Rorug04G0289900
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
46437849 .. 46438184
336 bp
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UTR
Exon/CDS
Intron
Rorug04G0289900.1

Sequence Viewer

Length: 222 bp
ATGGGCTTTACTGCTTCATTTATGGTGCTTGAAGTGGTTGAGCAGAGTTCAAGGTGTCACATGGGCATAGGAATTGATGCTTGGAGAGAGGTAGATGAAGGAGAGGGTGTTGTCGTTGTCATCAATCTTGATAGCAAGGCAGTAAGGTCTTTGAGCTTGAAAATGCCAAATTGGATTTATGAGGGGAATATTTCCTTCAGGCATTCGGTTTCTTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.13

Weight (kDa)

5.14

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012399)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 32, 51, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
BmsI GCATC 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
BsmI GAATGC 1 cut(s) 202
CviAII CATG 2 cut(s) 61, 219
CviJI RGCY 2 cut(s) 6, 156
CviKI_1 RGCY 2 cut(s) 6, 156
Eco57I CTGAAG 1 cut(s) 181
FaeI CATG 2 cut(s) 64, 222
FaiI YATR 5 cut(s) 23, 62, 68, 180, 220
FatI CATG 2 cut(s) 60, 218
Hin1II CATG 2 cut(s) 64, 222
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 92, 205
HpyCH4V TGCA 1 cut(s) 218
Hsp92II CATG 2 cut(s) 64, 222
LpnPI CCDG 1 cut(s) 184
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 56
MluCI AATT 2 cut(s) 72, 169
MnlI CCTC 3 cut(s) 82, 97, 175
Mva1269I GAATGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 64, 222
NmuCI GTSAC 1 cut(s) 56
PctI GAATGC 1 cut(s) 202
SetI ASST 4 cut(s) 56, 93, 149, 158
SfaNI GCATC 1 cut(s) 67
SgeI CNNG 8 cut(s) 41, 63, 73, 93, 140, 148, 169, 211
Sse9I AATT 2 cut(s) 72, 169
SspI AATATT 1 cut(s) 190
TasI AATT 2 cut(s) 72, 169
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 6, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.