MD16G1048300.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012399
Physical Location & Seq
Reverse (-)
3376207 .. 3379744
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1048300.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGCTGGGCCATCGTGGTTGGTTGACAAAAATAGAATCGCAACAAAAATCAAGAGTGCATCTGGAGGATATGATCCTAATGTGATTATATGGCAAAGCAACCCAACTAAAGCTTGTCCAAAATGCCAGCATACGATTGACAATAGTGATGTTGCTCAAGAGTGGCCAGGTTTACCCAAGGGTGTAAAATTTGATCCAACTGATCAAGAGATTATATGGCACTTAATTGCAAAATCTGGTGTAGGTGATCGAAAACCCCATCCTTTTATTGATGAGTTTATTCTAACTGTTGACGACGATGAAGGAATCTGTTGTTCCCATCCTAGGAAACTACCTAGTGTTAAGCTAGATGGAAGTGCTTCCCACTTCTTTCATAGAGCAATTAAGGCTTACAATACTGGAACACGAAAGCGTCGAAAGATACATGATGGTGATGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCAGTGATCTTGGATGGGGTGCAAAGAGGGTGTAAGAAGATTATGGTTCTATACATGAGCACGATCAGAGGAGGAAAACCTGTGAAAACCAATTGGGTTATGCATCAATATCACCTAGGCGTTGAGGAGGATGAGAAGGATGGAGAGTATGTTATATCTAAAATATATTACCAGCAGCAGGAAGCTAAGGAAGCTGATAAAACTGATCAAGATGTTCCTGAAAGTATTGATGCAGTGATCACCAAGGTAGATCCAGTCACTCCCAAGTCGGTTACTCCTGAACCTCCGCGCGCTGAACGAAAGCTTGGTGATTTTGATTCGGCATTGGATACTCCTGCTCCTTCCAGAGATCCCTTTCTTCAGTATCGTGTGGAGGATGGTGCTGAAGATGAGGATGAAGTTAATTTTGAGGTGGACCGTGCTTTAGATGAAATTCATCCAGAGGTGGACTGTGCTGAAGATGATGTTCGTCCTGAATCTGAAAAGCCTGACGATTATGACCAACACAAGGTAGAAAATCAAGCTGATGAAGTAATTAATAACACTGAAAACATTGCTCAGGAAGATCCAAAATGGTGGGACAGTGAGTCACAGAATCTTCTGGATTCGCAACAGCTTGTGGAAGGGTTGTCTCTGTGTGATGATCTTCTTCAGAGCCAATCTCCAACTAGGGGTGGACATGAAAATGGTGAACAAGCGCACATCAAACCCCCCCGTCTTGCTGATTATGCTAAACTAGGACCAGAGGATTTAAAGAAGGATCTAGAGGCTTGTCAAAATCTTGTCCTCGATCCTGCTAATATTTTGGAACTCGATACACCTCCAGATTTCCGACTTAGCCAGCTGGAATTCGGGTCACAGGAAAGTTTCCTTTCTTGGGGTGGCAAGGTGGCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

457

Amino Acids

51.29

Weight (kDa)

4.81

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 59 - 196 3e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012399)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25580
fragaria_vesca FvH4_4g28090 FvH4_4g28090
malus_domestica MD13G1046600.v1.1 MD16G1048300.v1.1
prunus_persica Prupe.1G305300_v2.0.a1 Prupe.1G305300_v2.0.a1
pyrus_communis pycom13g04080 pycom16g04220
rosa_chinensis RchiOBHm_Chr4g0435841
rosa_laevigata RLG00000006555
rosa_multiflora Rmu_sc0002642.1_g000003
rosa_roxburghii Rroxscaffold_5G00377020
rosa_rugosa Rorug04G0289900
rosa_samantha Rh4AG344200 Rh4BG353100 Rh4CG367500 Rh4DG347000
rosa_wichuraiana Rw4G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 760, 762
AciI CCGC 2 cut(s) 445, 758
AclWI GGATC 7 cut(s) 68, 188, 716, 815, 1031, 1239, 1256
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 188, 903, 1319
AcuI CTGAAG 4 cut(s) 815, 876, 948, 1106
AfiI CCNNNNNNNGG 5 cut(s) 324, 649, 979, 1142, 1348
AhdI GACNNNNNGTC 1 cut(s) 1057
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
AluBI AGCT 8 cut(s) 113, 346, 656, 665, 775, 995, 1087, 1315
AluI AGCT 8 cut(s) 113, 346, 656, 665, 775, 995, 1087, 1315
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 1107
AlwI GGATC 7 cut(s) 68, 188, 716, 815, 1031, 1239, 1256
AoxI GGCC 2 cut(s) 8, 164
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 3 cut(s) 188, 903, 1319
AseI ATTAAT 1 cut(s) 1008
Asp700I GAANNNNTTC 1 cut(s) 358
AspA2I CCTAGG 2 cut(s) 323, 586
AspLEI GCGC 3 cut(s) 762, 764, 1171
AspS9I GGNCC 3 cut(s) 8, 886, 1211
AsuHPI GGTGA 7 cut(s) 257, 443, 449, 575, 703, 791, 1172
AvaII GGWCC 2 cut(s) 886, 1211
AvrII CCTAGG 2 cut(s) 323, 586
BalI TGGCCA 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 658
BccI CCATC 9 cut(s) 19, 267, 327, 344, 422, 428, 479, 605, 842
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 3 cut(s) 202, 676, 708
BcoDI GTCTC 1 cut(s) 1107
BfaI CTAG 7 cut(s) 324, 336, 347, 587, 1140, 1208, 1235
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 1 cut(s) 647
BlnI CCTAGG 2 cut(s) 323, 586
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 886, 1211
BmeRI GACNNNNNGTC 1 cut(s) 1057
BmgT120I GGNCC 3 cut(s) 8, 886, 1211
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 3 cut(s) 68, 583, 691
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 2 cut(s) 84, 1278
Bpu10I CCTNAGC 2 cut(s) 657, 1029
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 177, 323, 586, 714
BsaXI ACNNNNNCTCC 4 cut(s) 606, 636, 793, 823
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 649, 979, 1142, 1348
Bse1I ACTGG 4 cut(s) 403, 463, 473, 725
Bse3DI GCAATG 1 cut(s) 1023
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 4 cut(s) 177, 323, 586, 714
BseGI GGATG 8 cut(s) 259, 319, 490, 607, 616, 853, 871, 907
BseLI CCNNNNNNNGG 5 cut(s) 324, 649, 979, 1142, 1348
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 1043
BseNI ACTGG 4 cut(s) 403, 463, 473, 725
BsePI GCGCGC 1 cut(s) 760
BseRI GAGGAG 2 cut(s) 555, 611
BseXI GCAGC 1 cut(s) 658
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 2 cut(s) 760, 762
BshFI GGCC 2 cut(s) 10, 166
BsiHKAI GWGCWC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 1064
BslI CCNNNNNNNGG 5 cut(s) 324, 649, 979, 1142, 1348
BsmAI GTCTC 1 cut(s) 1107
BsmFI GGGAC 1 cut(s) 1064
BsnI GGCC 2 cut(s) 10, 166
Bsp1286I GDGCHC 1 cut(s) 533
BspACI CCGC 2 cut(s) 445, 758
BspANI GGCC 2 cut(s) 10, 166
BspCNI CTCAG 1 cut(s) 1042
BspFNI CGCG 2 cut(s) 760, 762
BspPI GGATC 7 cut(s) 68, 188, 716, 815, 1031, 1239, 1256
BsrDI GCAATG 1 cut(s) 1023
BsrI ACTGG 4 cut(s) 403, 463, 473, 725
BssECI CCNNGG 4 cut(s) 177, 323, 586, 714
BssHII GCGCGC 1 cut(s) 760
BssT1I CCWWGG 4 cut(s) 177, 323, 586, 714
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 4 cut(s) 289, 890, 923, 1055
BstC8I GCNNGC 4 cut(s) 128, 449, 762, 1313
BstDEI CTNAG 3 cut(s) 657, 1029, 1307
BstF5I GGATG 8 cut(s) 259, 319, 490, 607, 616, 853, 871, 907
BstFNI CGCG 2 cut(s) 760, 762
BstHHI GCGC 3 cut(s) 762, 764, 1171
BstMAI GTCTC 1 cut(s) 1107
BstMWI GCNNNNNNNGC 3 cut(s) 386, 662, 1199
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 2 cut(s) 760, 762
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 4 cut(s) 721, 820, 1036, 1231
BstXI CCANNNNNNTGG 1 cut(s) 1047
BstYI RGATCY 4 cut(s) 721, 820, 1036, 1231
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 2 cut(s) 10, 166
BtsCI GGATG 8 cut(s) 259, 319, 490, 607, 616, 853, 871, 907
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 4 cut(s) 480, 711, 1014, 1060
Cac8I GCNNGC 4 cut(s) 128, 449, 762, 1313
CfoI GCGC 3 cut(s) 762, 764, 1171
Cfr13I GGNCC 3 cut(s) 8, 886, 1211
CseI GACGC 1 cut(s) 401
CviAII CATG 3 cut(s) 425, 526, 1151
DdeI CTNAG 3 cut(s) 657, 1029, 1307
DraI TTTAAA 1 cut(s) 1224
DriI GACNNNNNGTC 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 1057
Eco130I CCWWGG 4 cut(s) 177, 323, 586, 714
Eco47I GGWCC 2 cut(s) 886, 1211
Eco57I CTGAAG 4 cut(s) 815, 876, 948, 1106
EcoRI GAATTC 1 cut(s) 1319
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 4 cut(s) 177, 323, 586, 714
EcoT22I ATGCAT 1 cut(s) 576
ErhI CCWWGG 4 cut(s) 177, 323, 586, 714
FaeI CATG 3 cut(s) 428, 529, 1154
FaqI GGGAC 1 cut(s) 1064
FatI CATG 3 cut(s) 424, 525, 1150
FbaI TGATCA 3 cut(s) 202, 676, 708
Fnu4HI GCNGC 1 cut(s) 647
FokI GGATG 8 cut(s) 246, 306, 497, 614, 623, 860, 878, 894
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 7 cut(s) 324, 336, 347, 587, 1140, 1208, 1235
GlaI GCGC 3 cut(s) 761, 763, 1170
GluI GCNGC 1 cut(s) 647
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 84, 1278
HaeIII GGCC 2 cut(s) 10, 166
HgaI GACGC 1 cut(s) 401
HhaI GCGC 3 cut(s) 762, 764, 1171
Hin1II CATG 3 cut(s) 428, 529, 1154
Hin6I GCGC 3 cut(s) 760, 762, 1169
HinP1I GCGC 3 cut(s) 760, 762, 1169
HincII GTYRAC 2 cut(s) 25, 292
HindII GTYRAC 2 cut(s) 25, 292
HindIII AAGCTT 2 cut(s) 111, 773
HinfI GANTC 7 cut(s) 36, 306, 788, 947, 1058, 1066, 1076
HphI GGTGA 7 cut(s) 257, 443, 449, 575, 703, 791, 1172
Hpy166II GTNNAC 7 cut(s) 25, 173, 292, 886, 919, 1148, 1163
Hpy188I TCNGA 4 cut(s) 539, 952, 1125, 1304
Hpy8I GTNNAC 7 cut(s) 25, 173, 292, 886, 919, 1148, 1163
Hpy99I CGWCG 2 cut(s) 299, 417
HpyAV CCTTC 6 cut(s) 296, 456, 601, 822, 1088, 1222
HpyCH4III ACNGT 4 cut(s) 289, 890, 923, 1055
HpyCH4V TGCA 5 cut(s) 59, 230, 493, 574, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 662, 1199
HpyF3I CTNAG 3 cut(s) 657, 1029, 1307
Hsp92II CATG 3 cut(s) 428, 529, 1154
HspAI GCGC 3 cut(s) 760, 762, 1169
Ksp22I TGATCA 3 cut(s) 202, 676, 708
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 68, 583, 691
MaeI CTAG 7 cut(s) 324, 336, 347, 587, 1140, 1208, 1235
MaeIII GTNAC 4 cut(s) 727, 742, 1059, 1326
MboII GAAGA 8 cut(s) 520, 821, 869, 941, 1046, 1061, 1109, 1112
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 4 cut(s) 721, 820, 1036, 1231
MhlI GDGCHC 1 cut(s) 533
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 8 cut(s) 188, 225, 381, 562, 874, 903, 1005, 1319
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 3 cut(s) 221, 1160, 1327
Mox20I TGGCCA 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 358
MscI TGGCCA 1 cut(s) 166
MseI TTAA 6 cut(s) 224, 342, 384, 873, 1008, 1223
MslI CAYNNNNRTG 2 cut(s) 429, 1155
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 2 cut(s) 447, 1315
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 562
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 2 cut(s) 760, 762
MwoI GCNNNNNNNGC 3 cut(s) 386, 662, 1199
NlaIII CATG 3 cut(s) 428, 529, 1154
NmuCI GTSAC 3 cut(s) 727, 1059, 1326
NsiI ATGCAT 1 cut(s) 576
PauI GCGCGC 1 cut(s) 760
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 6 cut(s) 36, 306, 788, 947, 1066, 1076
PkrI GCNGC 1 cut(s) 648
PleI GAGTC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1066
PshBI ATTAAT 1 cut(s) 1008
Psp6I CCWGG 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 3 cut(s) 8, 886, 1211
PsuI RGATCY 4 cut(s) 721, 820, 1036, 1231
PteI GCGCGC 1 cut(s) 760
PvuII CAGCTG 1 cut(s) 1315
RseI CAYNNNNRTG 2 cut(s) 429, 1155
SaqAI TTAA 6 cut(s) 224, 342, 384, 873, 1008, 1223
SatI GCNGC 1 cut(s) 647
Sau96I GGNCC 3 cut(s) 8, 886, 1211
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 3 cut(s) 68, 583, 691
SinI GGWCC 2 cut(s) 886, 1211
SmiMI CAYNNNNRTG 2 cut(s) 429, 1155
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 8 cut(s) 188, 225, 381, 562, 874, 903, 1005, 1319
SsiI CCGC 2 cut(s) 445, 758
SspI AATATT 1 cut(s) 1273
SspMI CTAG 7 cut(s) 324, 336, 347, 587, 1140, 1208, 1235
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 4 cut(s) 177, 323, 586, 714
TaaI ACNGT 4 cut(s) 289, 890, 923, 1055
TaqI TCGA 4 cut(s) 250, 415, 1260, 1284
TasI AATT 8 cut(s) 188, 225, 381, 562, 874, 903, 1005, 1319
TfiI GAWTC 6 cut(s) 36, 306, 788, 947, 1066, 1076
Tru1I TTAA 6 cut(s) 224, 342, 384, 873, 1008, 1223
Tru9I TTAA 6 cut(s) 224, 342, 384, 873, 1008, 1223
TscAI CASTG 4 cut(s) 480, 711, 1021, 1060
TseFI GTSAC 3 cut(s) 727, 1059, 1326
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 3 cut(s) 727, 1059, 1326
TspDTI ATGAA 7 cut(s) 315, 362, 882, 896, 915, 1014, 1167
TspRI CASTG 4 cut(s) 480, 711, 1021, 1060
VpaK11BI GGWCC 2 cut(s) 886, 1211
VspI ATTAAT 1 cut(s) 1008
XapI RAATTY 3 cut(s) 188, 903, 1319
XbaI TCTAGA 1 cut(s) 1234
XmaJI CCTAGG 2 cut(s) 323, 586
XmnI GAANNNNTTC 1 cut(s) 358
XspI CTAG 7 cut(s) 324, 336, 347, 587, 1140, 1208, 1235
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.