Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009302

Physical Location & Seq

Genomic Coordinates Reverse (-)

29115267 .. 29117557

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGGTAAATTCACCGACGAGTCGCTGCGCCGCTCAGCTCAGCCGCTCCCTCGCTCCTCGCTCGCCTCTCTCTTTCCTCAATCGGACCTTCCCCCGACCCGACCCGCCCACCCCCAGGCTCGTCTCCGTCCGTTGCCACGCGCCGTCTCCGGACCCCTCCCGATCCCACCGGCCGGTCGGCCTGGGCCAGCCCGAAGCTCCGATCGCGTCCTCCACCTCCTCCGCCATCGATTTTCTCACATTGTGTCACTCTCTCAAGACAACTAAGAGGAAAGGGTGGGTGAACCATGGAATAATCAAAGGGGAGTCGATTGCTGATCATATGTACCGCATGGCTTTGATGTCTTTGATTGCTGGCGATATTCCTGGTTTGAATAGAGAAAGGTGTATAAAGATTGCTATTGTGCATGACATTGCTGAAGCCATCGTTGGTGATATAACACCATCTGATAATGTGCCCAAAAAGGAAAAGAGTAGAATGGAAGCAGCAGCTTTGAATGAAATGTGCATAGTTCTTGGTGGAGGGATGAGAGCTGAAGAGATCAAAGAACTTTGGGAAGAATATGAAAATAATTCCTCCGTCGAGGCAAATCTTGTGAAGGATTTTGACAAAGTTGAAATGATTCTGCAAGCATTGGAGTATGAAATGGAACACGGAAAAGTGCTGGACGAGTTTTTCATTTCTACTGCAGGAAAGTTTCAGACTGATTTAGGGAAGAGTTGGGCAGCTGAGATCATTTCTAGAAGAAATACACAGCTGGGCAAAAGCCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD_3

Protein Analysis

260

Amino Acids

28.56

Weight (kDa)

7.05

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YfbR-like	PF12917	79 - 220	1.7e-06	5'-deoxynucleotidase YfbR-like
HD_3	PF13023	84 - 236	8e-46	HD domain
HD	PF01966	106 - 208	2.8e-09	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26160 AT1G26160
fragaria_vesca	FvH4_1g00280 FvH4_4g28490 FvH4_4g28490
malus_domestica	MD16G1051400.v1.1
prunus_persica	Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1 Prupe.1G301100_v2.0.a1
pyrus_communis	pycom16g04520
rosa_chinensis	RchiOBHm_Chr4g0436461
rosa_laevigata	RLG00000006517
rosa_multiflora	Rmu_sc0000579.1_g000006
rosa_roxburghii	Rroxscaffold_5G00377600
rosa_rugosa	Rorug04G0294000 Rorug04G0294100 Rorug04G0294200
rosa_samantha	Rh4AG348500 Rh4BG357200 Rh4CG371700 Rh4DG350900
rosa_wichuraiana	Rw4G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	35, 48
AccII	CGCG	2 cut(s)	143, 209
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	6 cut(s)	5, 33, 46, 107, 225, 331
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	2 cut(s)	441, 558
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	117, 175
AgsI	TTSAA	3 cut(s)	376, 499, 620
AjnI	CCWGG	3 cut(s)	116, 183, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	6 cut(s)	40, 200, 494, 536, 731, 760
AluI	AGCT	6 cut(s)	40, 200, 494, 536, 731, 760
Alw26I	GTCTC	2 cut(s)	130, 153
AlwI	GGATC	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	3 cut(s)	173, 181, 187
ApeKI	GCWGC	4 cut(s)	27, 488, 491, 728
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	32, 145
AspS9I	GGNCC	3 cut(s)	87, 154, 187
AsuHPI	GGTGA	3 cut(s)	6, 295, 446
AvaII	GGWCC	2 cut(s)	87, 154
BaeGI	GKGCMC	1 cut(s)	462
BbvI	GCAGC	4 cut(s)	14, 500, 503, 740
BccI	CCATC	3 cut(s)	236, 434, 454
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	3 cut(s)	118, 185, 369
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	130, 153
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	6 cut(s)	28, 33, 46, 489, 492, 729
BlpI	GCTNAGC	2 cut(s)	36, 41
BlsI	GCNGC	6 cut(s)	29, 34, 47, 490, 493, 730
Bme1390I	CCNGG	3 cut(s)	118, 185, 369
Bme18I	GGWCC	2 cut(s)	87, 154
BmgT120I	GGNCC	3 cut(s)	87, 154, 187
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	118, 185, 369
Bpu1102I	GCTNAGC	2 cut(s)	36, 41
BpuEI	CTTGAG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	116, 184, 289
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 175
Bse118I	RCCGGY	2 cut(s)	171, 175
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	118, 185, 369
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	116, 184, 289
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	117, 175
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	50, 55, 723
BseRI	GAGGAG	2 cut(s)	48, 211
BseSI	GKGCMC	1 cut(s)	462
BseX3I	CGGCCG	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	14, 500, 503, 740
BseYI	CCCAGC	1 cut(s)	760
Bsh1236I	CGCG	2 cut(s)	143, 209
Bsh1285I	CGRYCG	3 cut(s)	176, 180, 207
BshFI	GGCC	3 cut(s)	175, 183, 189
BshVI	ATCGAT	1 cut(s)	231
BsiEI	CGRYCG	3 cut(s)	176, 180, 207
BsiSI	CCGG	3 cut(s)	152, 172, 176
BslI	CCNNNNNNNGG	2 cut(s)	117, 175
BsmAI	GTCTC	2 cut(s)	130, 153
BsmBI	CGTCTC	2 cut(s)	130, 153
BsnI	GGCC	3 cut(s)	175, 183, 189
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	164, 204, 319, 543, 735
Bsp1720I	GCTNAGC	2 cut(s)	36, 41
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	6 cut(s)	5, 33, 46, 107, 225, 331
BspANI	GGCC	3 cut(s)	175, 183, 189
BspCNI	CTCAG	3 cut(s)	49, 54, 724
BspDI	ATCGAT	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	143, 209
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	1 cut(s)	159
BsrBI	CCGCTC	2 cut(s)	35, 48
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	2 cut(s)	171, 175
BssAI	RCCGGY	2 cut(s)	171, 175
BssECI	CCNNGG	3 cut(s)	116, 184, 289
BssMI	GATC	5 cut(s)	164, 204, 319, 543, 735
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	3 cut(s)	118, 185, 369
Bst6I	CTCTTC	2 cut(s)	534, 713
BstC8I	GCNNGC	4 cut(s)	65, 191, 358, 633
BstDEI	CTNAG	4 cut(s)	36, 41, 267, 732
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	2 cut(s)	143, 209
BstHHI	GCGC	2 cut(s)	32, 145
BstKTI	GATC	5 cut(s)	167, 207, 322, 546, 738
BstMAI	GTCTC	2 cut(s)	130, 153
BstMBI	GATC	5 cut(s)	164, 204, 319, 543, 735
BstMCI	CGRYCG	3 cut(s)	176, 180, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	3 cut(s)	118, 185, 369
BstSCI	CCNGG	3 cut(s)	116, 183, 367
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	462
BstUI	CGCG	2 cut(s)	143, 209
BstV1I	GCAGC	4 cut(s)	14, 500, 503, 740
BstZI	CGGCCG	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	175, 183, 189
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	534
Cac8I	GCNNGC	4 cut(s)	65, 191, 358, 633
CfoI	GCGC	2 cut(s)	32, 145
Cfr10I	RCCGGY	2 cut(s)	171, 175
Cfr13I	GGNCC	3 cut(s)	87, 154, 187
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	3 cut(s)	290, 334, 410
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	36, 41, 267, 732
DpnI	GATC	5 cut(s)	166, 206, 321, 545, 737
DpnII	GATC	5 cut(s)	164, 204, 319, 543, 735
DraIII	CACNNNGTG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	173
EagI	CGGCCG	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	534, 713
EarI	CTCTTC	2 cut(s)	534, 713
EciI	GGCGGA	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	87, 154
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	441, 558
EcoRII	CCWGG	3 cut(s)	116, 183, 367
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	130, 153
FaeI	CATG	3 cut(s)	293, 337, 413
FatI	CATG	3 cut(s)	289, 333, 409
FauI	CCCGC	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	6 cut(s)	28, 33, 46, 489, 492, 729
FokI	GGATG	1 cut(s)	541
Fsp4HI	GCNGC	6 cut(s)	28, 33, 46, 489, 492, 729
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	2 cut(s)	31, 144
GluI	GCNGC	6 cut(s)	28, 33, 46, 489, 492, 729
GsaI	CCCAGC	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	175, 183, 189
HapII	CCGG	3 cut(s)	152, 172, 176
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	2 cut(s)	32, 145
Hin1II	CATG	3 cut(s)	293, 337, 413
Hin6I	GCGC	2 cut(s)	30, 143
HinP1I	GCGC	2 cut(s)	30, 143
HinfI	GANTC	3 cut(s)	22, 308, 625
HpaII	CCGG	3 cut(s)	152, 172, 176
HphI	GGTGA	3 cut(s)	6, 295, 446
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	87, 204, 451, 705
Hpy188III	TCNNGA	4 cut(s)	152, 162, 259, 744
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	22, 587
HpyAV	CCTTC	2 cut(s)	100, 595
HpyCH4V	TGCA	4 cut(s)	409, 510, 631, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	4 cut(s)	36, 41, 267, 732
Hsp92II	CATG	3 cut(s)	293, 337, 413
HspAI	GCGC	2 cut(s)	30, 143
Kpn2I	TCCGGA	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	164, 204, 319, 543, 735
LmnI	GCTCC	3 cut(s)	53, 61, 205
Lsp1109I	GCAGC	4 cut(s)	14, 500, 503, 740
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	5 cut(s)	166, 206, 321, 545, 737
MbiI	CCGCTC	2 cut(s)	35, 48
MboI	GATC	5 cut(s)	164, 204, 319, 543, 735
MboII	GAAGA	4 cut(s)	551, 572, 730, 759
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	10, 574
MlyI	GAGTC	2 cut(s)	31, 317
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	624
MspA1I	CMGCKG	2 cut(s)	731, 760
MspI	CCGG	3 cut(s)	152, 172, 176
MspR9I	CCNGG	3 cut(s)	118, 185, 369
MvaI	CCWGG	3 cut(s)	118, 185, 369
MvnI	CGCG	2 cut(s)	143, 209
MwoI	GCNNNNNNNGC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	5 cut(s)	164, 204, 319, 543, 735
NlaIII	CATG	3 cut(s)	293, 337, 413
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	6 cut(s)	29, 34, 47, 490, 493, 730
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	30, 316
PpsI	GAGTC	2 cut(s)	30, 316
Psp6I	CCWGG	3 cut(s)	116, 183, 367
PspFI	CCCAGC	1 cut(s)	760
PspGI	CCWGG	3 cut(s)	116, 183, 367
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	3 cut(s)	87, 154, 187
PstI	CTGCAG	1 cut(s)	694
PvuI	CGATCG	1 cut(s)	207
PvuII	CAGCTG	2 cut(s)	731, 760
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SatI	GCNGC	6 cut(s)	28, 33, 46, 489, 492, 729
Sau3AI	GATC	5 cut(s)	164, 204, 319, 543, 735
Sau96I	GGNCC	3 cut(s)	87, 154, 187
SchI	GAGTC	2 cut(s)	31, 317
ScrFI	CCNGG	3 cut(s)	118, 185, 369
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	9 cut(s)	42, 92, 202, 221, 389, 496, 538, 733, 762
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	87, 154
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	10, 574
SsiI	CCGC	6 cut(s)	5, 33, 46, 107, 225, 331
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	3 cut(s)	116, 183, 367
StyI	CCWWGG	1 cut(s)	289
TaqI	TCGA	3 cut(s)	231, 311, 585
TasI	AATT	2 cut(s)	10, 574
TauI	GCSGC	2 cut(s)	35, 48
TfiI	GAWTC	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	4 cut(s)	27, 488, 491, 728
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	4 cut(s)	516, 582, 660, 670
TspGWI	ACGGA	4 cut(s)	118, 122, 571, 672
VpaK11BI	GGWCC	2 cut(s)	87, 154
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.