Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

16238074 .. 16239662

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1081600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTTGATAAATTAGTCAAAGAGATGGGGAAGGATGCGAAGGCAGGAGGAAAGGGGAAGGGAAAGGCGGCGGGCGGCAGCGACGACGGTGGAGGAAAAGGAAAAGGAAAAGGAAAATCCGGGAAGGCCGCCGATGGGCTAGGCACCTGCACTTATGTGAAAGCAAGGCACATACTTTGTGAAAAGCAGGGCAAAATCAACGAAGCCTACAAGAAGCTGCAGGACGGATGGCTCGAAAACGGCGACAAAGTCCCTCAGCCGGAGTTCGCGAAACTGGCGGCGGAGTACTCCGAGTGCCCGTCGGGGAAGAAAGGCGGGGATCTTGGGTGGTTCCCTCGCGGGAAGATGGCAGGACCTTTTCAGGATGTTGCTTTCGCTACTCCAATTGGGGCAACCAGTGCGCCTTTCAAATCGACGCATGGTTACCACATTATCTTGTGCGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

153

Amino Acids

15.92

Weight (kDa)

9.44

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	52 - 146	9.3e-17	PPIC-type PPIASE domain
Rotamase	PF00639	57 - 148	2e-18	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	2 cut(s)	269, 339
AciI	CCGC	8 cut(s)	68, 71, 75, 129, 278, 281, 315, 339
AclWI	GGATC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	135, 259
AgsI	TTSAA	1 cut(s)	409
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	78, 217
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	90, 204
BccI	CCATC	4 cut(s)	19, 128, 222, 340
BceAI	ACGGC	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	155
BisI	GCNGC	6 cut(s)	69, 76, 79, 129, 218, 279
BlsI	GCNGC	6 cut(s)	70, 77, 80, 130, 219, 280
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	145, 332
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 259
Bse1I	ACTGG	2 cut(s)	279, 396
BseGI	GGATG	3 cut(s)	40, 233, 370
BseLI	CCNNNNNNNGG	2 cut(s)	135, 259
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	279, 396
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	90, 204
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	269, 339
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	120, 260
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	135, 259
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	319
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	8 cut(s)	68, 71, 75, 129, 278, 281, 315, 339
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	269, 339
BspLI	GGNNCC	2 cut(s)	145, 332
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	279, 396
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	40, 233, 370
BstFNI	CGCG	2 cut(s)	269, 339
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 398
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	2 cut(s)	269, 339
BstV1I	GCAGC	2 cut(s)	90, 204
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	40, 233, 370
BtsIMutI	CAGTG	1 cut(s)	403
BtuMI	TCGCGA	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	6 cut(s)	128, 139, 206, 217, 232, 259
CviKI_1	RGCY	6 cut(s)	128, 139, 206, 217, 232, 259
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	422
FaeI	CATG	1 cut(s)	422
FaiI	YATR	3 cut(s)	156, 173, 420
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	1 cut(s)	418
FauI	CCCGC	3 cut(s)	64, 308, 332
Fnu4HI	GCNGC	6 cut(s)	69, 76, 79, 129, 218, 279
FokI	GGATG	3 cut(s)	47, 240, 377
Fsp4HI	GCNGC	6 cut(s)	69, 76, 79, 129, 218, 279
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	6 cut(s)	69, 76, 79, 129, 218, 279
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	120, 260
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HpaII	CCGG	2 cut(s)	120, 260
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	2 cut(s)	268, 362
Hpy99I	CGWCG	4 cut(s)	86, 89, 304, 418
HpyAV	CCTTC	5 cut(s)	25, 34, 52, 118, 437
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	150, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 398
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	319
Lsp1109I	GCAGC	2 cut(s)	90, 204
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	319, 355
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	3 cut(s)	11, 384, 454
MnlI	CCTC	4 cut(s)	41, 86, 264, 345
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	2 cut(s)	120, 260
MspR9I	CCNGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	269, 339
MwoI	GCNNNNNNNGC	2 cut(s)	275, 398
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	2 cut(s)	145, 332
NruI	TCGCGA	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	155
PaqCI	CACCTGC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	6 cut(s)	70, 77, 80, 130, 219, 280
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	145, 332
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	319
PsyI	GACNNNGTC	1 cut(s)	248
RruI	TCGCGA	1 cut(s)	269
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	6 cut(s)	69, 76, 79, 129, 218, 279
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	353
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	3 cut(s)	149, 219, 358
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	11, 384, 454
SsiI	CCGC	8 cut(s)	68, 71, 75, 129, 278, 281, 315, 339
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	234, 413
TasI	AATT	3 cut(s)	11, 384, 454
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	4 cut(s)	71, 78, 131, 281
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	78, 217
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	353
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.