Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000579.1

Orthogroup ID

OG0009302

Physical Location & Seq

Genomic Coordinates Reverse (-)

36031 .. 39115

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000579.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgttggtagcatcgtttgcagaagttatccgaactcccatgaccgttgtcatcagggggagatgcagacatcagtcatcagggggagatgcagacatcagtcatcagggggagatgtctacatgtatggtctccaaacatgaaggtatgtggcaacgagaggagcaccacgtttgggtgacacaagggggagtaggagcggtaggtcttgctttggcagccaacacgtttagccaaaacgacgcgttttggcgacgcggcggactttctctctccgaagacgtctgcttttctctctccccgatcctccagtcttcttcgtcgacggcgttctcaccggagatagcgacggcgacgacgagagcctccaaatccagatgctccctcgctcctcgctcacctctccctttctccaaccggaccttcacccgacccggattccgccccgacccggcgacccccaggctcgtctccgtccgtagccagacgccgtctccggacgctttccgatccaagcggccggtcgggctcggcgagcccgaagctccgatcgggtcctcgggttcttcgtccacctcctcggccattgattttctcacgttgtgccactctctcaagactacgaaaaggaaagggtgggtgaatcatggaataaagggcgagtcgattgctgaccacatgtaccgcatggctttgatgtctttgattgctggtgatattcctggtttgaatagagaaaggtgtattaagattgcaattgtgcatgacattgcagaagctatcgttggagatataacaccatctgatggtgtgcctaaaaaggaaaagagcagaatggaggaagcagctttgaatgaaatgtgtgtggttcttggtggagggatgagagctgaagagatcaaagaactttgggcagagtatgaaaacaattcttctatagaggctaatcttgtgaaggattttgacaaagttgaaatgattctgcaagcattggagtatgaaatggaacacggaaaagtgctggatgagtttttcatttctacagcaggaaaatttcagactgatctaggaaagagttgggcagctgagataatttctagaagaaatacacggctgggaaaaagccagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD_3

Protein Analysis

377

Amino Acids

41.17

Weight (kDa)

7.15

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26160 AT1G26160
fragaria_vesca	FvH4_1g00280 FvH4_4g28490 FvH4_4g28490
malus_domestica	MD16G1051400.v1.1
prunus_persica	Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1
pyrus_communis	pycom16g04520
rosa_chinensis	RchiOBHm_Chr4g0436461
rosa_laevigata	RLG00000006517
rosa_multiflora	Rmu_sc0000579.1_g000006
rosa_roxburghii	Rroxscaffold_5G00377600
rosa_rugosa	Rorug04G0294000 Rorug04G0294100 Rorug04G0294200
rosa_samantha	Rh4AG348500 Rh4BG357200 Rh4CG371700 Rh4DG350900
rosa_wichuraiana	Rw4G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccBSI	CCGCTC	1 cut(s)	200
AccI	GTMKAC	2 cut(s)	119, 323
AccII	CGCG	2 cut(s)	245, 258
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	6 cut(s)	200, 258, 261, 442, 517, 685
AclWI	GGATC	2 cut(s)	298, 504
AcoI	YGGCCR	2 cut(s)	518, 582
AcsI	RAATTY	1 cut(s)	1052
AcuI	CTGAAG	1 cut(s)	912
AcyI	GRCGYC	2 cut(s)	282, 488
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	3 cut(s)	175, 451, 806
AflIII	ACRYGT	4 cut(s)	122, 225, 243, 678
AgsI	TTSAA	3 cut(s)	730, 853, 974
AjnI	CCWGG	2 cut(s)	461, 721
AjuI	GAANNNNNNNTTGG	4 cut(s)	407, 439, 768, 800
AluBI	AGCT	5 cut(s)	545, 779, 848, 890, 1085
AluI	AGCT	5 cut(s)	545, 779, 848, 890, 1085
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	3 cut(s)	136, 475, 498
AlwI	GGATC	2 cut(s)	298, 504
Ama87I	CYCGRG	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	2 cut(s)	518, 582
ApeKI	GCWGC	3 cut(s)	218, 845, 1082
ApoI	RAATTY	1 cut(s)	1052
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	2 cut(s)	420, 555
AsuC2I	CCSGG	2 cut(s)	435, 452
AsuHPI	GGTGA	6 cut(s)	190, 327, 390, 418, 652, 725
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	2 cut(s)	420, 555
BanII	GRGCYC	2 cut(s)	531, 540
BbsI	GAAGAC	2 cut(s)	285, 306
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	230, 857, 1094
BccI	CCATC	2 cut(s)	800, 808
BceAI	ACGGC	4 cut(s)	342, 366, 475, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	463, 723
BcnI	CCSGG	2 cut(s)	435, 452
BcoDI	GTCTC	3 cut(s)	136, 475, 498
BfaI	CTAG	2 cut(s)	1067, 1098
BfmI	CTRYAG	2 cut(s)	936, 1041
BglI	GCCNNNNNGGC	1 cut(s)	526
BisI	GCNGC	5 cut(s)	219, 259, 518, 846, 1083
BlsI	GCNGC	5 cut(s)	220, 260, 519, 847, 1084
Bme1390I	CCNGG	4 cut(s)	435, 452, 463, 723
Bme18I	GGWCC	2 cut(s)	420, 555
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	420, 555
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	4 cut(s)	435, 452, 463, 723
BmsI	GCATC	4 cut(s)	20, 53, 79, 368
BoxI	GACNNNNGTC	3 cut(s)	47, 73, 99
BpiI	GAAGAC	2 cut(s)	285, 306
BpmI	CTGGAG	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	435, 452
BsaHI	GRCGYC	2 cut(s)	282, 488
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	461, 558, 579
BsaWI	WCCGGW	3 cut(s)	337, 417, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 451, 806
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	2 cut(s)	463, 723
BseDI	CCNNGG	3 cut(s)	461, 558, 579
BseGI	GGATG	2 cut(s)	888, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	175, 451, 806
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	3 cut(s)	176, 381, 568
BseX3I	CGGCCG	1 cut(s)	518
BseXI	GCAGC	3 cut(s)	230, 857, 1094
BseYI	CCCAGC	1 cut(s)	1114
Bsh1236I	CGCG	2 cut(s)	245, 258
Bsh1285I	CGRYCG	3 cut(s)	521, 525, 552
BshFI	GGCC	2 cut(s)	520, 584
BsiEI	CGRYCG	3 cut(s)	521, 525, 552
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	6 cut(s)	338, 418, 435, 452, 497, 521
BslI	CCNNNNNNNGG	3 cut(s)	175, 451, 806
BsmAI	GTCTC	3 cut(s)	136, 475, 498
BsmBI	CGTCTC	2 cut(s)	475, 498
BsnI	GGCC	2 cut(s)	520, 584
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	168, 531, 540
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	5 cut(s)	303, 509, 549, 897, 1063
BspACI	CCGC	6 cut(s)	200, 258, 261, 442, 517, 685
BspANI	GGCC	2 cut(s)	520, 584
BspCNI	CTCAG	1 cut(s)	1078
BspEI	TCCGGA	1 cut(s)	496
BspFNI	CGCG	2 cut(s)	245, 258
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	2 cut(s)	298, 504
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	768
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	3 cut(s)	461, 558, 579
BssMI	GATC	5 cut(s)	303, 509, 549, 897, 1063
BssNI	GRCGYC	2 cut(s)	282, 488
Bst2UI	CCWGG	2 cut(s)	463, 723
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	2 cut(s)	282, 488
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	536, 987
BstDEI	CTNAG	1 cut(s)	1086
BstF5I	GGATG	2 cut(s)	888, 1030
BstFNI	CGCG	2 cut(s)	245, 258
BstKTI	GATC	5 cut(s)	306, 512, 552, 900, 1066
BstMAI	GTCTC	3 cut(s)	136, 475, 498
BstMBI	GATC	5 cut(s)	303, 509, 549, 897, 1063
BstMCI	CGRYCG	3 cut(s)	521, 525, 552
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 218, 526, 535
BstNI	CCWGG	2 cut(s)	463, 723
BstNSI	RCATGY	2 cut(s)	126, 682
BstPAI	GACNNNNGTC	3 cut(s)	47, 73, 99
BstSCI	CCNGG	4 cut(s)	433, 450, 461, 721
BstSFI	CTRYAG	2 cut(s)	936, 1041
BstUI	CGCG	2 cut(s)	245, 258
BstV1I	GCAGC	3 cut(s)	230, 857, 1094
BstV2I	GAAGAC	2 cut(s)	285, 306
BstZI	CGGCCG	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	520, 584
BtsCI	GGATG	2 cut(s)	888, 1030
Cac8I	GCNNGC	2 cut(s)	536, 987
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	420, 555
CseI	GACGC	4 cut(s)	251, 264, 496, 509
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	7 cut(s)	40, 123, 140, 647, 679, 688, 764
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	1 cut(s)	1086
DpnI	GATC	5 cut(s)	305, 511, 551, 899, 1065
DpnII	GATC	5 cut(s)	303, 509, 549, 897, 1063
DraIII	CACNNNGTG	1 cut(s)	603
EaeI	YGGCCR	2 cut(s)	518, 582
EagI	CGGCCG	1 cut(s)	518
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
EciI	GGCGGA	2 cut(s)	276, 431
EclXI	CGGCCG	1 cut(s)	518
Eco24I	GRGCYC	2 cut(s)	531, 540
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	420, 555
Eco52I	CGGCCG	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	912
Eco88I	CYCGRG	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	461, 721
EcoT38I	GRGCYC	2 cut(s)	531, 540
Esp3I	CGTCTC	2 cut(s)	475, 498
FaeI	CATG	7 cut(s)	43, 126, 143, 650, 682, 691, 767
FatI	CATG	7 cut(s)	39, 122, 139, 646, 678, 687, 763
FblI	GTMKAC	2 cut(s)	119, 323
Fnu4HI	GCNGC	5 cut(s)	219, 259, 518, 846, 1083
FokI	GGATG	2 cut(s)	895, 1037
FriOI	GRGCYC	2 cut(s)	531, 540
Fsp4HI	GCNGC	5 cut(s)	219, 259, 518, 846, 1083
FspBI	CTAG	2 cut(s)	1067, 1098
GluI	GCNGC	5 cut(s)	219, 259, 518, 846, 1083
GsaI	CCCAGC	1 cut(s)	1118
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	520, 584
HapII	CCGG	6 cut(s)	338, 418, 435, 452, 497, 521
HgaI	GACGC	4 cut(s)	251, 264, 496, 509
Hin1I	GRCGYC	2 cut(s)	282, 488
Hin1II	CATG	7 cut(s)	43, 126, 143, 650, 682, 691, 767
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	4 cut(s)	438, 643, 662, 979
HpaII	CCGG	6 cut(s)	338, 418, 435, 452, 497, 521
HphI	GGTGA	6 cut(s)	190, 327, 390, 418, 652, 725
Hpy166II	GTNNAC	3 cut(s)	120, 324, 573
Hpy188I	TCNGA	6 cut(s)	32, 277, 509, 549, 805, 1059
Hpy188III	TCNNGA	4 cut(s)	375, 497, 616, 1098
Hpy8I	GTNNAC	3 cut(s)	120, 324, 573
Hpy99I	CGWCG	7 cut(s)	245, 258, 325, 328, 352, 358, 361
HpyAV	CCTTC	3 cut(s)	137, 433, 949
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	4 cut(s)	171, 227, 282, 599
HpyCH4V	TGCA	7 cut(s)	20, 66, 92, 755, 763, 773, 985
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 218, 526, 535
HpyF3I	CTNAG	1 cut(s)	1086
HpySE526I	ACGT	4 cut(s)	171, 227, 282, 599
Hsp92I	GRCGYC	2 cut(s)	282, 488
Hsp92II	CATG	7 cut(s)	43, 126, 143, 650, 682, 691, 767
Kpn2I	TCCGGA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	303, 509, 549, 897, 1063
LmnI	GCTCC	5 cut(s)	163, 197, 386, 394, 550
Lsp1109I	GCAGC	3 cut(s)	230, 857, 1094
LweI	GCATC	4 cut(s)	20, 53, 79, 368
MaeI	CTAG	2 cut(s)	1067, 1098
MaeII	ACGT	4 cut(s)	171, 227, 282, 599
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	5 cut(s)	305, 511, 551, 899, 1065
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	5 cut(s)	303, 509, 549, 897, 1063
MboII	GAAGA	7 cut(s)	290, 306, 309, 558, 905, 924, 1113
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	3 cut(s)	168, 531, 540
MluCI	AATT	4 cut(s)	756, 928, 1052, 1092
MluI	ACGCGT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	2 cut(s)	438, 766
MroI	TCCGGA	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	1085
MspI	CCGG	6 cut(s)	338, 418, 435, 452, 497, 521
MspR9I	CCNGG	4 cut(s)	435, 452, 463, 723
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	2 cut(s)	463, 723
MvnI	CGCG	2 cut(s)	245, 258
MwoI	GCNNNNNNNGC	4 cut(s)	17, 218, 526, 535
NciI	CCSGG	2 cut(s)	435, 452
NdeII	GATC	5 cut(s)	303, 509, 549, 897, 1063
NlaIII	CATG	7 cut(s)	43, 126, 143, 650, 682, 691, 767
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	2 cut(s)	510, 560
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	2 cut(s)	126, 682
PciI	ACATGT	2 cut(s)	122, 678
PcsI	WCGNNNNNNNCGW	5 cut(s)	326, 356, 531, 537, 566
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	438, 643, 979
PflFI	GACNNNGTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	806
PkrI	GCNGC	5 cut(s)	220, 260, 519, 847, 1084
Ple19I	CGATCG	1 cut(s)	552
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PpuMI	RGGWCCY	1 cut(s)	555
PscI	ACATGT	2 cut(s)	122, 678
PshAI	GACNNNNGTC	3 cut(s)	47, 73, 99
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	461, 721
PspFI	CCCAGC	1 cut(s)	1114
PspGI	CCWGG	2 cut(s)	461, 721
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	2 cut(s)	420, 555
PspPPI	RGGWCCY	1 cut(s)	555
PsyI	GACNNNGTC	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	1085
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SalI	GTCGAC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	5 cut(s)	219, 259, 518, 846, 1083
Sau3AI	GATC	5 cut(s)	303, 509, 549, 897, 1063
Sau96I	GGNCC	2 cut(s)	420, 555
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	4 cut(s)	435, 452, 463, 723
SduI	GDGCHC	3 cut(s)	168, 531, 540
SfaNI	GCATC	4 cut(s)	20, 53, 79, 368
SfcI	CTRYAG	2 cut(s)	936, 1041
SgrDI	CGTCGACG	1 cut(s)	322
SinI	GGWCC	2 cut(s)	420, 555
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	4 cut(s)	756, 928, 1052, 1092
SsiI	CCGC	6 cut(s)	200, 258, 261, 442, 517, 685
SspMI	CTAG	2 cut(s)	1067, 1098
StyD4I	CCNGG	4 cut(s)	433, 450, 461, 721
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	4 cut(s)	174, 230, 285, 602
TaqI	TCGA	2 cut(s)	323, 665
TasI	AATT	4 cut(s)	756, 928, 1052, 1092
TauI	GCSGC	2 cut(s)	261, 520
TfiI	GAWTC	3 cut(s)	438, 643, 979
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	218, 845, 1082
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	5 cut(s)	156, 870, 936, 1014, 1024
TspGWI	ACGGA	3 cut(s)	463, 467, 1026
Tth111I	GACNNNGTC	1 cut(s)	490
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	420, 555
XapI	RAATTY	1 cut(s)	1052
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	2 cut(s)	126, 682
XmiI	GTMKAC	2 cut(s)	119, 323
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	2 cut(s)	1067, 1098
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.