Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Forward (+)

1880078 .. 1881507

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCAAAAGGCAGGACGCCAAGGCCGGAGGAAAAGCCGCAGCCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTCGCGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

142

Amino Acids

14.68

Weight (kDa)

9.45

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	42 - 136	5.9e-17	PPIC-type PPIASE domain
Rotamase	PF00639	74 - 138	5.2e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	309
AciI	CCGC	9 cut(s)	39, 57, 60, 93, 230, 249, 285, 309, 369
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	255, 328
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	332, 379
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	4 cut(s)	24, 246, 322, 339
ApeKI	GCWGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	220, 323
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	98, 310
BceAI	ACGGC	2 cut(s)	211, 226
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	6 cut(s)	39, 42, 58, 61, 249, 286
BlsI	GCNGC	6 cut(s)	40, 43, 59, 62, 250, 287
BmcAI	AGTACT	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	220, 323
BmiI	GGNNCC	3 cut(s)	115, 222, 302
BsaAI	YACGTR	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	4 cut(s)	26, 248, 324, 341
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	4 cut(s)	27, 45, 84, 227
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	4 cut(s)	26, 248, 324, 341
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	165, 289
BspACI	CCGC	9 cut(s)	39, 57, 60, 93, 230, 249, 285, 309, 369
BspANI	GGCC	4 cut(s)	26, 248, 324, 341
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	115, 222, 302
BspMI	ACCTGC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	165, 289
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	46, 200, 322
BstDEI	CTNAG	2 cut(s)	66, 240
BstEII	GGTNACC	1 cut(s)	392
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	168, 292
BstMBI	GATC	2 cut(s)	165, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 236, 245
BstPI	GGTNACC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	4 cut(s)	26, 248, 324, 341
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	46, 200, 322
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	220, 323
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	389
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	66, 240
DpnI	GATC	2 cut(s)	167, 291
DpnII	GATC	2 cut(s)	165, 289
EaeI	YGGCCR	1 cut(s)	246
EciI	GGCGGA	2 cut(s)	108, 245
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	255, 328
Eco88I	CYCGRG	1 cut(s)	293
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	392
FaiI	YATR	3 cut(s)	126, 143, 390
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	388
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	39, 42, 58, 61, 249, 286
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	6 cut(s)	39, 42, 58, 61, 249, 286
GluI	GCNGC	6 cut(s)	39, 42, 58, 61, 249, 286
HaeIII	GGCC	4 cut(s)	26, 248, 324, 341
HapII	CCGG	4 cut(s)	27, 45, 84, 227
HgaI	GACGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	392
HpaII	CCGG	4 cut(s)	27, 45, 84, 227
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	4 cut(s)	103, 206, 262, 354
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	124, 279, 352, 407
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	120, 190
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 236, 245
HpyF3I	CTNAG	2 cut(s)	66, 240
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	165, 289
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	2 cut(s)	167, 291
MboI	GATC	2 cut(s)	165, 289
MboII	GAAGA	2 cut(s)	289, 325
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	424
MnlI	CCTC	5 cut(s)	23, 46, 234, 315, 328
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	4 cut(s)	27, 45, 84, 227
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	54, 236, 245
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	165, 289
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	3 cut(s)	115, 222, 302
NmeAIII	GCCGAG	2 cut(s)	90, 277
OliI	CACNNNNGTG	1 cut(s)	125
PaqCI	CACCTGC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	6 cut(s)	40, 43, 59, 62, 250, 287
Ppu21I	YACGTR	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	115, 222, 302
PspPI	GGNCC	2 cut(s)	220, 323
PspPPI	RGGWCCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	6 cut(s)	39, 42, 58, 61, 249, 286
Sau3AI	GATC	2 cut(s)	165, 289
Sau96I	GGNCC	2 cut(s)	220, 323
ScaI	AGTACT	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	100, 119, 125, 222, 339
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	9 cut(s)	39, 57, 60, 93, 230, 249, 285, 309, 369
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	1 cut(s)	125
TasI	AATT	1 cut(s)	424
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	5 cut(s)	41, 60, 63, 251, 288
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseI	GCWGC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	220
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.