MD13G1046600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012399
Physical Location & Seq
Reverse (-)
3226751 .. 3230841
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1046600.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGCTGGGCCATCATGGTTGTTTGACAAAAATAGAATCGCAACAAAAATCAGGAGTGCATCTGGAAGCTATGATTCTGTTGGAATTAAATGGCAAAGCAACCCAACTAAATCTTGTCCAAAATGCCAATATACGATGGACAATAGTGATGTTGCTCAAGAGTGGCCGGGTTTACCCAAGGGTGTAAAATTTGATCCAACCGATCAAGAGATTATGTGGCACTTACTAGCAAAATCTGGTGTAGGTGATCAAAAACCCCATCCTTTTATTGATGAGTTTATTCTAACTGTCGATGACGACGAAGGAATCTGTTGTTCCCATCCTAGGAAACTACCTAATGTTAAGCTAGATGGAAGTCCATCCCACTTCTTTCATAGAGCAATTAAGGCTTACAATACTGGAACACGAAAGCGGCGAAAGATACATGATGGTGATGGTGATGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCAGTGATCTTGGATGGAGTACAAAGAGGGTGCAAGAAGATTATGGTTCTATACATGAGCACGGTCGGAGGAGGAAAACCTGTGAAAACCAATTGGGTTATGCATCAATATCACCTAGGCATTGAGGAGGATGAGAAGGATGGAGAGTATGTTATATCAAAAATATATTACCAGCAGCAGGAAGCCAAGCAAGCTGATAAAACTGATCAAGATGTTCCTGAAAGTATTGATGCGGTGATCACAAAGGTAGATCCAGTCACTCCCAAGTCGGCTACTCCTGAACCTCCACGCGCCGAACGAAAGCTTGGTGATTTTCATTTGGGACTGGATACTCCTGCTCCGTCCAGAGATCCCCTTCTTCAGTATCGTGAGGAAGACGGTGCTGAAGATGAAGTGCGTCCTGATGTAGACTCTGCTTTGGATGAAGTTCATCCCGAGGTGAACCGTGCTGAAGATGTTCGCCCTGAATCTGAAATTCCTGACGATTATGATCAACACAAGGTAGAAAACCAAGCCGATGAAGTAATTAATAACACTGAAAACATTGATCATGCTCAGGAAGATCCAAAATGGTGGGACAATGAGTCACAGAACCTTCTGGATTCGCAACAACTTGTGGAAGGGTTGTCTCTGTGTGATGAGCTCCTTCAGAGCCAATCTCCAAATAGGGGTGGGCATGAAAATGGTGAACAAGCACATGTCAAACCCCGTCTTGCTGATTATGCTAAACTAGGACCTGAGGATTTAAAGAAGGATCTAGAGGCATGCCAAAATATTGTCCTTGATCCTGCTAATATTATGGACCTTGATACACCTCCTGATTTCCGACTCAGCCAGCTGGAATTTGGGTCACAGGAGAGTTTCCTTTCTTGGGGTGGCAAGGTGGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

457

Amino Acids

51.29

Weight (kDa)

4.88

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 59 - 198 9.6e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 885
AccII CGCG 1 cut(s) 768
AciI CCGC 3 cut(s) 412, 451, 710
AclWI GGATC 6 cut(s) 188, 722, 821, 1034, 1239, 1256
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 188, 951, 1319
AcuI CTGAAG 4 cut(s) 821, 882, 948, 1109
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 324, 655, 1145, 1348
AflIII ACRYGT 1 cut(s) 1174
AhdI GACNNNNNGTC 1 cut(s) 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 6 cut(s) 69, 346, 671, 781, 1120, 1315
AluI AGCT 6 cut(s) 69, 346, 671, 781, 1120, 1315
Alw21I GWGCWC 2 cut(s) 539, 1122
Alw26I GTCTC 1 cut(s) 1110
AlwI GGATC 6 cut(s) 188, 722, 821, 1034, 1239, 1256
Ama87I CYCGRG 1 cut(s) 911
AoxI GGCC 2 cut(s) 8, 164
ApeKI GCWGC 1 cut(s) 652
ApoI RAATTY 3 cut(s) 188, 951, 1319
AseI ATTAAT 1 cut(s) 1005
Asp700I GAANNNNTTC 1 cut(s) 933
AspA2I CCTAGG 2 cut(s) 323, 592
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 3 cut(s) 8, 1211, 1279
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 9 cut(s) 257, 443, 449, 455, 581, 724, 797, 928, 1175
AvaI CYCGRG 1 cut(s) 911
AvaII GGWCC 2 cut(s) 1211, 1279
AvrII CCTAGG 2 cut(s) 323, 592
AxyI CCTNAGG 1 cut(s) 1215
BanII GRGCYC 1 cut(s) 1122
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 2 cut(s) 539, 1122
BbvI GCAGC 1 cut(s) 664
BciVI GTATCC 1 cut(s) 799
BclI TGATCA 5 cut(s) 247, 682, 714, 967, 1024
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 1110
BfaI CTAG 6 cut(s) 227, 324, 347, 593, 1208, 1235
BfuI GTATCC 1 cut(s) 799
BisI GCNGC 2 cut(s) 413, 653
BlnI CCTAGG 2 cut(s) 323, 592
BlsI GCNGC 2 cut(s) 414, 654
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 1211, 1279
BmeRI GACNNNNNGTC 1 cut(s) 1060
BmeT110I CYCGRG 1 cut(s) 911
BmgT120I GGNCC 3 cut(s) 8, 1211, 1279
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 68, 589, 697
BpiI GAAGAC 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
Bpu10I CCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 966
BsaJI CCNNGG 4 cut(s) 177, 323, 592, 912
BsaXI ACNNNNNCTCC 4 cut(s) 612, 642, 799, 829
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 655, 1145, 1348
Bse1I ACTGG 5 cut(s) 403, 469, 479, 731, 807
Bse21I CCTNAGG 1 cut(s) 1215
Bse8I GATNNNNATC 1 cut(s) 966
BseDI CCNNGG 4 cut(s) 177, 323, 592, 912
BseGI GGATG 8 cut(s) 259, 319, 359, 496, 613, 622, 904, 907
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 4 cut(s) 324, 655, 1145, 1348
BseMII CTCAG 3 cut(s) 1046, 1206, 1321
BseNI ACTGG 5 cut(s) 403, 469, 479, 731, 807
BseRI GAGGAG 2 cut(s) 561, 617
BseXI GCAGC 1 cut(s) 664
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 768
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 10, 166
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 539, 1122
BsiHKCI CYCGRG 1 cut(s) 911
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 813, 1067
BslI CCNNNNNNNGG 4 cut(s) 324, 655, 1145, 1348
BsmAI GTCTC 1 cut(s) 1110
BsmFI GGGAC 2 cut(s) 813, 1067
BsnI GGCC 2 cut(s) 10, 166
BsoBI CYCGRG 1 cut(s) 911
Bsp1286I GDGCHC 2 cut(s) 539, 1122
BspACI CCGC 3 cut(s) 412, 451, 710
BspANI GGCC 2 cut(s) 10, 166
BspCNI CTCAG 3 cut(s) 1045, 1207, 1320
BspFNI CGCG 1 cut(s) 768
BspPI GGATC 6 cut(s) 188, 722, 821, 1034, 1239, 1256
BsrI ACTGG 5 cut(s) 403, 469, 479, 731, 807
BssECI CCNNGG 4 cut(s) 177, 323, 592, 912
BssT1I CCWWGG 3 cut(s) 177, 323, 592
Bst4CI ACNGT 4 cut(s) 289, 541, 857, 923
BstC8I GCNNGC 4 cut(s) 455, 669, 1243, 1313
BstDEI CTNAG 3 cut(s) 1032, 1215, 1307
BstF5I GGATG 8 cut(s) 259, 319, 359, 496, 613, 622, 904, 907
BstFNI CGCG 1 cut(s) 768
BstHHI GCGC 1 cut(s) 770
BstMAI GTCTC 1 cut(s) 1110
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 3 cut(s) 386, 668, 1199
BstNSI RCATGY 2 cut(s) 1178, 1245
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 4 cut(s) 727, 826, 1039, 1231
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 4 cut(s) 727, 826, 1039, 1231
Bsu36I CCTNAGG 1 cut(s) 1215
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 2 cut(s) 10, 166
BtsCI GGATG 8 cut(s) 259, 319, 359, 496, 613, 622, 904, 907
BtsIMutI CAGTG 2 cut(s) 486, 1011
Cac8I GCNNGC 4 cut(s) 455, 669, 1243, 1313
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 3 cut(s) 8, 1211, 1279
CseI GACGC 1 cut(s) 863
Csp6I GTAC 1 cut(s) 497
CviAII CATG 7 cut(s) 15, 425, 532, 1028, 1154, 1175, 1242
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 3 cut(s) 1032, 1215, 1307
DraI TTTAAA 1 cut(s) 1224
DriI GACNNNNNGTC 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 1060
Ecl136II GAGCTC 1 cut(s) 1120
Eco130I CCWWGG 3 cut(s) 177, 323, 592
Eco24I GRGCYC 1 cut(s) 1122
Eco47I GGWCC 2 cut(s) 1211, 1279
Eco53kI GAGCTC 1 cut(s) 1120
Eco57I CTGAAG 4 cut(s) 821, 882, 948, 1109
Eco81I CCTNAGG 1 cut(s) 1215
Eco88I CYCGRG 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 1120
EcoO109I RGGNCCY 1 cut(s) 1211
EcoT14I CCWWGG 3 cut(s) 177, 323, 592
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 1122
ErhI CCWWGG 3 cut(s) 177, 323, 592
FaeI CATG 7 cut(s) 18, 428, 535, 1031, 1157, 1178, 1245
FaqI GGGAC 2 cut(s) 813, 1067
FatI CATG 7 cut(s) 14, 424, 531, 1027, 1153, 1174, 1241
FbaI TGATCA 5 cut(s) 247, 682, 714, 967, 1024
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 2 cut(s) 413, 653
FokI GGATG 8 cut(s) 246, 306, 346, 503, 620, 629, 894, 911
FriOI GRGCYC 1 cut(s) 1122
Fsp4HI GCNGC 2 cut(s) 413, 653
FspBI CTAG 6 cut(s) 227, 324, 347, 593, 1208, 1235
GlaI GCGC 1 cut(s) 769
GluI GCNGC 2 cut(s) 413, 653
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 2 cut(s) 10, 166
HapII CCGG 1 cut(s) 167
HgaI GACGC 1 cut(s) 863
HhaI GCGC 1 cut(s) 770
Hin1II CATG 7 cut(s) 18, 428, 535, 1031, 1157, 1178, 1245
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 8 cut(s) 36, 74, 306, 887, 944, 1061, 1079, 1305
HpaII CCGG 1 cut(s) 167
HphI GGTGA 9 cut(s) 257, 443, 449, 455, 581, 724, 797, 928, 1175
Hpy166II GTNNAC 4 cut(s) 173, 886, 919, 1166
Hpy188I TCNGA 4 cut(s) 545, 949, 1128, 1304
Hpy8I GTNNAC 4 cut(s) 173, 886, 919, 1166
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 8 cut(s) 296, 462, 607, 842, 1082, 1091, 1133, 1222
HpyCH4III ACNGT 4 cut(s) 289, 541, 857, 923
HpyCH4V TGCA 3 cut(s) 59, 510, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 668, 1199
HpyF3I CTNAG 3 cut(s) 1032, 1215, 1307
Hsp92II CATG 7 cut(s) 18, 428, 535, 1031, 1157, 1178, 1245
HspAI GCGC 1 cut(s) 768
Ksp22I TGATCA 5 cut(s) 247, 682, 714, 967, 1024
LmnI GCTCC 2 cut(s) 820, 1125
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 3 cut(s) 68, 589, 697
MaeI CTAG 6 cut(s) 227, 324, 347, 593, 1208, 1235
MaeIII GTNAC 3 cut(s) 733, 1062, 1326
MboII GAAGA 6 cut(s) 526, 827, 863, 875, 941, 1049
MfeI CAATTG 1 cut(s) 568
MflI RGATCY 4 cut(s) 727, 826, 1039, 1231
MhlI GDGCHC 2 cut(s) 539, 1122
MluCI AATT 7 cut(s) 84, 188, 381, 568, 951, 1002, 1319
MlyI GAGTC 3 cut(s) 881, 1070, 1299
MmeI TCCRAC 4 cut(s) 61, 221, 523, 1327
Mph1103I ATGCAT 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 933
MseI TTAA 5 cut(s) 87, 342, 384, 1005, 1223
MslI CAYNNNNRTG 2 cut(s) 429, 1158
MspA1I CMGCKG 2 cut(s) 453, 1315
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 568
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 3 cut(s) 386, 668, 1199
NciI CCSGG 1 cut(s) 168
NlaIII CATG 7 cut(s) 18, 428, 535, 1031, 1157, 1178, 1245
NmuCI GTSAC 3 cut(s) 733, 1062, 1326
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 2 cut(s) 1178, 1245
PaeI GCATGC 1 cut(s) 1245
PciI ACATGT 1 cut(s) 1174
PcsI WCGNNNNNNNCGW 3 cut(s) 297, 412, 772
PdmI GAANNNNTTC 1 cut(s) 933
PfeI GAWTC 5 cut(s) 36, 74, 306, 944, 1079
PkrI GCNGC 2 cut(s) 414, 654
PleI GAGTC 3 cut(s) 881, 1069, 1299
PpsI GAGTC 3 cut(s) 881, 1069, 1299
PpuMI RGGWCCY 1 cut(s) 1211
PscI ACATGT 1 cut(s) 1174
PshBI ATTAAT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 1122
Psp5II RGGWCCY 1 cut(s) 1211
PspFI CCCAGC 1 cut(s) 5
PspPI GGNCC 3 cut(s) 8, 1211, 1279
PspPPI RGGWCCY 1 cut(s) 1211
PsuI RGATCY 4 cut(s) 727, 826, 1039, 1231
PvuII CAGCTG 1 cut(s) 1315
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 2 cut(s) 429, 1158
SacI GAGCTC 1 cut(s) 1122
SaqAI TTAA 5 cut(s) 87, 342, 384, 1005, 1223
SatI GCNGC 2 cut(s) 413, 653
Sau96I GGNCC 3 cut(s) 8, 1211, 1279
SchI GAGTC 3 cut(s) 881, 1070, 1299
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 539, 1122
SfaNI GCATC 3 cut(s) 68, 589, 697
SinI GGWCC 2 cut(s) 1211, 1279
SmiMI CAYNNNNRTG 2 cut(s) 429, 1158
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
SphI GCATGC 1 cut(s) 1245
Sse9I AATT 7 cut(s) 84, 188, 381, 568, 951, 1002, 1319
SsiI CCGC 3 cut(s) 412, 451, 710
SspI AATATT 2 cut(s) 1252, 1273
SspMI CTAG 6 cut(s) 227, 324, 347, 593, 1208, 1235
SstI GAGCTC 1 cut(s) 1122
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 3 cut(s) 177, 323, 592
TaaI ACNGT 4 cut(s) 289, 541, 857, 923
TaqI TCGA 1 cut(s) 291
TasI AATT 7 cut(s) 84, 188, 381, 568, 951, 1002, 1319
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 5 cut(s) 36, 74, 306, 944, 1079
Tru1I TTAA 5 cut(s) 87, 342, 384, 1005, 1223
Tru9I TTAA 5 cut(s) 87, 342, 384, 1005, 1223
TscAI CASTG 2 cut(s) 486, 1018
TseFI GTSAC 3 cut(s) 733, 1062, 1326
TseI GCWGC 1 cut(s) 652
Tsp45I GTSAC 3 cut(s) 733, 1062, 1326
TspDTI ATGAA 7 cut(s) 362, 782, 882, 896, 915, 1011, 1170
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 2 cut(s) 486, 1018
VpaK11BI GGWCC 2 cut(s) 1211, 1279
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 3 cut(s) 188, 951, 1319
XbaI TCTAGA 1 cut(s) 1234
XceI RCATGY 2 cut(s) 1178, 1245
XcmI CCANNNNNNNNNTGG 1 cut(s) 1319
XmaJI CCTAGG 2 cut(s) 323, 592
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 933
XspI CTAG 6 cut(s) 227, 324, 347, 593, 1208, 1235
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.