FvH4_1g00280

HD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009302
Physical Location & Seq
Forward (+)
140734 .. 141285
552 bp
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UTR
Exon/CDS
Intron
FvH4_1g00280.t1

Sequence Viewer

Length: 354 bp
ATGTATGCCTATGGTGCATTTCTATCTGTCTACATGCGTAACTATATCTATATTTTGTGGGGTATTGATTCTTGGTTGGTGTTTGGACTGTTCTTAGCTGTCGTTGGTAATATAACACCATCTGATAATGTGCCCAAAAAGGAAAAGAGTAGAATGGAAGCAGCAGCTTTGAATGAAATGTGCGTAGTTCTCGGTGGAGGGATGAGAGCTGAAGAGATCAAAGAACTTTGGGAAGAATATGAAAATAATTCCTCCGTCGAGGCAAATCTTGTGAAGGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAGTATGAAATGGGTATGTGTTTCATACTTTCATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD_3

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

4.42

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD_3 PF13023 33 - 107 1.4e-17 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 172, 293
AluBI AGCT 3 cut(s) 98, 167, 209
AluI AGCT 3 cut(s) 98, 167, 209
ApeKI GCWGC 2 cut(s) 161, 164
Asp700I GAANNNNTTC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 173, 176
BccI CCATC 1 cut(s) 127
BisI GCNGC 2 cut(s) 162, 165
BlsI GCNGC 2 cut(s) 163, 166
BseGI GGATG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 173, 176
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 216
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 173, 176
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 306
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 98, 167, 209
CviKI_1 RGCY 3 cut(s) 98, 167, 209
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 231
FaeI CATG 1 cut(s) 37
FatI CATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 162, 165
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 2 cut(s) 162, 165
GluI GCNGC 2 cut(s) 162, 165
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 68, 298
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 17, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 94
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 216
Lsp1109I GCAGC 2 cut(s) 173, 176
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 2 cut(s) 224, 245
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 247
MnlI CCTC 3 cut(s) 191, 253, 262
MroXI GAANNNNTTC 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 37
NspI RCATGY 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 68, 298
PkrI GCNGC 2 cut(s) 163, 166
SatI GCNGC 2 cut(s) 162, 165
Sau3AI GATC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 135
SetI ASST 3 cut(s) 100, 169, 211
SgeI CNNG 6 cut(s) 46, 84, 203, 271, 281, 317
Sse9I AATT 1 cut(s) 247
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 247
TfiI GAWTC 2 cut(s) 68, 298
TseI GCWGC 2 cut(s) 161, 164
TspDTI ATGAA 5 cut(s) 189, 255, 325, 333, 333
TspGWI ACGGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.