AT1G26160

HD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009302
Physical Location & Seq
Reverse (-)
9044422 .. 9047049
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26160.1

Sequence Viewer

Length: 777 bp
ATGGCGGTGATTAGTCCAGCTACACGTTTCGCACCGCCGCTGAACCGGCCTTTTCACCGCCGATCAATACTTGCCTCGTTTCATTCTTCCTCTAGGAACTTCCTCTTCCTCGGAAAACCCACTCCGAGCTCGACGATCGTTTCCGTCCGGTGCCAGAAACCTGTTTCCGACGGGGTTAGCTCTATGGAATCCATGAATCACGTTGCATCTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATATGTACCGTATGGCTCTAATGGCACTTATAGCTGGTGATCTTACTGGAGTTGACAGAGAAAGGTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGCTATTGTTGGAGATATTACCCCATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAATGTGTGAGGTTCTTGGTGGAGGCCTCAGAGCGGAGGAGATCACAGAACTTTGGCTGGAGTATGAGAACAATGCTTCTTTAGAAGCAAATATTGTAAAAGACTTTGATAAGGTTGAGATGATTCTCCAGGCGCTAGAATATGAAGCTGAACACGGGAAAGTGCTCGACGAGTTTTTCATATCAACAGCAGGCAAGTTTCAAACAGAAATTGGAAAAAGCTGGGCTGCTGAGATCAACGCTAGGAGAAAAAGCCAATTGACAAACAGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD_3

Protein Analysis

258

Amino Acids

28.69

Weight (kDa)

7.06

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YfbR-like PF12917 78 - 216 1e-07 5'-deoxynucleotidase YfbR-like
HD_3 PF13023 83 - 236 9.2e-49 HD domain
HD PF01966 105 - 207 1.5e-10 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 533
AciI CCGC 5 cut(s) 5, 35, 38, 58, 533
AclI AACGTT 1 cut(s) 239
AcuI CTGAAG 2 cut(s) 195, 438
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 449, 532
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 1 cut(s) 701
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 8 cut(s) 20, 129, 180, 353, 422, 491, 647, 720
AluI AGCT 8 cut(s) 20, 129, 180, 353, 422, 491, 647, 720
Alw21I GWGCWC 2 cut(s) 131, 666
Alw26I GTCTC 2 cut(s) 257, 476
AoxI GGCC 2 cut(s) 47, 523
ApeKI GCWGC 2 cut(s) 488, 725
AseI ATTAAT 1 cut(s) 282
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 19, 47, 368
AvaII GGWCC 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 459
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 131, 666
BbvI GCAGC 2 cut(s) 500, 712
BccI CCATC 2 cut(s) 443, 451
BciT130I CCWGG 1 cut(s) 629
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 257, 476
BfaI CTAG 3 cut(s) 93, 635, 741
BfoI RGCGCY 1 cut(s) 635
BisI GCNGC 3 cut(s) 38, 489, 726
BlsI GCNGC 3 cut(s) 39, 490, 727
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 629
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 3 cut(s) 387, 578, 611
BpuEI CTTGAG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 532
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 370
Bse21I CCTNAGG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 629
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 449, 532
BseMII CTCAG 2 cut(s) 541, 720
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 500, 712
BseYI CCCAGC 1 cut(s) 720
Bsh1285I CGRYCG 2 cut(s) 138, 228
BshFI GGCC 2 cut(s) 49, 525
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 2 cut(s) 138, 228
BsiHKAI GWGCWC 2 cut(s) 131, 666
BsiSI CCGG 2 cut(s) 46, 148
BslI CCNNNNNNNGG 2 cut(s) 449, 532
BsmAI GTCTC 2 cut(s) 257, 476
BsmBI CGTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 49, 525
Bsp1286I GDGCHC 2 cut(s) 131, 666
Bsp143I GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
BspACI CCGC 5 cut(s) 5, 35, 38, 58, 533
BspANI GGCC 2 cut(s) 49, 525
BspCNI CTCAG 2 cut(s) 540, 721
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 3 cut(s) 459, 527, 729
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 7 cut(s) 65, 138, 228, 319, 361, 543, 735
BstMAI GTCTC 2 cut(s) 257, 476
BstMBI GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
BstMCI CGRYCG 2 cut(s) 138, 228
BstMWI GCNNNNNNNGC 3 cut(s) 46, 341, 350
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 500, 712
BstV2I GAAGAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 2 cut(s) 49, 525
BsuTUI ATCGAT 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 691
CfoI GCGC 1 cut(s) 634
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 193, 407
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 459, 527, 729
DpnI GATC 7 cut(s) 64, 137, 227, 318, 360, 542, 734
DpnII GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
DraI TTTAAA 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 195, 438
Eco81I CCTNAGG 1 cut(s) 459
EcoICRI GAGCTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 627
EcoRV GATATC 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 2 cut(s) 196, 410
FatI CATG 2 cut(s) 192, 406
FauNDI CATATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 38, 489, 726
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 38, 489, 726
FspBI CTAG 3 cut(s) 93, 635, 741
GlaI GCGC 1 cut(s) 633
GluI GCNGC 3 cut(s) 38, 489, 726
GsaI CCCAGC 1 cut(s) 724
GsuI CTGGAG 3 cut(s) 387, 578, 611
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 2 cut(s) 49, 525
HapII CCGG 2 cut(s) 46, 148
HhaI GCGC 1 cut(s) 634
Hin1II CATG 2 cut(s) 196, 410
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 4 cut(s) 188, 196, 305, 622
HpaII CCGG 2 cut(s) 46, 148
HphI GGTGA 3 cut(s) 19, 47, 368
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 5 cut(s) 113, 126, 169, 448, 530
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 3 cut(s) 136, 173, 671
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 3 cut(s) 25, 201, 239
HpyCH4V TGCA 2 cut(s) 206, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 341, 350
HpyF3I CTNAG 3 cut(s) 459, 527, 729
HpySE526I ACGT 3 cut(s) 25, 201, 239
Hsp92II CATG 2 cut(s) 196, 410
HspAI GCGC 1 cut(s) 632
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
Lsp1109I GCAGC 2 cut(s) 500, 712
LweI GCATC 1 cut(s) 215
MaeI CTAG 3 cut(s) 93, 635, 741
MaeII ACGT 3 cut(s) 25, 201, 239
MalI GATC 7 cut(s) 64, 137, 227, 318, 360, 542, 734
MbiI CCGCTC 1 cut(s) 533
MboI GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
MboII GAAGA 5 cut(s) 78, 97, 201, 213, 476
MfeI CAATTG 3 cut(s) 309, 399, 755
MhlI GDGCHC 2 cut(s) 131, 666
MluCI AATT 4 cut(s) 309, 399, 708, 755
MmeI TCCRAC 2 cut(s) 192, 409
MnlI CCTC 9 cut(s) 85, 100, 113, 119, 471, 502, 515, 529, 536
MseI TTAA 2 cut(s) 282, 494
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 46, 148
MspR9I CCNGG 1 cut(s) 629
MunI CAATTG 3 cut(s) 309, 399, 755
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 46, 341, 350
NdeI CATATG 1 cut(s) 321
NdeII GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
NlaIII CATG 2 cut(s) 196, 410
NlaIV GGNNCC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 525
PfeI GAWTC 4 cut(s) 188, 196, 305, 622
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 3 cut(s) 39, 490, 727
Ple19I CGATCG 2 cut(s) 138, 228
PshBI ATTAAT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 627
PspFI CCCAGC 1 cut(s) 720
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 299
PvuI CGATCG 2 cut(s) 138, 228
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 282, 494
SatI GCNGC 3 cut(s) 38, 489, 726
Sau3AI GATC 7 cut(s) 62, 135, 225, 316, 358, 540, 732
Sau96I GGNCC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 2 cut(s) 131, 666
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 309, 399, 708, 755
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 5 cut(s) 5, 35, 38, 58, 533
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 93, 635, 741
SstI GAGCTC 1 cut(s) 131
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 627
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 3 cut(s) 28, 204, 242
TaqI TCGA 4 cut(s) 131, 224, 228, 666
TasI AATT 4 cut(s) 309, 399, 708, 755
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 4 cut(s) 188, 196, 305, 622
Tru1I TTAA 2 cut(s) 282, 494
Tru9I TTAA 2 cut(s) 282, 494
TseI GCWGC 2 cut(s) 488, 725
TspDTI ATGAA 4 cut(s) 71, 209, 657, 667
TspGWI ACGGA 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 1 cut(s) 282
XspI CTAG 3 cut(s) 93, 635, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.