Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Forward (+)

9171118 .. 9173033

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGGAAGGACGCAAAAGCTGGTGGGAAGGGTAAAGGAAAGCAAGCAAGTGGTAGTGAAGAAGCTCCCTCCAAGGGTAAAGGAAAAGCAGGAAAAGCTGCAGATGGTCTTGGGACATGCACTTATGTTAAAGCAAGACATGTTTTGTGCGAGAAGCAAGGAAAGATCAACGAGGCCTACAAAAAGTTGCAGGATGGTTGGTTGAGCAACGGAGACAAGGTTCCTCCTGCTGAGTTTGCAAAGATTGCAGCAGAGTACTCTGAGTGTCCATCAGGGAAAAAAGGAGGAGATCTTGGATGGTTCCCTCGAGGAAAGATGGCAGGTCCATTCCAAGATGTCGCCTTTAATACACCTGTTGGAGTCACCAGTGCACCCTTCAAATCAACGCACGGATACCACATTATTTTATCAGAGGGAAGGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

142

Amino Acids

14.86

Weight (kDa)

9.56

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	42 - 135	2.1e-16	PPIC-type PPIASE domain
Rotamase	PF00639	75 - 136	7.6e-18	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	379
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	20, 65, 98
AluI	AGCT	3 cut(s)	20, 65, 98
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	98, 248
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	85, 260
BccI	CCATC	5 cut(s)	98, 188, 277, 291, 310
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	2 cut(s)	99, 249
BlsI	GCNGC	2 cut(s)	100, 250
BmcAI	AGTACT	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	222, 302
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	199, 302
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	222, 252
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	85, 260
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	165, 289
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	223, 253
BspLI	GGNNCC	2 cut(s)	222, 302
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	165, 289
BssT1I	CCWWGG	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	231, 261
BstF5I	GGATG	2 cut(s)	199, 302
BstKTI	GATC	2 cut(s)	168, 292
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	165, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 236, 245
BstNSI	RCATGY	2 cut(s)	120, 143
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	85, 260
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	199, 302
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	117, 140
CviJI	RGCY	4 cut(s)	20, 65, 98, 176
CviKI_1	RGCY	4 cut(s)	20, 65, 98, 176
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	231, 261
DpnI	GATC	2 cut(s)	167, 291
DpnII	GATC	2 cut(s)	165, 289
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	120, 143
FaiI	YATR	3 cut(s)	118, 126, 141
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	116, 139
Fnu4HI	GCNGC	2 cut(s)	99, 249
FokI	GGATG	2 cut(s)	206, 309
Fsp4HI	GCNGC	2 cut(s)	99, 249
GluI	GCNGC	2 cut(s)	99, 249
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	120, 143
HinfI	GANTC	1 cut(s)	360
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	262, 412
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	3 cut(s)	22, 385, 411
HpyCH4V	TGCA	6 cut(s)	101, 120, 190, 239, 248, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 236, 245
HpyF3I	CTNAG	2 cut(s)	231, 261
Hsp92II	CATG	2 cut(s)	120, 143
Kzo9I	GATC	2 cut(s)	165, 289
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	6, 75, 176, 240, 258, 306, 366, 379
Lsp1109I	GCAGC	2 cut(s)	85, 260
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	167, 291
MboI	GATC	2 cut(s)	165, 289
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	79, 166, 234, 278, 302, 315, 406
MseI	TTAA	2 cut(s)	129, 345
MwoI	GCNNNNNNNGC	3 cut(s)	95, 236, 245
NdeII	GATC	2 cut(s)	165, 289
NlaIII	CATG	2 cut(s)	120, 143
NlaIV	GGNNCC	2 cut(s)	222, 302
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	2 cut(s)	120, 143
PaeR7I	CTCGAG	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	176
PciI	ACATGT	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	100, 250
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PscI	ACATGT	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	222, 302
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	129, 345
SatI	GCNGC	2 cut(s)	99, 249
Sau3AI	GATC	2 cut(s)	165, 289
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	6 cut(s)	22, 67, 100, 222, 325, 355
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SseBI	AGGCCT	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	307
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	129, 345
Tru9I	TTAA	2 cut(s)	129, 345
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	98, 248
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	225, 405
TspRI	CASTG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	323
XceI	RCATGY	2 cut(s)	120, 143
XhoI	CTCGAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.