Rh4AG344200
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012399
Physical Location & Seq
Reverse (-)
65246478 .. 65250895
4418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG344200.1

Sequence Viewer

Length: 1524 bp
ATGGCCGGACCTTCGTGGTTGGTGGACAAAAAGAGAATCGCAACAAAAATCAGGAATGCATCTACAAGTGATCCTGCAAGAATCAAATGGCAAAGCAATCCAACTAGAGCTTGCCCAAACTGCCAATATATGATTGACAACAGTGATGTTGCTCAAGAGTGGCCAGGATTACCCAAGGGTGTGAAATTTGATCCAACTGATCAAGAGATTATATGGCACTTGCTTGCAAAAACTGGTGCAGGGGATTTGAGACCCCATCCTTTTATTGATGCATTTATCACGGACTTTGATGATGATGAGGGAGTCTTATGTTCCCATCCAAAGAAACTACCAGGTATTAAGCAAGATGGAAGTGTATCCCACTTCTTTCATTTAGCAATTAAGGCTTACAACACTGGAACTCGAAAGCGTCGAAAAATACATGATGATGAGTATGGTGATATCCGCTGGCACAAGACTGGAAGGACTAAACCAGTGATCTTGGATGGGGTTCAAAGAGGGTGCAAGAAGATTATGGTTCTGTATACAAGCATGGCCAAAGGAGGCAAAGCTGAGAAGACCAATTGGGTCATGCATCAATATCACCTGGGAACTGATGAGGATGAGAAGGATGGGGAGTATGTAATTTCTAAAATATATTACCAGCAACAGCAAGTCAAGCAAGCTGATAAAACTGATCAAAATTCTCCTGAAACTAGTGATCCTGTGATTCAAGCAGATCCAGTTACTCCCAAGTCGGTGATTCCTGAAACTCTGGACCCTGCTTTCAATTTGGGAGAAGATATTCCTGCGGCTTGCACAGAACCCAAGTCAATAACTCCTGAACCTCCACGCCCTGAAAGGAGACATTCTAATCTTGGTTTGGGGGAAGATACTCATGTTGCTTCCACAGATCCCTTTCTTCAAATGCAACTGAAGCATCATGATATGGACTTTTTTGAAGATGAAGTTCATCATGAATATGAAAAGTCTGGCTGTCATGATCAACACAGCATAGAGATTCCAAATGATGAAGCAATAAACAACAATGTAAATCATACTCAGGAAGATCCAAAGTGGTGGGACAGTGAGTCACAGAATCTACTGGATTCACAACAACTTGTGGAAGGCTTGTCTTTATGTGATGATCTTCTTCAGAGCCAATCTCCAACTAGGGGTGAACATGGAACTGGTGAACCAGCACAGGTCAAACCCTGTCTTGCTGATTATGCTAAGCTAGGAGCAGATGATTTAAAGAAGGATCTAGAGGAGTGCCAAAATATTGTCCTCGATCCTGCTAACATGGAACTTGGAACACCTCCAGATTTCCGACTTAGCCAGCTCGTACGTTGTCTTTTCCGCCCATGGTTCTTACATATTATTGAATTAGCCAAATTATATATTCTTTGCATTTTCTCTTATGGTAATGCATTTCTTAATTGCTTTTGTAGGAATTCGAATCACAGGAAAGTTTCCTTTCTTGGGGTGGCAAATTGGCTGAGTGATTATGGCTGCACTAGCACACTAGTAGCAACTATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

507

Amino Acids

57.35

Weight (kDa)

5.49

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 58 - 196 1.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 524
AciI CCGC 3 cut(s) 445, 791, 1339
AclWI GGATC 8 cut(s) 65, 185, 695, 713, 887, 1043, 1248, 1265
AcoI YGGCCR 3 cut(s) 3, 161, 534
AcsI RAATTY 3 cut(s) 185, 682, 1432
AcuI CTGAAG 2 cut(s) 935, 1118
AfaI GTAC 1 cut(s) 1326
AfiI CCNNNNNNNGG 2 cut(s) 1154, 1461
AgsI TTSAA 6 cut(s) 494, 713, 769, 905, 941, 1364
AhdI GACNNNNNGTC 1 cut(s) 1069
AhlI ACTAGT 2 cut(s) 695, 1504
AjnI CCWGG 3 cut(s) 163, 331, 585
AluBI AGCT 5 cut(s) 110, 551, 665, 1216, 1321
AluI AGCT 5 cut(s) 110, 551, 665, 1216, 1321
Alw26I GTCTC 2 cut(s) 244, 838
AlwI GGATC 8 cut(s) 65, 185, 695, 713, 887, 1043, 1248, 1265
AoxI GGCC 3 cut(s) 3, 161, 534
ApeKI GCWGC 1 cut(s) 1491
ApoI RAATTY 3 cut(s) 185, 682, 1432
Asp700I GAANNNNTTC 1 cut(s) 783
AspS9I GGNCC 2 cut(s) 8, 757
AsuHPI GGTGA 5 cut(s) 449, 575, 751, 1169, 1184
AsuII TTCGAA 1 cut(s) 1436
AvaII GGWCC 2 cut(s) 8, 757
BaeI ACNNNNGTAYC 2 cut(s) 864, 897
BalI TGGCCA 2 cut(s) 163, 536
BbsI GAAGAC 1 cut(s) 563
BbvI GCAGC 1 cut(s) 1478
BccI CCATC 5 cut(s) 264, 324, 341, 479, 605
BciT130I CCWGG 3 cut(s) 165, 333, 587
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 3 cut(s) 199, 676, 982
BcoDI GTCTC 2 cut(s) 244, 838
BcuI ACTAGT 2 cut(s) 695, 1504
BfaI CTAG 7 cut(s) 105, 696, 1152, 1217, 1244, 1497, 1505
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 792, 1492
BlpI GCTNAGC 1 cut(s) 1212
BlsI GCNGC 2 cut(s) 793, 1493
Bme1390I CCNGG 3 cut(s) 165, 333, 587
Bme18I GGWCC 2 cut(s) 8, 757
BmeRI GACNNNNNGTC 1 cut(s) 1069
BmgT120I GGNCC 2 cut(s) 8, 757
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 3 cut(s) 165, 333, 587
BmsI GCATC 4 cut(s) 68, 259, 583, 928
BpiI GAAGAC 1 cut(s) 563
BplI GAGNNNNNCTC 2 cut(s) 1129, 1161
BpmI CTGGAG 1 cut(s) 1284
Bpu1102I GCTNAGC 1 cut(s) 1212
Bpu14I TTCGAA 1 cut(s) 1436
BpuEI CTTGAG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 174, 586, 1343
Bsc4I CCNNNNNNNGG 2 cut(s) 1154, 1461
Bse1I ACTGG 7 cut(s) 238, 400, 463, 473, 722, 1089, 1174
BseBI CCWGG 3 cut(s) 165, 333, 587
BseDI CCNNGG 3 cut(s) 174, 586, 1343
BseGI GGATG 5 cut(s) 256, 316, 490, 607, 616
BseLI CCNNNNNNNGG 2 cut(s) 1154, 1461
BseMII CTCAG 3 cut(s) 543, 1055, 1469
BseNI ACTGG 7 cut(s) 238, 400, 463, 473, 722, 1089, 1174
BseRI GAGGAG 1 cut(s) 1262
BseXI GCAGC 1 cut(s) 1478
BsgI GTGCAG 2 cut(s) 258, 1477
BshFI GGCC 3 cut(s) 5, 163, 536
BsiSI CCGG 1 cut(s) 6
BsiWI CGTACG 1 cut(s) 1324
BslFI GGGAC 1 cut(s) 1076
BslI CCNNNNNNNGG 2 cut(s) 1154, 1461
BsmAI GTCTC 2 cut(s) 244, 838
BsmFI GGGAC 1 cut(s) 1076
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 3 cut(s) 5, 163, 536
Bso31I GGTCTC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 1436
Bsp1720I GCTNAGC 1 cut(s) 1212
Bsp19I CCATGG 1 cut(s) 1343
BspACI CCGC 3 cut(s) 445, 791, 1339
BspANI GGCC 3 cut(s) 5, 163, 536
BspCNI CTCAG 3 cut(s) 544, 1054, 1470
BspHI TCATGA 3 cut(s) 922, 955, 979
BspLI GGNNCC 1 cut(s) 759
BspPI GGATC 8 cut(s) 65, 185, 695, 713, 887, 1043, 1248, 1265
BspT104I TTCGAA 1 cut(s) 1436
BspTNI GGTCTC 1 cut(s) 244
BsrI ACTGG 7 cut(s) 238, 400, 463, 473, 722, 1089, 1174
BssECI CCNNGG 3 cut(s) 174, 586, 1343
BssNAI GTATAC 1 cut(s) 525
BssT1I CCWWGG 2 cut(s) 174, 1343
Bst1107I GTATAC 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 165, 333, 587
Bst4CI ACNGT 2 cut(s) 143, 1067
BstBI TTCGAA 1 cut(s) 1436
BstC8I GCNNGC 6 cut(s) 112, 225, 449, 663, 796, 1319
BstDEI CTNAG 5 cut(s) 552, 1041, 1212, 1313, 1478
BstDSI CCRYGG 1 cut(s) 1343
BstF5I GGATG 5 cut(s) 256, 316, 490, 607, 616
BstMAI GTCTC 2 cut(s) 244, 838
BstMWI GCNNNNNNNGC 6 cut(s) 120, 383, 658, 916, 1208, 1497
BstNI CCWGG 3 cut(s) 165, 333, 587
BstSCI CCNGG 3 cut(s) 163, 331, 585
BstV1I GCAGC 1 cut(s) 1478
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 4 cut(s) 718, 892, 1048, 1240
BstXI CCANNNNNNTGG 1 cut(s) 1059
BstYI RGATCY 4 cut(s) 718, 892, 1048, 1240
BstZ17I GTATAC 1 cut(s) 525
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 5, 163, 536
BtgI CCRYGG 1 cut(s) 1343
BtsCI GGATG 5 cut(s) 256, 316, 490, 607, 616
BtsIMutI CAGTG 4 cut(s) 148, 393, 480, 1072
Cac8I GCNNGC 6 cut(s) 112, 225, 449, 663, 796, 1319
CciI TCATGA 3 cut(s) 922, 955, 979
Cfr13I GGNCC 2 cut(s) 8, 757
CseI GACGC 1 cut(s) 398
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 1325
CviQI GTAC 1 cut(s) 1325
DdeI CTNAG 5 cut(s) 552, 1041, 1212, 1313, 1478
DraI TTTAAA 1 cut(s) 1233
DriI GACNNNNNGTC 1 cut(s) 1069
EaeI YGGCCR 3 cut(s) 3, 161, 534
Eam1105I GACNNNNNGTC 1 cut(s) 1069
EciI GGCGGA 1 cut(s) 1328
Eco130I CCWWGG 2 cut(s) 174, 1343
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 8, 757
Eco57I CTGAAG 2 cut(s) 935, 1118
EcoRI GAATTC 1 cut(s) 1432
EcoRII CCWGG 3 cut(s) 163, 331, 585
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 174, 1343
EcoT22I ATGCAT 4 cut(s) 61, 274, 576, 1411
ErhI CCWWGG 2 cut(s) 174, 1343
FaqI GGGAC 1 cut(s) 1076
FbaI TGATCA 3 cut(s) 199, 676, 982
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 2 cut(s) 792, 1492
FokI GGATG 5 cut(s) 243, 303, 497, 614, 623
Fsp4HI GCNGC 2 cut(s) 792, 1492
FspBI CTAG 7 cut(s) 105, 696, 1152, 1217, 1244, 1497, 1505
GluI GCNGC 2 cut(s) 792, 1492
GsuI CTGGAG 1 cut(s) 1284
HaeIII GGCC 3 cut(s) 5, 163, 536
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 398
HpaII CCGG 1 cut(s) 6
HphI GGTGA 5 cut(s) 449, 575, 751, 1169, 1184
Hpy166II GTNNAC 4 cut(s) 25, 525, 1160, 1175
Hpy188I TCNGA 2 cut(s) 1137, 1310
Hpy8I GTNNAC 4 cut(s) 25, 525, 1160, 1175
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 5 cut(s) 21, 456, 601, 1100, 1231
HpyCH4III ACNGT 2 cut(s) 143, 1067
HpyCH4IV ACGT 1 cut(s) 1327
HpyF10VI GCNNNNNNNGC 6 cut(s) 120, 383, 658, 916, 1208, 1497
HpyF3I CTNAG 5 cut(s) 552, 1041, 1212, 1313, 1478
HpySE526I ACGT 1 cut(s) 1327
Ksp22I TGATCA 3 cut(s) 199, 676, 982
LmnI GCTCC 1 cut(s) 1220
Lsp1109I GCAGC 1 cut(s) 1478
LweI GCATC 4 cut(s) 68, 259, 583, 928
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 7 cut(s) 105, 696, 1152, 1217, 1244, 1497, 1505
MaeII ACGT 1 cut(s) 1327
MaeIII GTNAC 2 cut(s) 724, 1071
MboII GAAGA 9 cut(s) 520, 568, 791, 881, 893, 953, 1058, 1121, 1124
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 4 cut(s) 718, 892, 1048, 1240
MlsI TGGCCA 2 cut(s) 163, 536
MluNI TGGCCA 2 cut(s) 163, 536
MlyI GAGTC 2 cut(s) 312, 1079
MmeI TCCRAC 4 cut(s) 125, 218, 1172, 1333
MnlI CCTC 8 cut(s) 292, 491, 536, 592, 837, 1240, 1277, 1308
Mox20I TGGCCA 2 cut(s) 163, 536
Mph1103I ATGCAT 4 cut(s) 61, 274, 576, 1411
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 2 cut(s) 163, 536
MseI TTAA 4 cut(s) 339, 381, 1232, 1416
MslI CAYNNNNRTG 2 cut(s) 426, 960
Msp20I TGGCCA 2 cut(s) 163, 536
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 3 cut(s) 165, 333, 587
MunI CAATTG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 3 cut(s) 165, 333, 587
MwoI GCNNNNNNNGC 6 cut(s) 120, 383, 658, 916, 1208, 1497
NcoI CCATGG 1 cut(s) 1343
NlaIV GGNNCC 1 cut(s) 759
NmuCI GTSAC 1 cut(s) 1071
NsiI ATGCAT 4 cut(s) 61, 274, 576, 1411
NspV TTCGAA 1 cut(s) 1436
PagI TCATGA 3 cut(s) 922, 955, 979
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PctI GAATGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 8 cut(s) 36, 81, 709, 742, 1000, 1078, 1088, 1438
Pfl23II CGTACG 1 cut(s) 1324
PkrI GCNGC 2 cut(s) 793, 1493
PleI GAGTC 2 cut(s) 311, 1078
PpsI GAGTC 2 cut(s) 311, 1078
Psp6I CCWGG 3 cut(s) 163, 331, 585
PspGI CCWGG 3 cut(s) 163, 331, 585
PspLI CGTACG 1 cut(s) 1324
PspN4I GGNNCC 1 cut(s) 759
PspPI GGNCC 2 cut(s) 8, 757
PsuI RGATCY 4 cut(s) 718, 892, 1048, 1240
RsaI GTAC 1 cut(s) 1326
RsaNI GTAC 1 cut(s) 1325
RseI CAYNNNNRTG 2 cut(s) 426, 960
SaqAI TTAA 4 cut(s) 339, 381, 1232, 1416
SatI GCNGC 2 cut(s) 792, 1492
Sau96I GGNCC 2 cut(s) 8, 757
SchI GAGTC 2 cut(s) 312, 1079
ScrFI CCNGG 3 cut(s) 165, 333, 587
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 4 cut(s) 68, 259, 583, 928
SfuI TTCGAA 1 cut(s) 1436
SinI GGWCC 2 cut(s) 8, 757
SmiMI CAYNNNNRTG 2 cut(s) 426, 960
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SpeI ACTAGT 2 cut(s) 695, 1504
SsiI CCGC 3 cut(s) 445, 791, 1339
SspI AATATT 1 cut(s) 1261
SspMI CTAG 7 cut(s) 105, 696, 1152, 1217, 1244, 1497, 1505
StyD4I CCNGG 3 cut(s) 163, 331, 585
StyI CCWWGG 2 cut(s) 174, 1343
TaaI ACNGT 2 cut(s) 143, 1067
TaiI ACGT 1 cut(s) 1330
TaqI TCGA 4 cut(s) 403, 412, 1269, 1436
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 8 cut(s) 36, 81, 709, 742, 1000, 1078, 1088, 1438
Tru1I TTAA 4 cut(s) 339, 381, 1232, 1416
Tru9I TTAA 4 cut(s) 339, 381, 1232, 1416
TscAI CASTG 4 cut(s) 148, 400, 480, 1072
TseFI GTSAC 1 cut(s) 1071
TseI GCWGC 1 cut(s) 1491
Tsp45I GTSAC 1 cut(s) 1071
TspDTI ATGAA 6 cut(s) 359, 941, 960, 972, 978, 1026
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 4 cut(s) 148, 400, 480, 1072
VpaK11BI GGWCC 2 cut(s) 8, 757
XapI RAATTY 3 cut(s) 185, 682, 1432
XbaI TCTAGA 1 cut(s) 1243
XmiI GTMKAC 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 7 cut(s) 105, 696, 1152, 1217, 1244, 1497, 1505
Zsp2I ATGCAT 4 cut(s) 61, 274, 576, 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.