Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009302

Physical Location & Seq

Genomic Coordinates Reverse (-)

3673980 .. 3677251

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGCTTAATTCCCCAACCCGCTGCGCGGCCCCACTGACCCGCTCTGTTCCACCTCGTTCGCCTCTCGCTTTCTTCAATCGGACCTTCTCCAGACCCCGATTTTCCACCGAAGTCCCGGCCGCCAGGCTCGTCTCCGTTCGTTGTCAGACGCCCAGTCCGGACGGCTTCGCGTCCAAGCGCTCAGTGAGTTTGGACGAATCCGAAGCTTCGATCGGGTCCTCGGATTCTTCATCCGCGTCCTCCGCCATTGATTTTCTCACATTGTGTCACCGTCTCAAGACCACAAAAAGGAAGGGTTGGATCAATCAGGGAATAAAGGGTCCAGAGTCCATCGCAGATCATATGTACCGCATGGCTTTGATGTCTTTGATTGCTGGTGGCGTTCCAGGCTTGAATAGAGAAAGGTGTATCAAGATAGCAATTGTGCATGACATCGCAGAAGCTATTGTTGGAGATATAACACCATCTGATGGTGTACCGAAAGCAGTAAAGAGCAAAATGGAGCAAGAAGCATTGGATGAAATGTGTTTAGTTCTCGGTGGAGGGATTAGGGCTGAAGAGATCAAAGATCTTTGGTTGGAGTATGAAAATAATTCGTCCATAGAGGCTAATCTTGTGAAAGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAATACGAAATGGAACACGGAAAGGTGCTGGATGAGTTCTTCATTTCGACAGCAGGCAAATTCCAAACTGAACTAGGAAAGAGTTGGGCAGCTGAGATCATTGCTAGAAGAGATTCACGGTTGGGCAATACTCGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD_3

Protein Analysis

267

Amino Acids

29.22

Weight (kDa)

6.16

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YfbR-like	PF12917	86 - 227	3.1e-06	5'-deoxynucleotidase YfbR-like
HD_3	PF13023	91 - 243	1.7e-44	HD domain
HD	PF01966	113 - 215	1.6e-08	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26160 AT1G26160
fragaria_vesca	FvH4_1g00280 FvH4_4g28490 FvH4_4g28490
malus_domestica	MD16G1051400.v1.1
prunus_persica	Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1
pyrus_communis	pycom16g04520
rosa_chinensis	RchiOBHm_Chr4g0436461
rosa_laevigata	RLG00000006517
rosa_multiflora	Rmu_sc0000579.1_g000006
rosa_roxburghii	Rroxscaffold_5G00377600
rosa_rugosa	Rorug04G0294000 Rorug04G0294100 Rorug04G0294200
rosa_samantha	Rh4AG348500 Rh4BG357200 Rh4CG371700 Rh4DG350900
rosa_wichuraiana	Rw4G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	4 cut(s)	29, 173, 239, 795
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	350, 480
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
AgsI	TTSAA	3 cut(s)	79, 397, 641
AhdI	GACNNNNNGTC	1 cut(s)	156
AjnI	CCWGG	2 cut(s)	125, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	209, 446, 752
AluI	AGCT	3 cut(s)	209, 446, 752
Alw26I	GTCTC	2 cut(s)	139, 281
AlwI	GGATC	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	160
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	2 cut(s)	30, 120
ApeKI	GCWGC	2 cut(s)	24, 749
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	2 cut(s)	645, 772
AspLEI	GCGC	3 cut(s)	7, 29, 183
AspS9I	GGNCC	4 cut(s)	31, 84, 219, 323
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	3 cut(s)	84, 219, 323
BbvI	GCAGC	2 cut(s)	11, 761
BccI	CCATC	3 cut(s)	341, 467, 475
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	127, 390
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	139, 281
BfaI	CTAG	2 cut(s)	734, 765
BfoI	RGCGCY	2 cut(s)	8, 184
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	4 cut(s)	25, 30, 123, 750
BlsI	GCNGC	4 cut(s)	26, 31, 124, 751
Bme1390I	CCNGG	3 cut(s)	119, 127, 390
Bme18I	GGWCC	3 cut(s)	84, 219, 323
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmgT120I	GGNCC	4 cut(s)	31, 84, 219, 323
BmiI	GGNNCC	3 cut(s)	33, 220, 324
BmrFI	CCNGG	3 cut(s)	119, 127, 390
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 291, 473
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	759
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	127, 390
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	233, 526, 697
BseLI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	198, 744
BseNI	ACTGG	1 cut(s)	156
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	11, 761
Bsh1236I	CGCG	4 cut(s)	29, 173, 239, 795
Bsh1285I	CGRYCG	2 cut(s)	123, 216
BshFI	GGCC	2 cut(s)	32, 122
BsiEI	CGRYCG	2 cut(s)	123, 216
BsiSI	CCGG	2 cut(s)	119, 161
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
BsmAI	GTCTC	2 cut(s)	139, 281
BsmBI	CGTCTC	2 cut(s)	139, 281
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	32, 122
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
Bsp68I	TCGCGA	1 cut(s)	795
BspACI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
BspANI	GGCC	2 cut(s)	32, 122
BspCNI	CTCAG	2 cut(s)	197, 745
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	4 cut(s)	29, 173, 239, 795
BspLI	GGNNCC	3 cut(s)	33, 220, 324
BspPI	GGATC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	127, 390
Bst4CI	ACNGT	2 cut(s)	275, 780
Bst6I	CTCTTC	2 cut(s)	555, 763
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	654, 715
BstDEI	CTNAG	2 cut(s)	184, 753
BstF5I	GGATG	3 cut(s)	233, 526, 697
BstFNI	CGCG	4 cut(s)	29, 173, 239, 795
BstH2I	RGCGCY	2 cut(s)	8, 184
BstHHI	GCGC	3 cut(s)	7, 29, 183
BstKTI	GATC	6 cut(s)	216, 306, 343, 567, 574, 759
BstMAI	GTCTC	2 cut(s)	139, 281
BstMBI	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
BstMCI	CGRYCG	2 cut(s)	123, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 390, 792
BstNI	CCWGG	2 cut(s)	127, 390
BstSCI	CCNGG	3 cut(s)	117, 125, 388
BstUI	CGCG	4 cut(s)	29, 173, 239, 795
BstV1I	GCAGC	2 cut(s)	11, 761
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	32, 122
BtgZI	GCGATG	2 cut(s)	319, 421
BtsCI	GGATG	3 cut(s)	233, 526, 697
BtsIMutI	CAGTG	2 cut(s)	35, 192
BtuMI	TCGCGA	1 cut(s)	795
Cac8I	GCNNGC	2 cut(s)	654, 715
CfoI	GCGC	3 cut(s)	7, 29, 183
Cfr13I	GGNCC	4 cut(s)	31, 84, 219, 323
CseI	GACGC	3 cut(s)	160, 162, 228
Csp6I	GTAC	2 cut(s)	349, 479
CviAII	CATG	2 cut(s)	355, 431
CviQI	GTAC	2 cut(s)	349, 479
DdeI	CTNAG	2 cut(s)	184, 753
DpnI	GATC	6 cut(s)	215, 305, 342, 566, 573, 758
DpnII	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
DraIII	CACNNNGTG	1 cut(s)	267
DriI	GACNNNNNGTC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	555, 763
Eam1105I	GACNNNNNGTC	1 cut(s)	156
EarI	CTCTTC	2 cut(s)	555, 763
EciI	GGCGGA	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	84, 219, 323
Eco47III	AGCGCT	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	125, 388
Esp3I	CGTCTC	2 cut(s)	139, 281
FaeI	CATG	2 cut(s)	358, 434
FaiI	YATR	7 cut(s)	345, 347, 356, 432, 461, 588, 605
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	2 cut(s)	354, 430
FauI	CCCGC	2 cut(s)	29, 50
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	25, 30, 123, 750
FokI	GGATG	3 cut(s)	220, 533, 704
Fsp4HI	GCNGC	4 cut(s)	25, 30, 123, 750
FspBI	CTAG	2 cut(s)	734, 765
GlaI	GCGC	3 cut(s)	6, 28, 182
GluI	GCNGC	4 cut(s)	25, 30, 123, 750
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	2 cut(s)	8, 184
HaeIII	GGCC	2 cut(s)	32, 122
HapII	CCGG	2 cut(s)	119, 161
HgaI	GACGC	3 cut(s)	160, 162, 228
HhaI	GCGC	3 cut(s)	7, 29, 183
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	358, 434
Hin6I	GCGC	3 cut(s)	5, 27, 181
HinP1I	GCGC	3 cut(s)	5, 27, 181
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	5 cut(s)	200, 227, 329, 646, 773
HpaII	CCGG	2 cut(s)	119, 161
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	5 cut(s)	84, 150, 205, 226, 472
Hpy188III	TCNNGA	6 cut(s)	93, 161, 280, 326, 415, 794
Hpy8I	GTNNAC	1 cut(s)	479
HpyAV	CCTTC	2 cut(s)	97, 289
HpyCH4III	ACNGT	2 cut(s)	275, 780
HpyCH4V	TGCA	2 cut(s)	430, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 390, 792
HpyF3I	CTNAG	2 cut(s)	184, 753
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	358, 434
HspAI	GCGC	3 cut(s)	5, 27, 181
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	11, 761
MaeI	CTAG	2 cut(s)	734, 765
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	6 cut(s)	215, 305, 342, 566, 573, 758
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
MboII	GAAGA	5 cut(s)	67, 222, 572, 691, 780
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	1 cut(s)	571
MluCI	AATT	4 cut(s)	10, 423, 595, 719
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	3 cut(s)	281, 433, 561
MnlI	CCTC	6 cut(s)	66, 75, 232, 253, 539, 601
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	2 cut(s)	645, 772
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	2 cut(s)	24, 752
MspI	CCGG	2 cut(s)	119, 161
MspR9I	CCNGG	3 cut(s)	119, 127, 390
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	127, 390
MvnI	CGCG	4 cut(s)	29, 173, 239, 795
MwoI	GCNNNNNNNGC	3 cut(s)	245, 390, 792
NciI	CCSGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
NlaIII	CATG	2 cut(s)	358, 434
NlaIV	GGNNCC	3 cut(s)	33, 220, 324
NmuCI	GTSAC	1 cut(s)	269
NruI	TCGCGA	1 cut(s)	795
PdmI	GAANNNNTTC	2 cut(s)	645, 772
PfeI	GAWTC	4 cut(s)	200, 227, 646, 773
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	26, 31, 124, 751
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	125, 388
PspGI	CCWGG	2 cut(s)	125, 388
PspN4I	GGNNCC	3 cut(s)	33, 220, 324
PspPI	GGNCC	4 cut(s)	31, 84, 219, 323
PspPPI	RGGWCCY	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	571
PvuI	CGATCG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	752
RruI	TCGCGA	1 cut(s)	795
RsaI	GTAC	2 cut(s)	350, 480
RsaNI	GTAC	2 cut(s)	349, 479
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	4 cut(s)	25, 30, 123, 750
Sau3AI	GATC	6 cut(s)	213, 303, 340, 564, 571, 756
Sau96I	GGNCC	4 cut(s)	31, 84, 219, 323
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	119, 127, 390
SetI	ASST	7 cut(s)	58, 89, 211, 410, 448, 687, 754
SinI	GGWCC	3 cut(s)	84, 219, 323
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	4 cut(s)	10, 423, 595, 719
SsiI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
SspMI	CTAG	2 cut(s)	734, 765
StyD4I	CCNGG	3 cut(s)	117, 125, 388
TaaI	ACNGT	2 cut(s)	275, 780
TaqI	TCGA	2 cut(s)	212, 707
TasI	AATT	4 cut(s)	10, 423, 595, 719
TauI	GCSGC	2 cut(s)	32, 125
TfiI	GAWTC	4 cut(s)	200, 227, 646, 773
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	42, 192
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	24, 749
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	222, 537, 603, 691
TspGWI	ACGGA	2 cut(s)	127, 693
TspRI	CASTG	2 cut(s)	42, 192
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	3 cut(s)	84, 219, 323
XapI	RAATTY	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	645, 772
XspI	CTAG	2 cut(s)	734, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.