Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009302

Physical Location & Seq

Genomic Coordinates Reverse (-)

58192746 .. 58195627

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCACAGACTCCGACGAACTTCCTCGCGCGAAGAGCAAGTCAGCCAACAACTTCTCCAAACTAAAAAGACGAACCCAAAAAAAAAGAAAGAAACTTCTTCCTCTTCTCTGCAAATTATGGCGGTTAATTCACCGACTAGTCGCTGCGCCGCTCAGCTCAGCCGCTCCCTCGCTCCTAGCTCACCTCTCCCTTTCTCCAACCGGACCTTCACCCGACCCGGATTCCGCCCCGACCCGCCGACCCCCAGGCTCGTCTCCGTCCGTTGCCAGACGCCGTCTCCGGACGCCTTCCGATCCAAGCGGCCGGTCGGTCTCGGCGAGCCCGAAGCTCCGATCGGGTCCTCGGGTTCTTCGTCCACCTCCTCCGCCATTGATTTTCTCACATTGTGCCACTCTCTCAAGACTACGAAAAGGAAAGGGTGGGTGAATCATGGAATAAAGGGCGAGTCGATTGCTGACCACATGTACCGCATGGCTTTGATGTCTTTGATTGCTGGTGATATTCCTGGTTTGAATAGAGAAAGGTGTATTAAGATTGCAATTGTGCATGACATTGCAGAAGCTATCGTTGGAGATATAACACCATCGGATGGTGTGCCTAAAAAGGAAAAGAGCAGAATGGAGGAAGCAGCTTTGAATGAAATGTGTGTGGTTCTTGGTGGAGGGATGAGAGCTGAAGAGATCAAAGAACTTTGGGCAGAGTACGAAAACAATTCTTCTATAGAGGCTAATCTTGTGAAGGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAGTATGAAATGGAACACGGAAAAGTGCTGGATGAGTTTTTCATTTCTACAGCAGGAAAATTTCAGACTGATCTAGGAAAGAGTTGGGCAGCTGAGATCATTTCTAGAAGAAATACACGGCTGGGAAAAAGCCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD_3

Protein Analysis

305

Amino Acids

33.73

Weight (kDa)

9.25

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YfbR-like	PF12917	126 - 266	4.1e-06	5'-deoxynucleotidase YfbR-like
HD_3	PF13023	131 - 282	7e-45	HD domain
HD	PF01966	152 - 254	1.4e-09	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26160 AT1G26160
fragaria_vesca	FvH4_1g00280 FvH4_4g28490 FvH4_4g28490
malus_domestica	MD16G1051400.v1.1
prunus_persica	Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1
pyrus_communis	pycom16g04520
rosa_chinensis	RchiOBHm_Chr4g0436461
rosa_laevigata	RLG00000006517
rosa_multiflora	Rmu_sc0000579.1_g000006
rosa_roxburghii	Rroxscaffold_5G00377600
rosa_rugosa	Rorug04G0294000 Rorug04G0294100 Rorug04G0294200
rosa_samantha	Rh4AG348500 Rh4BG357200 Rh4CG371700 Rh4DG350900
rosa_wichuraiana	Rw4G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccBSI	CCGCTC	2 cut(s)	152, 165
AccII	CGCG	2 cut(s)	28, 30
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	8 cut(s)	122, 150, 163, 226, 236, 301, 366, 469
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	696
AcyI	GRCGYC	2 cut(s)	272, 285
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	467, 704
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	514, 637, 758
AhlI	ACTAGT	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	245, 505
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 552, 584
AluBI	AGCT	7 cut(s)	157, 180, 329, 563, 632, 674, 869
AluI	AGCT	7 cut(s)	157, 180, 329, 563, 632, 674, 869
Alw26I	GTCTC	3 cut(s)	259, 282, 317
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	144, 629, 866
ApoI	RAATTY	1 cut(s)	836
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
Asp700I	GAANNNNTTC	1 cut(s)	762
AspLEI	GCGC	2 cut(s)	30, 149
AspS9I	GGNCC	2 cut(s)	204, 339
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	5 cut(s)	123, 174, 202, 436, 509
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	204, 339
BanII	GRGCYC	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	131, 641, 878
BccI	CCATC	2 cut(s)	584, 592
BceAI	ACGGC	2 cut(s)	259, 911
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	2 cut(s)	247, 507
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	259, 282, 317
BcuI	ACTAGT	1 cut(s)	137
BfaI	CTAG	4 cut(s)	138, 177, 851, 882
BfmI	CTRYAG	2 cut(s)	720, 825
BisI	GCNGC	6 cut(s)	145, 150, 163, 302, 630, 867
BlpI	GCTNAGC	2 cut(s)	153, 158
BlsI	GCNGC	6 cut(s)	146, 151, 164, 303, 631, 868
Bme1390I	CCNGG	3 cut(s)	219, 247, 507
Bme18I	GGWCC	2 cut(s)	204, 339
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	204, 339
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	3 cut(s)	219, 247, 507
Bpu1102I	GCTNAGC	2 cut(s)	153, 158
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	272, 285
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	245, 342
BsaWI	WCCGGW	2 cut(s)	201, 280
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse118I	RCCGGY	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	247, 507
BseDI	CCNNGG	2 cut(s)	245, 342
BseGI	GGATG	3 cut(s)	595, 672, 814
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	3 cut(s)	167, 172, 861
BseRI	GAGGAG	1 cut(s)	352
BseX3I	CGGCCG	1 cut(s)	302
BseXI	GCAGC	3 cut(s)	131, 641, 878
BseYI	CCCAGC	1 cut(s)	898
Bsh1236I	CGCG	2 cut(s)	28, 30
Bsh1285I	CGRYCG	3 cut(s)	305, 309, 336
BshFI	GGCC	1 cut(s)	304
BsiEI	CGRYCG	3 cut(s)	305, 309, 336
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	4 cut(s)	202, 219, 281, 305
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	259, 282, 317
BsmBI	CGTCTC	2 cut(s)	259, 282
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp13I	TCCGGA	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	293, 333, 681, 847, 873
Bsp1720I	GCTNAGC	2 cut(s)	153, 158
BspACI	CCGC	8 cut(s)	122, 150, 163, 226, 236, 301, 366, 469
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	3 cut(s)	166, 171, 862
BspEI	TCCGGA	1 cut(s)	280
BspFNI	CGCG	2 cut(s)	28, 30
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	2 cut(s)	152, 165
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	245, 342
BssMI	GATC	5 cut(s)	293, 333, 681, 847, 873
BssNI	GRCGYC	2 cut(s)	272, 285
Bst2UI	CCWGG	2 cut(s)	247, 507
Bst6I	CTCTTC	3 cut(s)	27, 109, 672
BstACI	GRCGYC	2 cut(s)	272, 285
BstC8I	GCNNGC	2 cut(s)	320, 771
BstDEI	CTNAG	3 cut(s)	153, 158, 870
BstF5I	GGATG	3 cut(s)	595, 672, 814
BstFNI	CGCG	2 cut(s)	28, 30
BstHHI	GCGC	2 cut(s)	30, 149
BstKTI	GATC	5 cut(s)	296, 336, 684, 850, 876
BstMAI	GTCTC	3 cut(s)	259, 282, 317
BstMBI	GATC	5 cut(s)	293, 333, 681, 847, 873
BstMCI	CGRYCG	3 cut(s)	305, 309, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	247, 507
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	3 cut(s)	217, 245, 505
BstSFI	CTRYAG	2 cut(s)	720, 825
BstUI	CGCG	2 cut(s)	28, 30
BstV1I	GCAGC	3 cut(s)	131, 641, 878
BstZI	CGGCCG	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	3 cut(s)	595, 672, 814
Cac8I	GCNNGC	2 cut(s)	320, 771
CfoI	GCGC	2 cut(s)	30, 149
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	204, 339
CseI	GACGC	2 cut(s)	280, 293
Csp6I	GTAC	2 cut(s)	466, 703
CviAII	CATG	4 cut(s)	431, 463, 472, 548
CviQI	GTAC	2 cut(s)	466, 703
DdeI	CTNAG	3 cut(s)	153, 158, 870
DpnI	GATC	5 cut(s)	295, 335, 683, 849, 875
DpnII	GATC	5 cut(s)	293, 333, 681, 847, 873
DraIII	CACNNNGTG	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	302
EagI	CGGCCG	1 cut(s)	302
Eam1104I	CTCTTC	3 cut(s)	27, 109, 672
EarI	CTCTTC	3 cut(s)	27, 109, 672
EciI	GGCGGA	2 cut(s)	215, 355
EclXI	CGGCCG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	204, 339
Eco52I	CGGCCG	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	245, 505
EcoT38I	GRGCYC	1 cut(s)	324
Esp3I	CGTCTC	2 cut(s)	259, 282
FaeI	CATG	4 cut(s)	434, 466, 475, 551
FaiI	YATR	8 cut(s)	119, 432, 464, 473, 549, 578, 722, 783
FatI	CATG	4 cut(s)	430, 462, 471, 547
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	6 cut(s)	145, 150, 163, 302, 630, 867
FokI	GGATG	3 cut(s)	602, 679, 821
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	6 cut(s)	145, 150, 163, 302, 630, 867
FspBI	CTAG	4 cut(s)	138, 177, 851, 882
GlaI	GCGC	2 cut(s)	29, 148
GluI	GCNGC	6 cut(s)	145, 150, 163, 302, 630, 867
GsaI	CCCAGC	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	4 cut(s)	202, 219, 281, 305
HgaI	GACGC	2 cut(s)	280, 293
HhaI	GCGC	2 cut(s)	30, 149
Hin1I	GRCGYC	2 cut(s)	272, 285
Hin1II	CATG	4 cut(s)	434, 466, 475, 551
Hin6I	GCGC	2 cut(s)	28, 147
HinP1I	GCGC	2 cut(s)	28, 147
HinfI	GANTC	5 cut(s)	9, 222, 427, 446, 763
HpaII	CCGG	4 cut(s)	202, 219, 281, 305
HphI	GGTGA	5 cut(s)	123, 174, 202, 436, 509
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	5 cut(s)	14, 293, 333, 589, 843
Hpy188III	TCNNGA	3 cut(s)	281, 400, 882
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	217, 298, 733
HpyCH4V	TGCA	6 cut(s)	4, 112, 539, 547, 557, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	153, 158, 870
Hsp92I	GRCGYC	2 cut(s)	272, 285
Hsp92II	CATG	4 cut(s)	434, 466, 475, 551
HspAI	GCGC	2 cut(s)	28, 147
Kpn2I	TCCGGA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	293, 333, 681, 847, 873
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	3 cut(s)	170, 178, 334
Lsp1109I	GCAGC	3 cut(s)	131, 641, 878
MaeI	CTAG	4 cut(s)	138, 177, 851, 882
MalI	GATC	5 cut(s)	295, 335, 683, 849, 875
MbiI	CCGCTC	2 cut(s)	152, 165
MboI	GATC	5 cut(s)	293, 333, 681, 847, 873
MboII	GAAGA	7 cut(s)	44, 90, 96, 342, 689, 708, 897
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	5 cut(s)	114, 127, 540, 712, 836
MlyI	GAGTC	2 cut(s)	3, 455
MmeI	TCCRAC	3 cut(s)	37, 222, 550
MroI	TCCGGA	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	762
MseI	TTAA	2 cut(s)	126, 531
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	4 cut(s)	202, 219, 281, 305
MspR9I	CCNGG	3 cut(s)	219, 247, 507
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	2 cut(s)	247, 507
MvnI	CGCG	2 cut(s)	28, 30
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	5 cut(s)	293, 333, 681, 847, 873
NlaIII	CATG	4 cut(s)	434, 466, 475, 551
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	1 cut(s)	294
NspI	RCATGY	1 cut(s)	466
PciI	ACATGT	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 321, 350
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	3 cut(s)	222, 427, 763
PflFI	GACNNNGTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	6 cut(s)	146, 151, 164, 303, 631, 868
Ple19I	CGATCG	1 cut(s)	336
PleI	GAGTC	2 cut(s)	3, 454
PpsI	GAGTC	2 cut(s)	3, 454
PpuMI	RGGWCCY	1 cut(s)	339
PscI	ACATGT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	245, 505
PspFI	CCCAGC	1 cut(s)	898
PspGI	CCWGG	2 cut(s)	245, 505
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	204, 339
PspPPI	RGGWCCY	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	2 cut(s)	467, 704
RsaNI	GTAC	2 cut(s)	466, 703
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	126, 531
SatI	GCNGC	6 cut(s)	145, 150, 163, 302, 630, 867
Sau3AI	GATC	5 cut(s)	293, 333, 681, 847, 873
Sau96I	GGNCC	2 cut(s)	204, 339
SchI	GAGTC	2 cut(s)	3, 455
ScrFI	CCNGG	3 cut(s)	219, 247, 507
SduI	GDGCHC	1 cut(s)	324
SfcI	CTRYAG	2 cut(s)	720, 825
SinI	GGWCC	2 cut(s)	204, 339
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	137
Sse9I	AATT	5 cut(s)	114, 127, 540, 712, 836
SsiI	CCGC	8 cut(s)	122, 150, 163, 226, 236, 301, 366, 469
SspMI	CTAG	4 cut(s)	138, 177, 851, 882
StyD4I	CCNGG	3 cut(s)	217, 245, 505
TaqI	TCGA	1 cut(s)	449
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	5 cut(s)	114, 127, 540, 712, 836
TauI	GCSGC	3 cut(s)	152, 165, 304
TfiI	GAWTC	3 cut(s)	222, 427, 763
Tru1I	TTAA	2 cut(s)	126, 531
Tru9I	TTAA	2 cut(s)	126, 531
TseI	GCWGC	3 cut(s)	144, 629, 866
TspDTI	ATGAA	3 cut(s)	654, 798, 808
TspGWI	ACGGA	3 cut(s)	247, 251, 810
Tth111I	GACNNNGTC	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	204, 339
XapI	RAATTY	1 cut(s)	836
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	4 cut(s)	138, 177, 851, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.