FvH4_4g28090
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012399
Physical Location & Seq
Reverse (-)
28835784 .. 28839636
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28090.t2

Sequence Viewer

Length: 1422 bp
ATGGCTGGACCATCTTGGTTGGTGGACAAAAAGAGAATCGCAACAAAAATCAGGAGTGCATCTGCAAGTGATCCTGGAAGAATCAAATGGCAAAGCAACCCAACTAGAGCTTGCCCAAACTGCCAATATACAATCGACAACAGTGATGTTTCTCAAGAGTGGCCAGGATTACCCAAGGGTGTGAAATTTGATCCAACAGATCAAGAGATTATATGGCACTTGCTTGCAAAAACTGGTGCAGGGGATTTGAGACCCCATCCTTTTATTGATGCATTTATCACAGATTTTGATGGTGATGACGGAGTCTTATGTTCTCATCCAAAGAAGCTGCCTGGTATCAAGCAAGATGGAAGTGTATCCCACTTCTTTCATGTAGCAATTAAGGCTTACAACACCGGTACTCGAAAGCGTCGAAAAATACATGATGATGATTATGGTGATATCCGCTGGCACAAGACTGGAAGGACTAAACCAGTGATCCTGGACGGGGTTCAAAGAGGGTGCAAGAAGATTATGGTTCTGTATACAAGCACGGCCAAAGGAGGGAAAGCTGAGAAAACCAATTGGGTCATGCACCAGTATCACCTTGGAACTGATGAGGATGAGAAGGAAGGGGAGTATGTTATTTCTAAAATATATTACCAGCAACAGCAAGTCAAGCAAGCTGATAAAACTGATCAAAATTCTCCTGAAAGTAGTGATCCTGTGATTCAAGCCGACCCGGTTACTCCTAAGTCAGTGATTCCGGATCCTGTGATTCAAGCCAACCCGGTTACTCCTAAGTCGGTGATTCCTGAAGCTTTGAACCCTGATTTTAATTTGGTAGAAGATATTCCTATTACTTGCGCAGAACCCAACTCAGTAACTCCTGAACCTCCGCGCCCTGAAAGGAGACAATCTACTCTTGGTTTTGGGGAAGGTACTCATATTGCTTCCACAGATCCCTTTCTTCAGATGCAAATGAATCATCATGATATGGACTGTTTTGAAGATGAAGTTCATCATGGATATGAACAGTCTGGCTCTCATGATCAACACAGCGTAGAGATTCCAAATGATGAAGCAATAAACAATGATGTAAACCATACTCAGGAAGATCCAAAGTGGTGGGACAGTGAGTCACAGAATCTGCTAGATTCACAACAACTCGTGGAAGGCTTGTCTTTGTGTGATGATCTCCTTCAGAGCCAATCTCCAATTAGGGGTGAACATGGAAATGAGCCAGCACAGATCAAACCATGTCTTGCTGATTATGCTAAGCTAGGAGCAGAAAATCTAAAGAAGGATCTAGAGGAGTGCCAAAATATTACCCTCGATCCTGCTAACATGGAACTTGGAACACCTCCAGATTTCCGACTTAGCCAGCTTGAATTCGGATCACAGGACAGTTTCCTTTCTTGGGGTGGCAAATTGGCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

474

Amino Acids

52.87

Weight (kDa)

5.07

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 58 - 196 8.9e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 847
AccI GTMKAC 1 cut(s) 524
AccII CGCG 1 cut(s) 880
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 2 cut(s) 445, 878
AcoI YGGCCR 2 cut(s) 161, 534
AcsI RAATTY 3 cut(s) 185, 682, 1370
AcuI CTGAAG 3 cut(s) 816, 935, 1166
AfaI GTAC 2 cut(s) 400, 922
AfiI CCNNNNNNNGG 5 cut(s) 487, 543, 1090, 1202, 1399
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 6 cut(s) 494, 713, 761, 805, 989, 1370
AhdI GACNNNNNGTC 1 cut(s) 1117
AjnI CCWGG 4 cut(s) 73, 163, 331, 480
AluBI AGCT 7 cut(s) 110, 328, 551, 665, 800, 1261, 1366
AluI AGCT 7 cut(s) 110, 328, 551, 665, 800, 1261, 1366
Alw26I GTCTC 2 cut(s) 244, 886
AlwNI CAGNNNCTG 1 cut(s) 1129
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 2 cut(s) 161, 534
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 3 cut(s) 185, 682, 1370
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 831
AspLEI GCGC 2 cut(s) 848, 882
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 2 cut(s) 722, 770
AsuHPI GGTGA 5 cut(s) 305, 449, 575, 799, 1217
AvaII GGWCC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 163
BamHI GGATCC 1 cut(s) 748
BauI CACGAG 1 cut(s) 1148
BbvI GCAGC 1 cut(s) 315
BccI CCATC 4 cut(s) 19, 264, 284, 341
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 4 cut(s) 75, 165, 333, 482
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 2 cut(s) 676, 1030
BcnI CCSGG 2 cut(s) 722, 770
BcoDI GTCTC 2 cut(s) 244, 886
BfaI CTAG 4 cut(s) 105, 1133, 1262, 1289
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 1257
BlsI GCNGC 1 cut(s) 330
Bme1390I CCNGG 6 cut(s) 75, 165, 333, 482, 722, 770
Bme18I GGWCC 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 1117
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 6 cut(s) 75, 165, 333, 482, 722, 770
BmsI GCATC 3 cut(s) 68, 259, 945
BplI GAGNNNNNCTC 2 cut(s) 1177, 1209
BpmI CTGGAG 1 cut(s) 1329
Bpu1102I GCTNAGC 1 cut(s) 1257
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 2 cut(s) 722, 770
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 174, 586
BsaWI WCCGGW 2 cut(s) 395, 745
Bsc4I CCNNNNNNNGG 5 cut(s) 487, 543, 1090, 1202, 1399
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 4 cut(s) 238, 463, 473, 577
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 4 cut(s) 75, 165, 333, 482
BseDI CCNNGG 2 cut(s) 174, 586
BseGI GGATG 3 cut(s) 256, 316, 607
BseLI CCNNNNNNNGG 5 cut(s) 487, 543, 1090, 1202, 1399
BseMII CTCAG 4 cut(s) 543, 873, 1103, 1407
BseNI ACTGG 4 cut(s) 238, 463, 473, 577
BseRI GAGGAG 1 cut(s) 1307
BseXI GCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 880
BshFI GGCC 2 cut(s) 163, 536
BshTI ACCGGT 1 cut(s) 395
BsiSI CCGG 4 cut(s) 396, 722, 746, 770
BslFI GGGAC 1 cut(s) 1124
BslI CCNNNNNNNGG 5 cut(s) 487, 543, 1090, 1202, 1399
BsmAI GTCTC 2 cut(s) 244, 886
BsmFI GGGAC 1 cut(s) 1124
BsnI GGCC 2 cut(s) 163, 536
Bso31I GGTCTC 1 cut(s) 244
Bsp13I TCCGGA 1 cut(s) 745
Bsp1720I GCTNAGC 1 cut(s) 1257
BspACI CCGC 2 cut(s) 445, 878
BspANI GGCC 2 cut(s) 163, 536
BspCNI CTCAG 4 cut(s) 544, 872, 1102, 1408
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 1 cut(s) 880
BspHI TCATGA 2 cut(s) 970, 1027
BspLI GGNNCC 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 4 cut(s) 238, 463, 473, 577
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 174, 586
BssNAI GTATAC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 2 cut(s) 174, 586
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 4 cut(s) 75, 165, 333, 482
Bst4CI ACNGT 5 cut(s) 143, 983, 1017, 1115, 1388
BstC8I GCNNGC 6 cut(s) 112, 225, 449, 663, 1224, 1364
BstDEI CTNAG 8 cut(s) 552, 732, 780, 859, 1089, 1257, 1358, 1416
BstF5I GGATG 3 cut(s) 256, 316, 607
BstFNI CGCG 1 cut(s) 880
BstHHI GCGC 2 cut(s) 848, 882
BstMAI GTCTC 2 cut(s) 244, 886
BstMWI GCNNNNNNNGC 4 cut(s) 120, 383, 658, 1253
BstNI CCWGG 4 cut(s) 75, 165, 333, 482
BstSCI CCNGG 6 cut(s) 73, 163, 331, 480, 720, 768
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 1 cut(s) 315
BstX2I RGATCY 4 cut(s) 748, 940, 1096, 1285
BstXI CCANNNNNNTGG 1 cut(s) 1107
BstYI RGATCY 4 cut(s) 748, 940, 1096, 1285
BstZ17I GTATAC 1 cut(s) 525
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 163, 536
BtsCI GGATG 3 cut(s) 256, 316, 607
BtsIMutI CAGTG 4 cut(s) 148, 480, 744, 1120
Cac8I GCNNGC 6 cut(s) 112, 225, 449, 663, 1224, 1364
CaiI CAGNNNCTG 1 cut(s) 1129
CciI TCATGA 2 cut(s) 970, 1027
CfoI GCGC 2 cut(s) 848, 882
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 399, 921
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 9 cut(s) 371, 422, 571, 971, 1004, 1028, 1211, 1239, 1327
CviQI GTAC 2 cut(s) 399, 921
DdeI CTNAG 8 cut(s) 552, 732, 780, 859, 1089, 1257, 1358, 1416
DriI GACNNNNNGTC 1 cut(s) 1117
EaeI YGGCCR 2 cut(s) 161, 534
Eam1105I GACNNNNNGTC 1 cut(s) 1117
Eco130I CCWWGG 2 cut(s) 174, 586
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 3 cut(s) 816, 935, 1166
EcoRI GAATTC 1 cut(s) 1370
EcoRII CCWGG 4 cut(s) 73, 163, 331, 480
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 174, 586
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 2 cut(s) 174, 586
FaeI CATG 9 cut(s) 374, 425, 574, 974, 1007, 1031, 1214, 1242, 1330
FaqI GGGAC 1 cut(s) 1124
FatI CATG 9 cut(s) 370, 421, 570, 970, 1003, 1027, 1210, 1238, 1326
FbaI TGATCA 2 cut(s) 676, 1030
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 3 cut(s) 243, 303, 614
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 4 cut(s) 105, 1133, 1262, 1289
FspI TGCGCA 1 cut(s) 847
GlaI GCGC 2 cut(s) 847, 881
GluI GCNGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 1329
HaeIII GGCC 2 cut(s) 163, 536
HapII CCGG 4 cut(s) 396, 722, 746, 770
HgaI GACGC 1 cut(s) 398
HhaI GCGC 2 cut(s) 848, 882
Hin1II CATG 9 cut(s) 374, 425, 574, 974, 1007, 1031, 1214, 1242, 1330
Hin6I GCGC 2 cut(s) 846, 880
HinP1I GCGC 2 cut(s) 846, 880
HindIII AAGCTT 1 cut(s) 798
HpaII CCGG 4 cut(s) 396, 722, 746, 770
HphI GGTGA 5 cut(s) 305, 449, 575, 799, 1217
Hpy166II GTNNAC 4 cut(s) 25, 525, 1081, 1208
Hpy188I TCNGA 4 cut(s) 954, 1185, 1355, 1376
Hpy8I GTNNAC 4 cut(s) 25, 525, 1081, 1208
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 7 cut(s) 456, 601, 605, 911, 1148, 1190, 1276
HpyCH4III ACNGT 5 cut(s) 143, 983, 1017, 1115, 1388
HpyCH4V TGCA 8 cut(s) 59, 65, 227, 239, 272, 504, 574, 958
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 383, 658, 1253
HpyF3I CTNAG 8 cut(s) 552, 732, 780, 859, 1089, 1257, 1358, 1416
Hsp92II CATG 9 cut(s) 374, 425, 574, 974, 1007, 1031, 1214, 1242, 1330
HspAI GCGC 2 cut(s) 846, 880
Kpn2I TCCGGA 1 cut(s) 745
Ksp22I TGATCA 2 cut(s) 676, 1030
LmnI GCTCC 1 cut(s) 1265
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 3 cut(s) 68, 259, 945
MaeI CTAG 4 cut(s) 105, 1133, 1262, 1289
MaeIII GTNAC 4 cut(s) 724, 772, 862, 1119
MboII GAAGA 6 cut(s) 90, 520, 839, 941, 1001, 1106
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 4 cut(s) 748, 940, 1096, 1285
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 8 cut(s) 185, 378, 562, 682, 817, 1197, 1370, 1409
MluNI TGGCCA 1 cut(s) 163
MlyI GAGTC 2 cut(s) 312, 1127
MmeI TCCRAC 2 cut(s) 218, 1378
MnlI CCTC 7 cut(s) 491, 536, 592, 885, 1285, 1322, 1353
Mox20I TGGCCA 1 cut(s) 163
Mph1103I ATGCAT 1 cut(s) 274
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 831
MscI TGGCCA 1 cut(s) 163
MseI TTAA 2 cut(s) 381, 816
MslI CAYNNNNRTG 3 cut(s) 426, 1008, 1215
Msp20I TGGCCA 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 4 cut(s) 396, 722, 746, 770
MspR9I CCNGG 6 cut(s) 75, 165, 333, 482, 722, 770
MunI CAATTG 1 cut(s) 562
MvaI CCWGG 4 cut(s) 75, 165, 333, 482
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 4 cut(s) 120, 383, 658, 1253
NciI CCSGG 2 cut(s) 722, 770
NlaIII CATG 9 cut(s) 374, 425, 574, 974, 1007, 1031, 1214, 1242, 1330
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 1 cut(s) 1119
NsbI TGCGCA 1 cut(s) 847
NsiI ATGCAT 1 cut(s) 274
PagI TCATGA 2 cut(s) 970, 1027
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 831
PflFI GACNNNGTC 1 cut(s) 302
PfoI TCCNGGA 2 cut(s) 73, 480
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 2 cut(s) 311, 1126
PpsI GAGTC 2 cut(s) 311, 1126
Psp6I CCWGG 4 cut(s) 73, 163, 331, 480
PspGI CCWGG 4 cut(s) 73, 163, 331, 480
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 1129
PsuI RGATCY 4 cut(s) 748, 940, 1096, 1285
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 2 cut(s) 400, 922
RsaNI GTAC 2 cut(s) 399, 921
RseI CAYNNNNRTG 3 cut(s) 426, 1008, 1215
SaqAI TTAA 2 cut(s) 381, 816
SatI GCNGC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 312, 1127
ScrFI CCNGG 6 cut(s) 75, 165, 333, 482, 722, 770
SfaNI GCATC 3 cut(s) 68, 259, 945
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 426, 1008, 1215
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 8 cut(s) 185, 378, 562, 682, 817, 1197, 1370, 1409
SsiI CCGC 2 cut(s) 445, 878
SspI AATATT 1 cut(s) 1306
SspMI CTAG 4 cut(s) 105, 1133, 1262, 1289
StyD4I CCNGG 6 cut(s) 73, 163, 331, 480, 720, 768
StyI CCWWGG 2 cut(s) 174, 586
TaaI ACNGT 5 cut(s) 143, 983, 1017, 1115, 1388
TaqI TCGA 4 cut(s) 135, 403, 412, 1314
TasI AATT 8 cut(s) 185, 378, 562, 682, 817, 1197, 1370, 1409
Tru1I TTAA 2 cut(s) 381, 816
Tru9I TTAA 2 cut(s) 381, 816
TscAI CASTG 4 cut(s) 148, 480, 744, 1120
TseFI GTSAC 1 cut(s) 1119
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 1119
TspDTI ATGAA 6 cut(s) 359, 977, 989, 1008, 1026, 1074
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 4 cut(s) 148, 480, 744, 1120
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 3 cut(s) 185, 682, 1370
XbaI TCTAGA 1 cut(s) 1288
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 4 cut(s) 105, 1133, 1262, 1289
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.