, 932
MluCI AATT 4 cut(s) 351, 836, 981, 1055
MlyI GAGTC 4 cut(s) 113, 260, 760, 1169
Mph1103I ATGCAT 1 cut(s) 492
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 3 cut(s) 113, 411, 553
MspI CCGG 2 cut(s) 36, 247
MspR9I CCNGG 4 cut(s) 320, 455, 786, 924
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 4 cut(s) 320, 455, 786, 924
MvnI CGCG 3 cut(s) 228, 260, 411
MwoI GCNNNNNNNGC 2 cut(s) 208, 459
NcoI CCATGG 1 cut(s) 901
NdeII GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
NlaIV GGNNCC 7 cut(s) 40, 418, 419, 484, 549, 868, 899
NmuCI GTSAC 4 cut(s) 386, 524, 601, 620
NsiI ATGCAT 1 cut(s) 492
NspI RCATGY 2 cut(s) 834, 854
PaeI GCATGC 2 cut(s) 834, 854
PagI TCATGA 2 cut(s) 213, 1012
PkrI GCNGC 9 cut(s) 112, 262, 349, 410, 413, 452, 464, 631, 745
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 4 cut(s) 113, 260, 759, 1168
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
PpsI GAGTC 4 cut(s) 113, 260, 759, 1168
Ppu21I YACGTR 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 417
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 213, 444
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 4 cut(s) 318, 453, 784, 922
PspCI CACGTG 1 cut(s) 944
PspFI CCCAGC 2 cut(s) 509, 553
PspGI CCWGG 4 cut(s) 318, 453, 784, 922
PspN4I GGNNCC 7 cut(s) 40, 418, 419, 484, 549, 868, 899
PspPI GGNCC 4 cut(s) 417, 448, 483, 866
PspPPI RGGWCCY 1 cut(s) 417
PstI CTGCAG 1 cut(s) 429
PsuI RGATCY 1 cut(s) 679
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 5 cut(s) 311, 584, 727, 899, 940
RsaNI GTAC 5 cut(s) 310, 583, 726, 898, 939
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 2 cut(s) 213, 444
SacII CCGCGG 1 cut(s) 412
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 9 cut(s) 111, 261, 348, 409, 412, 451, 463, 630, 744
Sau3AI GATC 7 cut(s) 99, 135, 255, 679, 919, 976, 1015
Sau96I GGNCC 4 cut(s) 417, 448, 483, 866
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 4 cut(s) 113, 260, 760, 1169
ScrFI CCNGG 4 cut(s) 320, 455, 786, 924
SduI GDGCHC 5 cut(s) 213, 444, 544, 909, 932
SfaNI GCATC 3 cut(s) 29, 231, 378
SfcI CTRYAG 1 cut(s) 425
Sfr303I CCGCGG 1 cut(s) 412
SgrBI CCGCGG 1 cut(s) 412
SinI GGWCC 3 cut(s) 417, 483, 866
SmiMI CAYNNNNRTG 1 cut(s) 338
SphI GCATGC 2 cut(s) 834, 854
Sse9I AATT 4 cut(s) 351, 836, 981, 1055
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 1019
SstI GAGCTC 2 cut(s) 213, 444
StyD4I CCNGG 4 cut(s) 318, 453, 784, 922
StyI CCWWGG 4 cut(s) 403, 468, 588, 901
TaaI ACNGT 7 cut(s) 190, 386, 530, 601, 626, 938, 1195
TaiI ACGT 4 cut(s) 177, 221, 608, 946
TaqI TCGA 3 cut(s) 138, 192, 651
TasI AATT 4 cut(s) 351, 836, 981, 1055
TatI WGTACW 1 cut(s) 582
TauI GCSGC 7 cut(s) 113, 263, 350, 411, 414, 453, 632
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TseFI GTSAC 4 cut(s) 386, 524, 601, 620
TseI GCWGC 2 cut(s) 462, 743
Tsp45I GTSAC 4 cut(s) 386, 524, 601, 620
TspDTI ATGAA 3 cut(s) 18, 609, 1089
VpaK11BI GGWCC 3 cut(s) 417, 483, 866
XagI CCTNNNNNAGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 836
XceI RCATGY 2 cut(s) 834, 854
XspI CTAG 1 cut(s) 1019
ZrmI AGTACT 1 cut(s) 584
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.