pycom16g04220
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012399
Physical Location & Seq
Reverse (-)
2618568 .. 2619804
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04220.3

Sequence Viewer

Length: 861 bp
ATGGTTCTATACATGAGCACGGTCAGAGGAGAAAAACCTGTGAAAACCAATTGGGTTATGCATCAATATCACCTAGGCGTTGAGGAGGATGAGAAGGATGGAGAATATGTTATATCTAAAATATATTACCAGCAGCAGGAAGCTAAGGAAGCTGATAAAACTGATCAAGATGTTCCTGAAAGTATTGATGCGGTGATCACCAAGGTAGATCCAGTCACTCCCAAGTCGGTTACTCCTGAACCTCCGCGCGCTGAACGAAAGCTTGGTGATTTTGATTTGGGATTGGATACTCCTGCTCCTTCCAGAGATCCCTTTCTTCAGTATCGTGTGGAGGATGGTGCTGAAGATGAGGATGAAGTTCATTTTGAGGTGGACCGTGCTTTAGATGAAATTCATCCAGAGGTGGACTGTGCTGAAGATGATGTTTGTCCTGAATCTGAAATGCCTGACGATTATGACCAACACAAGTTAGAAAATCAAGCCGATGAAGTAATTAATAACACTGAAAACATTGCTCAGGAAGATCCATCCGTTAAATGGTGGGACAGTGAGTCACAGAATCTTCTGGATTCGCAACAACTTGTGGAAGGGTTGTCTCTGTGTGATGATCTCCTTCAGAGCCAATCTCCAACTAGGGGTGGACGTGAAAATGGTGAACAAGCACACATCAAACCCCGTCTTGCTGATTATGCTAAACTAGGACCAGAGGATTTAAAGAGGGATCTAGAGGCTTGTCAAAATCTTGTCCTCGATCCTGCTAATATTTTGGAACTCGATACACCTCCAGATTTCCGACTTAGCCAGCTGGAATTCGGGTCACAGGAAAGTTTCCTTTCTTGGGGTGGCAAGGTGGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

287

Amino Acids

32.39

Weight (kDa)

4.21

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 247, 249
AciI CCGC 2 cut(s) 191, 245
AclWI GGATC 5 cut(s) 203, 302, 518, 729, 746
AcsI RAATTY 2 cut(s) 390, 809
AcuI CTGAAG 4 cut(s) 302, 363, 435, 599
AfiI CCNNNNNNNGG 4 cut(s) 136, 537, 635, 838
AhdI GACNNNNNGTC 1 cut(s) 550
AjiI CACGTC 1 cut(s) 644
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 4 cut(s) 143, 152, 262, 805
AluI AGCT 4 cut(s) 143, 152, 262, 805
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 5 cut(s) 203, 302, 518, 729, 746
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 2 cut(s) 390, 809
AseI ATTAAT 1 cut(s) 495
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 2 cut(s) 249, 251
AspS9I GGNCC 2 cut(s) 373, 701
AsuHPI GGTGA 5 cut(s) 62, 190, 205, 278, 665
AvaII GGWCC 2 cut(s) 373, 701
AvrII CCTAGG 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 145
BccI CCATC 3 cut(s) 92, 329, 535
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 2 cut(s) 163, 195
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 4 cut(s) 74, 633, 698, 725
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 1 cut(s) 134
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 373, 701
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 373, 701
BmsI GCATC 2 cut(s) 70, 178
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 768
Bpu10I CCTNAGC 2 cut(s) 144, 516
BsaJI CCNNGG 2 cut(s) 73, 201
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 280, 310
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 537, 635, 838
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 73, 201
BseGI GGATG 6 cut(s) 94, 103, 340, 358, 394, 527
BseLI CCNNNNNNNGG 4 cut(s) 136, 537, 635, 838
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 212
BsePI GCGCGC 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 42, 98
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 2 cut(s) 247, 249
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 4 cut(s) 136, 537, 635, 838
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
BspACI CCGC 2 cut(s) 191, 245
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 2 cut(s) 247, 249
BspPI GGATC 5 cut(s) 203, 302, 518, 729, 746
BsrDI GCAATG 1 cut(s) 510
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 73, 201
BssHII GCGCGC 1 cut(s) 247
BssMI GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
BssT1I CCWWGG 2 cut(s) 73, 201
Bst4CI ACNGT 4 cut(s) 22, 377, 410, 548
BstC8I GCNNGC 2 cut(s) 249, 803
BstDEI CTNAG 3 cut(s) 144, 516, 797
BstF5I GGATG 6 cut(s) 94, 103, 340, 358, 394, 527
BstFNI CGCG 2 cut(s) 247, 249
BstHHI GCGC 2 cut(s) 249, 251
BstKTI GATC 8 cut(s) 166, 198, 211, 310, 526, 610, 724, 754
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
BstMWI GCNNNNNNNGC 2 cut(s) 149, 689
BstUI CGCG 2 cut(s) 247, 249
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 4 cut(s) 208, 307, 523, 721
BstYI RGATCY 4 cut(s) 208, 307, 523, 721
BsuI GTATCC 1 cut(s) 280
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 6 cut(s) 94, 103, 340, 358, 394, 527
BtsIMutI CAGTG 2 cut(s) 501, 553
Cac8I GCNNGC 2 cut(s) 249, 803
CfoI GCGC 2 cut(s) 249, 251
Cfr13I GGNCC 2 cut(s) 373, 701
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 143, 152, 262, 482, 621, 731, 801, 805, 854
CviKI_1 RGCY 9 cut(s) 143, 152, 262, 482, 621, 731, 801, 805, 854
DdeI CTNAG 3 cut(s) 144, 516, 797
DpnI GATC 8 cut(s) 165, 197, 210, 309, 525, 609, 723, 753
DpnII GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
DraI TTTAAA 1 cut(s) 714
DriI GACNNNNNGTC 1 cut(s) 550
Eam1105I GACNNNNNGTC 1 cut(s) 550
Eco130I CCWWGG 2 cut(s) 73, 201
Eco47I GGWCC 2 cut(s) 373, 701
Eco57I CTGAAG 4 cut(s) 302, 363, 435, 599
EcoRI GAATTC 1 cut(s) 809
EcoT14I CCWWGG 2 cut(s) 73, 201
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 73, 201
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 10, 14, 59, 108, 113, 124, 456, 690
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 12
FbaI TGATCA 2 cut(s) 163, 195
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 6 cut(s) 101, 110, 347, 365, 381, 514
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 4 cut(s) 74, 633, 698, 725
GlaI GCGC 2 cut(s) 248, 250
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 768
HhaI GCGC 2 cut(s) 249, 251
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 247, 249
HinP1I GCGC 2 cut(s) 247, 249
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 434, 551, 559, 569
HphI GGTGA 5 cut(s) 62, 190, 205, 278, 665
Hpy166II GTNNAC 4 cut(s) 373, 406, 641, 656
Hpy188I TCNGA 4 cut(s) 26, 439, 618, 794
Hpy8I GTNNAC 4 cut(s) 373, 406, 641, 656
HpyAV CCTTC 4 cut(s) 88, 309, 581, 623
HpyCH4III ACNGT 4 cut(s) 22, 377, 410, 548
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 689
HpyF3I CTNAG 3 cut(s) 144, 516, 797
HpySE526I ACGT 1 cut(s) 643
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 247, 249
Ksp22I TGATCA 2 cut(s) 163, 195
Kzo9I GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 70, 178
MaeI CTAG 4 cut(s) 74, 633, 698, 725
MaeII ACGT 1 cut(s) 643
MaeIII GTNAC 4 cut(s) 214, 229, 552, 816
MalI GATC 8 cut(s) 165, 197, 210, 309, 525, 609, 723, 753
MboI GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
MboII GAAGA 5 cut(s) 308, 356, 428, 533, 554
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 4 cut(s) 208, 307, 523, 721
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 4 cut(s) 49, 390, 492, 809
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 653, 817
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 3 cut(s) 495, 534, 713
MspA1I CMGCKG 1 cut(s) 805
MunI CAATTG 1 cut(s) 49
MvnI CGCG 2 cut(s) 247, 249
MwoI GCNNNNNNNGC 2 cut(s) 149, 689
NdeII GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
NlaIII CATG 1 cut(s) 16
NmuCI GTSAC 3 cut(s) 214, 552, 816
NsiI ATGCAT 1 cut(s) 63
PauI GCGCGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 434, 559, 569
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PshBI ATTAAT 1 cut(s) 495
PspPI GGNCC 2 cut(s) 373, 701
PsuI RGATCY 4 cut(s) 208, 307, 523, 721
PteI GCGCGC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 805
SaqAI TTAA 3 cut(s) 495, 534, 713
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 8 cut(s) 163, 195, 208, 307, 523, 607, 721, 751
Sau96I GGNCC 2 cut(s) 373, 701
SchI GAGTC 1 cut(s) 560
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 2 cut(s) 70, 178
SinI GGWCC 2 cut(s) 373, 701
Sse9I AATT 4 cut(s) 49, 390, 492, 809
SsiI CCGC 2 cut(s) 191, 245
SspI AATATT 1 cut(s) 763
SspMI CTAG 4 cut(s) 74, 633, 698, 725
StyI CCWWGG 2 cut(s) 73, 201
TaaI ACNGT 4 cut(s) 22, 377, 410, 548
TaiI ACGT 1 cut(s) 646
TaqI TCGA 2 cut(s) 750, 774
TasI AATT 4 cut(s) 49, 390, 492, 809
TfiI GAWTC 3 cut(s) 434, 559, 569
Tru1I TTAA 3 cut(s) 495, 534, 713
Tru9I TTAA 3 cut(s) 495, 534, 713
TscAI CASTG 2 cut(s) 508, 553
TseFI GTSAC 3 cut(s) 214, 552, 816
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 3 cut(s) 214, 552, 816
TspDTI ATGAA 5 cut(s) 350, 369, 383, 402, 501
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 2 cut(s) 508, 553
VpaK11BI GGWCC 2 cut(s) 373, 701
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 2 cut(s) 390, 809
XbaI TCTAGA 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 4 cut(s) 74, 633, 698, 725
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.