pycom13g04080
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012399
Physical Location & Seq
Reverse (-)
2726011 .. 2729081
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g04080.3

Sequence Viewer

Length: 1416 bp
ATGGCTGGGCCATCATGGTTGTTTGACAAAAATAGAATCGCAACAAAAATCAGGAGTGCATCTGGAAGCTATGATTCTGTTGGAATTAAATGGCAAAGCAACCCAACTAAATCTTGTCCAAAATGCCATTATACGATTGACAATAGTGATGTTGCTCAAGAGTGGCCGGGTTTACTCAAGGGTGTAAAATTTGATCCAACTGATCAAGAGATTATATGGCACTTACTTGCAAAATCTGGTGTAGGTGATCAAAAACCCCATCCTTTTATTGATGAGTTTATTCTAACTGTTGATGACGACGAAGGAATCTGTTGTTCCCATCCTAGGAAACTACCTAATGTTAAGCTAGATGGAAGTCCATCCCACTTCTTTCATAGAGCAATTAAGGCTTACAATACTGGAACACGAAAGCGGCGAAAGATACATGATGGTGATGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAGCCAGTGATATTGGATGGAGTACAAAAAGGGTGCAAGAAGATTATGGTTCTTTACATGAGCACGGTCAGAGGAGGAAAACCTGTGAAAACCAATTGGGTTATGCATCAATATCACCTAGGCATTGAGGAGGATGAGAAGGATGGAGAGTATGTTATATCAAAAATATATTACCAGCAGCAGGAAGCCAAGCAAGCTGATAAAACTGATCAAGATGTTCCTGAAAGTATTGGTGCGGTGATCACAAAGGTAGATCCAGTCACTCCCAAGTTGGTTACTCCTGAACCTCCGCGCGCTGAACAAAAGCTTGGTGATTTTGATTTGGGACTGGATACTCCTGCTCCTTCCAGAGATCCCTTTCTTCAGTATCGTGCGGAAGACGGTGCTGAAGATGAAGTGCATCCTGATGTTGACTCTGCTTTGGATGAAGCTCATCCCGAGGTGAACCGTGCTGAAGATGTTCGCCCTGAATCTGAAATTCCTGACGATTATGATCAACACAAGGTAGAAAACCAAGCCGATGAAGTAATTAATAACACTGAAAACATTGATCATGCTCAGGAAGATCCAAAATGGTGGGACAATGAGTCACAGAACCTTCTGGATTCGCAACAACTTGTGGAAGGGTTGTCTCTGTGTGATGAGCTCCTTCAGAGCCAATCTCCAAATAGGGGTGCGCATGAAAATGGTGAACAAGCACATGTCAAACCCCGTCTTGCTGATTACGCTAAACTAGGACCTGAGGATTTAAAGAAGGATCTAGAGGCGTGCCAAAATATTGTCCTTGATCCTGCTAATATTATGGACCTTGATACACCTCCGGATTTCCGACTCAGCCAGCTGGTAAGCCGTCTTCTCTGCGACTTTCTCTTGCTTGTTGGTGTTGACAATTTTCCTTTTTCTTGCATTTTCCATTGTGCTAACGCATTTCTGGATCGGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

472

Amino Acids

53.06

Weight (kDa)

4.98

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1146
AccII CGCG 2 cut(s) 760, 762
AccIII TCCGGA 1 cut(s) 1288
AciI CCGC 5 cut(s) 412, 445, 704, 758, 842
AclWI GGATC 7 cut(s) 188, 716, 815, 1028, 1233, 1250, 1410
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 2 cut(s) 188, 945
AcuI CTGAAG 4 cut(s) 815, 876, 942, 1103
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 3 cut(s) 324, 649, 1139
AflIII ACRYGT 1 cut(s) 1168
AhdI GACNNNNNGTC 1 cut(s) 1054
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
AluBI AGCT 7 cut(s) 69, 346, 665, 775, 899, 1114, 1309
AluI AGCT 7 cut(s) 69, 346, 665, 775, 899, 1114, 1309
Alw21I GWGCWC 2 cut(s) 533, 1116
Alw26I GTCTC 1 cut(s) 1104
AlwI GGATC 7 cut(s) 188, 716, 815, 1028, 1233, 1250, 1410
Ama87I CYCGRG 1 cut(s) 905
Aor13HI TCCGGA 1 cut(s) 1288
AoxI GGCC 2 cut(s) 8, 164
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 2 cut(s) 188, 945
AseI ATTAAT 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 927
AspA2I CCTAGG 2 cut(s) 323, 586
AspLEI GCGC 3 cut(s) 762, 764, 1147
AspS9I GGNCC 3 cut(s) 8, 1205, 1273
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 8 cut(s) 257, 443, 449, 575, 718, 791, 922, 1169
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 2 cut(s) 1205, 1273
AvrII CCTAGG 2 cut(s) 323, 586
AxyI CCTNAGG 1 cut(s) 1209
BanII GRGCYC 1 cut(s) 1116
BarI GAAGNNNNNNTAC 2 cut(s) 1305, 1337
BbsI GAAGAC 2 cut(s) 852, 1313
Bbv12I GWGCWC 2 cut(s) 533, 1116
BbvI GCAGC 1 cut(s) 658
BccI CCATC 9 cut(s) 19, 267, 327, 344, 367, 422, 428, 479, 605
BceAI ACGGC 1 cut(s) 1302
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 6 cut(s) 202, 247, 676, 708, 961, 1018
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 1104
BfaI CTAG 5 cut(s) 324, 347, 587, 1202, 1229
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 2 cut(s) 413, 647
BlnI CCTAGG 2 cut(s) 323, 586
BlsI GCNGC 2 cut(s) 414, 648
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 1205, 1273
BmeRI GACNNNNNGTC 1 cut(s) 1054
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 3 cut(s) 8, 1205, 1273
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 68, 583, 877
BpiI GAAGAC 2 cut(s) 852, 1313
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
Bpu10I CCTNAGC 1 cut(s) 1026
BpuEI CTTGAG 2 cut(s) 141, 161
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 960
BsaJI CCNNGG 3 cut(s) 323, 586, 906
BsaWI WCCGGW 1 cut(s) 1288
BsaXI ACNNNNNCTCC 4 cut(s) 606, 636, 793, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 649, 1139
Bse1I ACTGG 5 cut(s) 403, 463, 473, 725, 801
Bse21I CCTNAGG 1 cut(s) 1209
Bse8I GATNNNNATC 1 cut(s) 960
BseAI TCCGGA 1 cut(s) 1288
BseDI CCNNGG 3 cut(s) 323, 586, 906
BseGI GGATG 9 cut(s) 259, 319, 359, 490, 607, 616, 868, 898, 901
BseJI GATNNNNATC 1 cut(s) 960
BseLI CCNNNNNNNGG 3 cut(s) 324, 649, 1139
BseMII CTCAG 3 cut(s) 1040, 1200, 1315
BseNI ACTGG 5 cut(s) 403, 463, 473, 725, 801
BsePI GCGCGC 1 cut(s) 760
BseRI GAGGAG 2 cut(s) 555, 611
BseXI GCAGC 1 cut(s) 658
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 2 cut(s) 760, 762
BshFI GGCC 2 cut(s) 10, 166
BsiHKAI GWGCWC 2 cut(s) 533, 1116
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 2 cut(s) 167, 1289
BslFI GGGAC 2 cut(s) 807, 1061
BslI CCNNNNNNNGG 3 cut(s) 324, 649, 1139
BsmAI GTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 807, 1061
BsnI GGCC 2 cut(s) 10, 166
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 2 cut(s) 533, 1116
Bsp13I TCCGGA 1 cut(s) 1288
BspACI CCGC 5 cut(s) 412, 445, 704, 758, 842
BspANI GGCC 2 cut(s) 10, 166
BspCNI CTCAG 3 cut(s) 1039, 1201, 1314
BspEI TCCGGA 1 cut(s) 1288
BspFNI CGCG 2 cut(s) 760, 762
BspPI GGATC 7 cut(s) 188, 716, 815, 1028, 1233, 1250, 1410
BsrI ACTGG 5 cut(s) 403, 463, 473, 725, 801
BssECI CCNNGG 3 cut(s) 323, 586, 906
BssHII GCGCGC 1 cut(s) 760
BssT1I CCWWGG 2 cut(s) 323, 586
Bst4CI ACNGT 4 cut(s) 289, 535, 851, 917
BstC8I GCNNGC 5 cut(s) 449, 663, 762, 1237, 1307
BstDEI CTNAG 4 cut(s) 468, 1026, 1209, 1301
BstF5I GGATG 9 cut(s) 259, 319, 359, 490, 607, 616, 868, 898, 901
BstFNI CGCG 2 cut(s) 760, 762
BstHHI GCGC 3 cut(s) 762, 764, 1147
BstMAI GTCTC 1 cut(s) 1104
BstMWI GCNNNNNNNGC 3 cut(s) 386, 662, 1193
BstNSI RCATGY 1 cut(s) 1172
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 2 cut(s) 760, 762
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 2 cut(s) 852, 1313
BstX2I RGATCY 4 cut(s) 721, 820, 1033, 1225
BstXI CCANNNNNNTGG 1 cut(s) 1044
BstYI RGATCY 4 cut(s) 721, 820, 1033, 1225
Bsu36I CCTNAGG 1 cut(s) 1209
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 10, 166
BtsCI GGATG 9 cut(s) 259, 319, 359, 490, 607, 616, 868, 898, 901
BtsIMutI CAGTG 2 cut(s) 480, 1005
Cac8I GCNNGC 5 cut(s) 449, 663, 762, 1237, 1307
CfoI GCGC 3 cut(s) 762, 764, 1147
Cfr13I GGNCC 3 cut(s) 8, 1205, 1273
Csp6I GTAC 1 cut(s) 491
CviAII CATG 6 cut(s) 15, 425, 526, 1022, 1148, 1169
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 4 cut(s) 468, 1026, 1209, 1301
DraI TTTAAA 1 cut(s) 1218
DriI GACNNNNNGTC 1 cut(s) 1054
EaeI YGGCCR 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 1054
Ecl136II GAGCTC 1 cut(s) 1114
Eco130I CCWWGG 2 cut(s) 323, 586
Eco24I GRGCYC 1 cut(s) 1116
Eco47I GGWCC 2 cut(s) 1205, 1273
Eco53kI GAGCTC 1 cut(s) 1114
Eco57I CTGAAG 4 cut(s) 815, 876, 942, 1103
Eco81I CCTNAGG 1 cut(s) 1209
Eco88I CYCGRG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 1114
EcoO109I RGGNCCY 1 cut(s) 1205
EcoT14I CCWWGG 2 cut(s) 323, 586
EcoT22I ATGCAT 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 1116
ErhI CCWWGG 2 cut(s) 323, 586
FaeI CATG 6 cut(s) 18, 428, 529, 1025, 1151, 1172
FaqI GGGAC 2 cut(s) 807, 1061
FatI CATG 6 cut(s) 14, 424, 525, 1021, 1147, 1168
FbaI TGATCA 6 cut(s) 202, 247, 676, 708, 961, 1018
Fnu4HI GCNGC 2 cut(s) 413, 647
FokI GGATG 9 cut(s) 246, 306, 346, 497, 614, 623, 855, 888, 905
FriOI GRGCYC 1 cut(s) 1116
Fsp4HI GCNGC 2 cut(s) 413, 647
FspAI RTGCGCAY 1 cut(s) 1146
FspBI CTAG 5 cut(s) 324, 347, 587, 1202, 1229
FspI TGCGCA 1 cut(s) 1146
GlaI GCGC 3 cut(s) 761, 763, 1146
GluI GCNGC 2 cut(s) 413, 647
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 10, 166
HapII CCGG 2 cut(s) 167, 1289
HhaI GCGC 3 cut(s) 762, 764, 1147
Hin1II CATG 6 cut(s) 18, 428, 529, 1025, 1151, 1172
Hin6I GCGC 3 cut(s) 760, 762, 1145
HinP1I GCGC 3 cut(s) 760, 762, 1145
HincII GTYRAC 2 cut(s) 880, 1354
HindII GTYRAC 2 cut(s) 880, 1354
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 8 cut(s) 36, 74, 306, 881, 938, 1055, 1073, 1299
HpaII CCGG 2 cut(s) 167, 1289
HphI GGTGA 8 cut(s) 257, 443, 449, 575, 718, 791, 922, 1169
Hpy166II GTNNAC 5 cut(s) 173, 880, 913, 1160, 1354
Hpy188I TCNGA 4 cut(s) 539, 943, 1122, 1298
Hpy8I GTNNAC 5 cut(s) 173, 880, 913, 1160, 1354
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 8 cut(s) 296, 456, 601, 822, 1076, 1085, 1127, 1216
HpyCH4III ACNGT 4 cut(s) 289, 535, 851, 917
HpyCH4V TGCA 6 cut(s) 59, 230, 504, 574, 868, 1374
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 662, 1193
HpyF3I CTNAG 4 cut(s) 468, 1026, 1209, 1301
Hsp92II CATG 6 cut(s) 18, 428, 529, 1025, 1151, 1172
HspAI GCGC 3 cut(s) 760, 762, 1145
Kpn2I TCCGGA 1 cut(s) 1288
Ksp22I TGATCA 6 cut(s) 202, 247, 676, 708, 961, 1018
LmnI GCTCC 2 cut(s) 814, 1119
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 68, 583, 877
MaeI CTAG 5 cut(s) 324, 347, 587, 1202, 1229
MaeIII GTNAC 3 cut(s) 727, 742, 1056
MboII GAAGA 7 cut(s) 520, 821, 857, 869, 935, 1043, 1313
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 4 cut(s) 721, 820, 1033, 1225
MhlI GDGCHC 2 cut(s) 533, 1116
MluCI AATT 7 cut(s) 84, 188, 381, 562, 945, 996, 1357
MlyI GAGTC 3 cut(s) 875, 1064, 1293
MmeI TCCRAC 3 cut(s) 61, 221, 1321
MnlI CCTC 9 cut(s) 533, 536, 589, 592, 765, 901, 1204, 1225, 1296
Mph1103I ATGCAT 1 cut(s) 576
MroI TCCGGA 1 cut(s) 1288
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 5 cut(s) 87, 342, 384, 999, 1217
MslI CAYNNNNRTG 3 cut(s) 429, 873, 1152
MspA1I CMGCKG 2 cut(s) 447, 1309
MspI CCGG 2 cut(s) 167, 1289
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 562
MvnI CGCG 2 cut(s) 760, 762
MwoI GCNNNNNNNGC 3 cut(s) 386, 662, 1193
NciI CCSGG 1 cut(s) 168
NlaIII CATG 6 cut(s) 18, 428, 529, 1025, 1151, 1172
NmuCI GTSAC 2 cut(s) 727, 1056
NsbI TGCGCA 1 cut(s) 1146
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 1172
PauI GCGCGC 1 cut(s) 760
PciI ACATGT 1 cut(s) 1168
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 5 cut(s) 36, 74, 306, 938, 1073
PkrI GCNGC 2 cut(s) 414, 648
PleI GAGTC 3 cut(s) 875, 1063, 1293
PpsI GAGTC 3 cut(s) 875, 1063, 1293
PpuMI RGGWCCY 1 cut(s) 1205
PscI ACATGT 1 cut(s) 1168
PshBI ATTAAT 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 1116
Psp5II RGGWCCY 1 cut(s) 1205
PspFI CCCAGC 1 cut(s) 5
PspPI GGNCC 3 cut(s) 8, 1205, 1273
PspPPI RGGWCCY 1 cut(s) 1205
PsuI RGATCY 4 cut(s) 721, 820, 1033, 1225
PteI GCGCGC 1 cut(s) 760
PvuII CAGCTG 1 cut(s) 1309
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
RseI CAYNNNNRTG 3 cut(s) 429, 873, 1152
SacI GAGCTC 1 cut(s) 1116
SaqAI TTAA 5 cut(s) 87, 342, 384, 999, 1217
SatI GCNGC 2 cut(s) 413, 647
Sau96I GGNCC 3 cut(s) 8, 1205, 1273
SchI GAGTC 3 cut(s) 875, 1064, 1293
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 533, 1116
SfaNI GCATC 3 cut(s) 68, 583, 877
SinI GGWCC 2 cut(s) 1205, 1273
SmiMI CAYNNNNRTG 3 cut(s) 429, 873, 1152
SmlI CTYRAG 2 cut(s) 156, 176
SmoI CTYRAG 2 cut(s) 156, 176
Sse9I AATT 7 cut(s) 84, 188, 381, 562, 945, 996, 1357
SsiI CCGC 5 cut(s) 412, 445, 704, 758, 842
SspI AATATT 2 cut(s) 1246, 1267
SspMI CTAG 5 cut(s) 324, 347, 587, 1202, 1229
SstI GAGCTC 1 cut(s) 1116
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 2 cut(s) 323, 586
TaaI ACNGT 4 cut(s) 289, 535, 851, 917
TasI AATT 7 cut(s) 84, 188, 381, 562, 945, 996, 1357
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 5 cut(s) 36, 74, 306, 938, 1073
Tru1I TTAA 5 cut(s) 87, 342, 384, 999, 1217
Tru9I TTAA 5 cut(s) 87, 342, 384, 999, 1217
TscAI CASTG 2 cut(s) 480, 1012
TseFI GTSAC 2 cut(s) 727, 1056
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 2 cut(s) 727, 1056
TspDTI ATGAA 5 cut(s) 362, 876, 909, 1005, 1164
TspRI CASTG 2 cut(s) 480, 1012
VpaK11BI GGWCC 2 cut(s) 1205, 1273
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 188, 945
XbaI TCTAGA 1 cut(s) 1228
XceI RCATGY 1 cut(s) 1172
XmaJI CCTAGG 2 cut(s) 323, 586
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 5 cut(s) 324, 347, 587, 1202, 1229
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.