Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012399

Physical Location & Seq

Genomic Coordinates Reverse (-)

8996714 .. 8999917

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCTGGGCGATCATGGCTGATCGATAGCAACCGGATTGCAACGAAGATTATGAGTGCATCGGCTAGTTCCGATCCTCGCCAAGTGGTGTGGAAGAGCAACCCGTCAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATGTTGTTGATGATTGGCCAGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCTGAGATCATATGGCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGCTCACACCCTTTCATTGATGAGTTCATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTACCAGGTGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCACAGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAAGACAGGAAGAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAGATAATGGTTCTCTATGGCGGAAAAGCTGTGAAAACCAACTGGGTGATGCACCAATACCATTTGGGAATAGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATTTTCTACCAGCAGCCACAACAGCTAGTAGTCAAGCGAGGTGATAAAGCTGAACAGGAAGTCTCTGAGGATATCTTTGCTGCAGTGACTCCAACAGCGGATCCTGTCACTCCAAAATTAGCTACACCTGAGCCTCGAAATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCCAGTGACTATGTATCTGCCCATGAGGTTTCTCTTGCCGAGACATCCGAGGTAATGTGTATGGAAGATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACCAAGTTCTGGGCCTGAGCTGGAGCACGGACTTGAAAACGGAGCAAAAGAAATGTTAGATGATAAAGAGGAGCAAGAGAAGGATAGAGACAATGAAAACCAAGGTGAGGAAGATCCGACGTGGTTTGACAGTGGATCTCAGTTTATCTTGAATTCGCAACAGCTTGTGGAAGCCTTGTCTCTTTGCGACGATCTCTTGGGATCACAGGACAGGGAGGAAAACACAAACAGTGGAAGCTTAAAGGATAAACAACCATGTATTGCGGATTACGCACACCTAGGACCAGAAGACTTCAAACGTGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCTAACATAGAGCTTGATACTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCTTGGGGGACTGGAAAGACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

449

Amino Acids

50.29

Weight (kDa)

4.92

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	59 - 192	2.5e-24	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25580
fragaria_vesca	FvH4_4g28090 FvH4_4g28090
malus_domestica	MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica	Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis	pycom13g04080 pycom16g04220
rosa_chinensis	RchiOBHm_Chr4g0435841
rosa_laevigata	RLG00000006555
rosa_multiflora	Rmu_sc0002642.1_g000003
rosa_roxburghii	Rroxscaffold_5G00377020
rosa_rugosa	Rorug04G0289900
rosa_samantha	Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana	Rw4G030070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	920
AciI	CCGC	3 cut(s)	531, 719, 1175
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	5 cut(s)	188, 328, 771, 1063, 1298
AfiI	CCNNNNNNNGG	2 cut(s)	920, 1018
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	497, 896, 947, 1063, 1207
AjiI	CACGTC	1 cut(s)	1032
AjnI	CCWGG	2 cut(s)	166, 334
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	5 cut(s)	366, 688, 845, 993, 1095
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	164, 923
ApeKI	GCWGC	2 cut(s)	634, 701
ApoI	RAATTY	5 cut(s)	188, 328, 771, 1063, 1298
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AsiGI	ACCGGT	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	1189
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	2 cut(s)	923, 1193
AsuHPI	GGTGA	4 cut(s)	568, 614, 674, 1028
AsuNHI	GCTAGC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	1193
AvrII	CCTAGG	1 cut(s)	1189
BalI	TGGCCA	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	721
BbsI	GAAGAC	2 cut(s)	594, 1206
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	2 cut(s)	646, 688
BccI	CCATC	4 cut(s)	205, 296, 344, 482
BciT130I	CCWGG	2 cut(s)	168, 336
BcoDI	GTCTC	5 cut(s)	366, 688, 845, 993, 1095
BfaI	CTAG	4 cut(s)	66, 227, 647, 1190
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	2 cut(s)	635, 702
BlnI	CCTAGG	1 cut(s)	1189
BlsI	GCNGC	2 cut(s)	636, 703
Bme1390I	CCNGG	2 cut(s)	168, 336
Bme18I	GGWCC	1 cut(s)	1193
BmeT110I	CYCGRG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	1032
BmgT120I	GGNCC	2 cut(s)	923, 1193
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	2 cut(s)	168, 336
BmrI	ACTGGG	2 cut(s)	562, 807
BmsI	GCATC	2 cut(s)	68, 549
BmtI	GCTAGC	1 cut(s)	230
BmuI	ACTGGG	2 cut(s)	562, 807
BpiI	GAAGAC	2 cut(s)	594, 1206
BpmI	CTGGAG	2 cut(s)	953, 1238
Bpu10I	CCTNAGC	2 cut(s)	750, 927
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	858, 1012, 1189
BsaWI	WCCGGW	2 cut(s)	33, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	920, 1018
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	4 cut(s)	557, 795, 813, 1339
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	168, 336
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	858, 1012, 1189
BseGI	GGATG	4 cut(s)	279, 319, 493, 854
BseLI	CCNNNNNNNGG	2 cut(s)	920, 1018
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	7 cut(s)	198, 678, 741, 918, 1064, 1266, 1277
BseNI	ACTGG	4 cut(s)	557, 795, 813, 1339
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	646, 688
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	166, 925
BshTI	ACCGGT	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	34, 476
BslFI	GGGAC	3 cut(s)	102, 367, 1345
BslI	CCNNNNNNNGG	2 cut(s)	920, 1018
BsmAI	GTCTC	5 cut(s)	366, 688, 845, 993, 1095
BsmFI	GGGAC	3 cut(s)	102, 367, 1345
BsnI	GGCC	2 cut(s)	166, 925
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	939
BspACI	CCGC	3 cut(s)	531, 719, 1175
BspANI	GGCC	2 cut(s)	166, 925
BspCNI	CTCAG	7 cut(s)	199, 679, 742, 919, 1063, 1267, 1278
BspDI	ATCGAT	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	1 cut(s)	723
BspMAI	CTGCAG	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	230
BspQI	GCTCTTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	4 cut(s)	557, 795, 813, 1339
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	858, 1012, 1189
BssT1I	CCWWGG	2 cut(s)	1012, 1189
Bst2UI	CCWGG	2 cut(s)	168, 336
Bst4CI	ACNGT	5 cut(s)	146, 289, 358, 1043, 1142
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	228, 452, 1292
BstDEI	CTNAG	9 cut(s)	207, 324, 618, 687, 750, 927, 1050, 1275, 1286
BstF5I	GGATG	4 cut(s)	279, 319, 493, 854
BstHHI	GCGC	1 cut(s)	450
BstMAI	GTCTC	5 cut(s)	366, 688, 845, 993, 1095
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 172, 386, 447, 643, 1181
BstNI	CCWGG	2 cut(s)	168, 336
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	166, 334
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	646, 688
BstV2I	GAAGAC	2 cut(s)	594, 1206
BstX2I	RGATCY	3 cut(s)	721, 1024, 1046
BstYI	RGATCY	3 cut(s)	721, 1024, 1046
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	166, 925
BsuTUI	ATCGAT	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	1032
BtsCI	GGATG	4 cut(s)	279, 319, 493, 854
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	6 cut(s)	151, 711, 802, 820, 1048, 1147
Cac8I	GCNNGC	3 cut(s)	228, 452, 1292
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	923, 1193
ClaI	ATCGAT	1 cut(s)	24
CsiI	ACCWGGT	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	475
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviAII	CATG	5 cut(s)	15, 131, 833, 905, 1167
DdeI	CTNAG	9 cut(s)	207, 324, 618, 687, 750, 927, 1050, 1275, 1286
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	1012, 1189
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	1193
Eco88I	CYCGRG	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	2 cut(s)	166, 334
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	1012, 1189
ErhI	CCWWGG	2 cut(s)	1012, 1189
FaeI	CATG	5 cut(s)	18, 134, 836, 908, 1170
FaqI	GGGAC	3 cut(s)	102, 367, 1345
FatI	CATG	5 cut(s)	14, 130, 832, 904, 1166
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	635, 702
FokI	GGATG	4 cut(s)	266, 306, 500, 841
Fsp4HI	GCNGC	2 cut(s)	635, 702
FspBI	CTAG	4 cut(s)	66, 227, 647, 1190
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	2 cut(s)	635, 702
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	953, 1238
HaeIII	GGCC	2 cut(s)	166, 925
HapII	CCGG	2 cut(s)	34, 476
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	18, 134, 836, 908, 1170
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	2 cut(s)	387, 1147
HinfI	GANTC	4 cut(s)	306, 421, 709, 782
HpaII	CCGG	2 cut(s)	34, 476
HphI	GGTGA	4 cut(s)	568, 614, 674, 1028
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	9 cut(s)	73, 202, 688, 781, 859, 888, 1029, 1230, 1287
Hpy188III	TCNNGA	8 cut(s)	108, 206, 296, 425, 905, 1060, 1217, 1241
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	3 cut(s)	431, 1033, 1103
HpyAV	CCTTC	3 cut(s)	589, 593, 985
HpyCH4III	ACNGT	5 cut(s)	146, 289, 358, 1043, 1142
HpyCH4IV	ACGT	2 cut(s)	1031, 1210
HpyCH4V	TGCA	5 cut(s)	41, 59, 507, 562, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 172, 386, 447, 643, 1181
HpyF3I	CTNAG	9 cut(s)	207, 324, 618, 687, 750, 927, 1050, 1275, 1286
HpySE526I	ACGT	2 cut(s)	1031, 1210
Hsp92II	CATG	5 cut(s)	18, 134, 836, 908, 1170
HspAI	GCGC	1 cut(s)	448
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	934, 953, 982
Lsp1109I	GCAGC	2 cut(s)	646, 688
LweI	GCATC	2 cut(s)	68, 549
MabI	ACCWGGT	1 cut(s)	334
MaeI	CTAG	4 cut(s)	66, 227, 647, 1190
MaeII	ACGT	2 cut(s)	1031, 1210
MaeIII	GTNAC	6 cut(s)	311, 706, 727, 797, 805, 815
MflI	RGATCY	3 cut(s)	721, 1024, 1046
MhlI	GDGCHC	1 cut(s)	939
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	6 cut(s)	188, 328, 737, 771, 1063, 1298
MluNI	TGGCCA	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	3 cut(s)	465, 737, 1052
Mox20I	TGGCCA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	166
MseI	TTAA	3 cut(s)	251, 342, 1151
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	166
MspA1I	CMGCKG	2 cut(s)	719, 1294
MspI	CCGG	2 cut(s)	34, 476
MspR9I	CCNGG	2 cut(s)	168, 336
MvaI	CCWGG	2 cut(s)	168, 336
MwoI	GCNNNNNNNGC	6 cut(s)	16, 172, 386, 447, 643, 1181
NdeI	CATATG	1 cut(s)	215
NheI	GCTAGC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	18, 134, 836, 908, 1170
NlaIV	GGNNCC	1 cut(s)	723
NmeAIII	GCCGAG	1 cut(s)	874
NmuCI	GTSAC	4 cut(s)	706, 727, 797, 815
NspI	RCATGY	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	904
PciI	ACATGT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	306, 421, 782
PflFI	GACNNNGTC	2 cut(s)	114, 358
PflMI	CCANNNNNTGG	1 cut(s)	920
PinAI	ACCGGT	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	636, 703
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	166, 334
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	166, 334
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	2 cut(s)	923, 1193
PspXI	VCTCGAGB	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	3 cut(s)	721, 1024, 1046
PsyI	GACNNNGTC	2 cut(s)	114, 358
PvuII	CAGCTG	1 cut(s)	1294
RseI	CAYNNNNRTG	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	251, 342, 1151
SatI	GCNGC	2 cut(s)	635, 702
Sau96I	GGNCC	2 cut(s)	923, 1193
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	168, 336
SduI	GDGCHC	1 cut(s)	939
SexAI	ACCWGGT	1 cut(s)	334
SfaNI	GCATC	2 cut(s)	68, 549
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	1193
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	6 cut(s)	188, 328, 737, 771, 1063, 1298
SsiI	CCGC	3 cut(s)	531, 719, 1175
SspMI	CTAG	4 cut(s)	66, 227, 647, 1190
StyD4I	CCNGG	2 cut(s)	166, 334
StyI	CCWWGG	2 cut(s)	1012, 1189
TaaI	ACNGT	5 cut(s)	146, 289, 358, 1043, 1142
TaiI	ACGT	2 cut(s)	1034, 1213
TaqI	TCGA	4 cut(s)	24, 178, 406, 757
TasI	AATT	6 cut(s)	188, 328, 737, 771, 1063, 1298
TfiI	GAWTC	3 cut(s)	306, 421, 782
Tru1I	TTAA	3 cut(s)	251, 342, 1151
Tru9I	TTAA	3 cut(s)	251, 342, 1151
TscAI	CASTG	6 cut(s)	151, 711, 802, 820, 1048, 1147
TseFI	GTSAC	4 cut(s)	706, 727, 797, 815
TseI	GCWGC	2 cut(s)	634, 701
Tsp45I	GTSAC	4 cut(s)	706, 727, 797, 815
TspDTI	ATGAA	4 cut(s)	256, 268, 921, 1020
TspGWI	ACGGA	2 cut(s)	954, 966
TspRI	CASTG	6 cut(s)	151, 711, 802, 820, 1048, 1147
Tth111I	GACNNNGTC	2 cut(s)	114, 358
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	1193
XapI	RAATTY	5 cut(s)	188, 328, 771, 1063, 1298
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1298
XhoI	CTCGAG	1 cut(s)	177
XmaJI	CCTAGG	1 cut(s)	1189
XspI	CTAG	4 cut(s)	66, 227, 647, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.