Rw4G030460

HD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009302
Physical Location & Seq
Reverse (-)
57184212 .. 57185624
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030460.1

Sequence Viewer

Length: 402 bp
ATGTACCGCATGGCTTTGATGTCTTTGATTGCTGGTGATATTCCTGCTATCGTTGGAGATATAACACCATCTGATGGTGTGCCTAAAAAGGAAAAGAGCAGAATGGAGGAAGCAGCTTTGAATGAAATGTGTGTGGTTCTTGGTGGAGGGATGAGAGCTGAAGAGATCAAAGAGCTTTGGGCAGAGTATGAAAACAATTCTTCTATAGAGGCTAATCTTGTGAAGGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAGTATGAAATGGAACACGGAAAAGTGCTGGATGAGTTTTTCATTTCTACAGCAGGAAAATTTCAGACTGATCTAGGAAAGAGTTGGGCAGCTGAGATCATTTCTAGAAGAAATACACGGCTGGGAAAAAGCCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD_3

Protein Analysis

133

Amino Acids

14.89

Weight (kDa)

4.8

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD_3 PF13023 16 - 111 6.5e-20 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 2 cut(s) 121, 242
AluBI AGCT 4 cut(s) 116, 158, 175, 353
AluI AGCT 4 cut(s) 116, 158, 175, 353
ApeKI GCWGC 2 cut(s) 113, 350
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 47
BbvI GCAGC 2 cut(s) 125, 362
BccI CCATC 2 cut(s) 68, 76
BceAI ACGGC 1 cut(s) 395
BfaI CTAG 2 cut(s) 335, 366
BfmI CTRYAG 2 cut(s) 204, 309
BisI GCNGC 2 cut(s) 114, 351
BlsI GCNGC 2 cut(s) 115, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 156, 298
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 125, 362
BseYI CCCAGC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 74
Bsp143I GATC 3 cut(s) 165, 331, 357
BspACI CCGC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 346
BssMI GATC 3 cut(s) 165, 331, 357
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 156, 298
BstKTI GATC 3 cut(s) 168, 334, 360
BstMBI GATC 3 cut(s) 165, 331, 357
BstSFI CTRYAG 2 cut(s) 204, 309
BstV1I GCAGC 2 cut(s) 125, 362
BtsCI GGATG 2 cut(s) 156, 298
Cac8I GCNNGC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 10
CviJI RGCY 8 cut(s) 14, 116, 158, 175, 212, 353, 382, 393
CviKI_1 RGCY 8 cut(s) 14, 116, 158, 175, 212, 353, 382, 393
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 354
DpnI GATC 3 cut(s) 167, 333, 359
DpnII GATC 3 cut(s) 165, 331, 357
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 180
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 62, 189, 206, 267
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 114, 351
FokI GGATG 2 cut(s) 163, 305
Fsp4HI GCNGC 2 cut(s) 114, 351
FspBI CTAG 2 cut(s) 335, 366
GluI GCNGC 2 cut(s) 114, 351
GsaI CCCAGC 1 cut(s) 386
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 247
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 73, 327
Hpy188III TCNNGA 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 165, 331, 357
LpnPI CCDG 5 cut(s) 18, 57, 275, 300, 368
Lsp1109I GCAGC 2 cut(s) 125, 362
MaeI CTAG 2 cut(s) 335, 366
MalI GATC 3 cut(s) 167, 333, 359
MboI GATC 3 cut(s) 165, 331, 357
MboII GAAGA 3 cut(s) 173, 192, 381
MluCI AATT 2 cut(s) 196, 320
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 3 cut(s) 100, 140, 202
MroXI GAANNNNTTC 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 353
NdeII GATC 3 cut(s) 165, 331, 357
NlaIII CATG 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 247
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 115, 352
PspFI CCCAGC 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 114, 351
Sau3AI GATC 3 cut(s) 165, 331, 357
SetI ASST 4 cut(s) 118, 160, 177, 355
SfcI CTRYAG 2 cut(s) 204, 309
Sse9I AATT 2 cut(s) 196, 320
SsiI CCGC 1 cut(s) 7
SspMI CTAG 2 cut(s) 335, 366
TasI AATT 2 cut(s) 196, 320
TfiI GAWTC 1 cut(s) 247
TseI GCWGC 2 cut(s) 113, 350
TspDTI ATGAA 4 cut(s) 138, 204, 282, 292
TspGWI ACGGA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 320
XbaI TCTAGA 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 335, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.