Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009302

Physical Location & Seq

Genomic Coordinates Reverse (-)

2872724 .. 2875325

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04520.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCGCTTAATTCCCCAACCCGCTGCGCGGCTCCACTGACCCGCTCTGTTCCACCTCGTTCGCCTCTCGCTTTCTTCAATCGGACCTTCTCCAGACCCGGATTTTCCACCGAAGTCCCGGCCGCCAGGCTCGTCTCCGTTCGTTGCCAGGCGCCCAGTCCGGACGGCTTCGCGTCCAAGCGCTCAGTGAATTTGGACGAATCCGAAGCTTCGATTGGGTCCTCGGGTTCTTCATCCGCGTCCTCCGCCATTGATTTTCTCACATTGTGTCACCGTCTCAAGACCACAAAAAGGAAGGGTTGGATCAATCAGGGAATAAAGGGTCCAGAGTCCATCGCAGATCACATGTACCGCATGGCTTTGATGTCTTTGATTGCTGGTGACGTTCCAGGATTGAATAGAGAAAGGTGTATCAAGATAGCAATTGTGCATGACATCGCAGAAGCTATTGTCGGAGATATAACACCATCCGATGGTGTACCGAAAGCAGTAAAGAGTAAAATGGAGCAAGAAGCATTGGATGAAATGTGTTTAGTTCTCGGTGGAGGGATTAGGGCTGAAGAGATCAAAGAACTTTGGTCAGAGTATGAAAATAATTCGTCCATAGAGGCTAATCTTGTGAAAGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAATACGAAATGGAACACGGAAAGGTGCTGGATGAGTTCTTCATTTCGACAGCAGGCAAATTCCAAACTGAACTAGGAAAGAGTTGGGCAGCTGAGATCATTGCTAGAAGAAATTCACGGTTGGGCAATACTCGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD_3

Protein Analysis

267

Amino Acids

29.11

Weight (kDa)

6.16

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26160 AT1G26160
fragaria_vesca	FvH4_1g00280 FvH4_4g28490 FvH4_4g28490
malus_domestica	MD16G1051400.v1.1
prunus_persica	Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1
pyrus_communis	pycom16g04520
rosa_chinensis	RchiOBHm_Chr4g0436461
rosa_laevigata	RLG00000006517
rosa_multiflora	Rmu_sc0000579.1_g000006
rosa_roxburghii	Rroxscaffold_5G00377600
rosa_rugosa	Rorug04G0294000 Rorug04G0294100 Rorug04G0294200
rosa_samantha	Rh4AG348500 Rh4BG357200 Rh4CG371700 Rh4DG350900
rosa_wichuraiana	Rw4G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	4 cut(s)	29, 173, 239, 795
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	190, 719, 772
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	350, 480
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	79, 397, 641
AjnI	CCWGG	3 cut(s)	125, 147, 388
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	3 cut(s)	209, 446, 752
AluI	AGCT	3 cut(s)	209, 446, 752
Alw26I	GTCTC	2 cut(s)	139, 281
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	160
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	24, 749
ApoI	RAATTY	3 cut(s)	190, 719, 772
Asp700I	GAANNNNTTC	2 cut(s)	645, 772
AspLEI	GCGC	4 cut(s)	7, 29, 154, 183
AspS9I	GGNCC	3 cut(s)	84, 219, 323
AsuC2I	CCSGG	2 cut(s)	99, 119
AsuHPI	GGTGA	2 cut(s)	263, 392
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	3 cut(s)	84, 219, 323
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	11, 761
BccI	CCATC	3 cut(s)	341, 467, 475
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	127, 149, 390
BcnI	CCSGG	2 cut(s)	99, 119
BcoDI	GTCTC	2 cut(s)	139, 281
BfaI	CTAG	2 cut(s)	734, 765
BfoI	RGCGCY	3 cut(s)	8, 155, 184
BisI	GCNGC	4 cut(s)	25, 30, 123, 750
BlsI	GCNGC	4 cut(s)	26, 31, 124, 751
Bme1390I	CCNGG	5 cut(s)	99, 119, 127, 149, 390
Bme18I	GGWCC	3 cut(s)	84, 219, 323
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	84, 219, 323
BmiI	GGNNCC	4 cut(s)	33, 153, 220, 324
BmrFI	CCNGG	5 cut(s)	99, 119, 127, 149, 390
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	2 cut(s)	99, 119
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 291, 473
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	759
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	3 cut(s)	127, 149, 390
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	4 cut(s)	233, 467, 526, 697
BseLI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	198, 744
BseNI	ACTGG	1 cut(s)	156
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	11, 761
Bsh1236I	CGCG	4 cut(s)	29, 173, 239, 795
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	99, 119, 161
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	28, 291, 473
BsmAI	GTCTC	2 cut(s)	139, 281
BsmBI	CGTCTC	2 cut(s)	139, 281
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	303, 340, 564, 756
Bsp68I	TCGCGA	1 cut(s)	795
BspACI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	2 cut(s)	197, 745
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	4 cut(s)	29, 173, 239, 795
BspLI	GGNNCC	4 cut(s)	33, 153, 220, 324
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	303, 340, 564, 756
BssNI	GRCGYC	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	127, 149, 390
Bst4CI	ACNGT	2 cut(s)	275, 780
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	654, 715
BstDEI	CTNAG	2 cut(s)	184, 753
BstF5I	GGATG	4 cut(s)	233, 467, 526, 697
BstFNI	CGCG	4 cut(s)	29, 173, 239, 795
BstH2I	RGCGCY	3 cut(s)	8, 155, 184
BstHHI	GCGC	4 cut(s)	7, 29, 154, 183
BstKTI	GATC	4 cut(s)	306, 343, 567, 759
BstMAI	GTCTC	2 cut(s)	139, 281
BstMBI	GATC	4 cut(s)	303, 340, 564, 756
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 792
BstNI	CCWGG	3 cut(s)	127, 149, 390
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	5 cut(s)	97, 117, 125, 147, 388
BstUI	CGCG	4 cut(s)	29, 173, 239, 795
BstV1I	GCAGC	2 cut(s)	11, 761
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	122
BtgZI	GCGATG	2 cut(s)	319, 421
BtsCI	GGATG	4 cut(s)	233, 467, 526, 697
BtsIMutI	CAGTG	2 cut(s)	35, 192
BtuMI	TCGCGA	1 cut(s)	795
Cac8I	GCNNGC	2 cut(s)	654, 715
CfoI	GCGC	4 cut(s)	7, 29, 154, 183
Cfr13I	GGNCC	3 cut(s)	84, 219, 323
CseI	GACGC	2 cut(s)	162, 228
Csp6I	GTAC	2 cut(s)	349, 479
CviAII	CATG	3 cut(s)	346, 355, 431
CviQI	GTAC	2 cut(s)	349, 479
DdeI	CTNAG	2 cut(s)	184, 753
DinI	GGCGCC	1 cut(s)	153
DpnI	GATC	4 cut(s)	305, 342, 566, 758
DpnII	GATC	4 cut(s)	303, 340, 564, 756
DraIII	CACNNNGTG	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	84, 219, 323
Eco47III	AGCGCT	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	125, 147, 388
EgeI	GGCGCC	1 cut(s)	153
EheI	GGCGCC	1 cut(s)	153
Esp3I	CGTCTC	2 cut(s)	139, 281
FaeI	CATG	3 cut(s)	349, 358, 434
FaiI	YATR	6 cut(s)	347, 356, 432, 461, 588, 605
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	3 cut(s)	345, 354, 430
FauI	CCCGC	2 cut(s)	29, 50
Fnu4HI	GCNGC	4 cut(s)	25, 30, 123, 750
FokI	GGATG	4 cut(s)	220, 454, 533, 704
Fsp4HI	GCNGC	4 cut(s)	25, 30, 123, 750
FspBI	CTAG	2 cut(s)	734, 765
GlaI	GCGC	4 cut(s)	6, 28, 153, 182
GluI	GCNGC	4 cut(s)	25, 30, 123, 750
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	3 cut(s)	8, 155, 184
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	3 cut(s)	99, 119, 161
HgaI	GACGC	2 cut(s)	162, 228
HhaI	GCGC	4 cut(s)	7, 29, 154, 183
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	349, 358, 434
Hin6I	GCGC	4 cut(s)	5, 27, 152, 181
HinP1I	GCGC	4 cut(s)	5, 27, 152, 181
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	200, 329, 646
HpaII	CCGG	3 cut(s)	99, 119, 161
HphI	GGTGA	2 cut(s)	263, 392
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	5 cut(s)	84, 205, 455, 472, 583
Hpy188III	TCNNGA	6 cut(s)	93, 161, 280, 326, 415, 794
Hpy8I	GTNNAC	1 cut(s)	479
HpyAV	CCTTC	2 cut(s)	97, 289
HpyCH4III	ACNGT	2 cut(s)	275, 780
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	430, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 792
HpyF3I	CTNAG	2 cut(s)	184, 753
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	349, 358, 434
HspAI	GCGC	4 cut(s)	5, 27, 152, 181
KasI	GGCGCC	1 cut(s)	151
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	303, 340, 564, 756
LmnI	GCTCC	2 cut(s)	37, 505
Lsp1109I	GCAGC	2 cut(s)	11, 761
MaeI	CTAG	2 cut(s)	734, 765
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	269, 380
MalI	GATC	4 cut(s)	305, 342, 566, 758
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	303, 340, 564, 756
MboII	GAAGA	5 cut(s)	67, 222, 572, 691, 780
MfeI	CAATTG	1 cut(s)	423
MluCI	AATT	6 cut(s)	10, 190, 423, 595, 719, 772
Mly113I	GGCGCC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	281, 433
MnlI	CCTC	6 cut(s)	66, 75, 232, 253, 539, 601
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	2 cut(s)	645, 772
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	2 cut(s)	24, 752
MspI	CCGG	3 cut(s)	99, 119, 161
MspR9I	CCNGG	5 cut(s)	99, 119, 127, 149, 390
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	3 cut(s)	127, 149, 390
MvnI	CGCG	4 cut(s)	29, 173, 239, 795
MwoI	GCNNNNNNNGC	2 cut(s)	245, 792
NarI	GGCGCC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	99, 119
NdeII	GATC	4 cut(s)	303, 340, 564, 756
NlaIII	CATG	3 cut(s)	349, 358, 434
NlaIV	GGNNCC	4 cut(s)	33, 153, 220, 324
NmuCI	GTSAC	2 cut(s)	269, 380
NruI	TCGCGA	1 cut(s)	795
NspI	RCATGY	1 cut(s)	349
PciI	ACATGT	1 cut(s)	345
PdmI	GAANNNNTTC	2 cut(s)	645, 772
PfeI	GAWTC	2 cut(s)	200, 646
PflMI	CCANNNNNTGG	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	26, 31, 124, 751
PleI	GAGTC	1 cut(s)	337
PluTI	GGCGCC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	3 cut(s)	125, 147, 388
PspGI	CCWGG	3 cut(s)	125, 147, 388
PspN4I	GGNNCC	4 cut(s)	33, 153, 220, 324
PspPI	GGNCC	3 cut(s)	84, 219, 323
PspPPI	RGGWCCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	752
RruI	TCGCGA	1 cut(s)	795
RsaI	GTAC	2 cut(s)	350, 480
RsaNI	GTAC	2 cut(s)	349, 479
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	4 cut(s)	25, 30, 123, 750
Sau3AI	GATC	4 cut(s)	303, 340, 564, 756
Sau96I	GGNCC	3 cut(s)	84, 219, 323
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	5 cut(s)	99, 119, 127, 149, 390
SetI	ASST	8 cut(s)	58, 89, 211, 387, 410, 448, 687, 754
SfoI	GGCGCC	1 cut(s)	153
SinI	GGWCC	3 cut(s)	84, 219, 323
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	6 cut(s)	10, 190, 423, 595, 719, 772
SsiI	CCGC	7 cut(s)	22, 29, 43, 123, 237, 246, 352
SspDI	GGCGCC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	734, 765
StyD4I	CCNGG	5 cut(s)	97, 117, 125, 147, 388
TaaI	ACNGT	2 cut(s)	275, 780
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	212, 707
TasI	AATT	6 cut(s)	10, 190, 423, 595, 719, 772
TauI	GCSGC	2 cut(s)	32, 125
TfiI	GAWTC	2 cut(s)	200, 646
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	42, 192
TseFI	GTSAC	2 cut(s)	269, 380
TseI	GCWGC	2 cut(s)	24, 749
Tsp45I	GTSAC	2 cut(s)	269, 380
TspDTI	ATGAA	4 cut(s)	222, 537, 603, 691
TspGWI	ACGGA	2 cut(s)	127, 693
TspRI	CASTG	2 cut(s)	42, 192
Van91I	CCANNNNNTGG	1 cut(s)	473
VpaK11BI	GGWCC	3 cut(s)	84, 219, 323
XapI	RAATTY	3 cut(s)	190, 719, 772
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	2 cut(s)	645, 772
XspI	CTAG	2 cut(s)	734, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.