Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Forward (+)

5887408 .. 5889095

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006280

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGGCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGTACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTCGCGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

147

Amino Acids

14.88

Weight (kDa)

9.5

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	46 - 140	6.4e-17	PPIC-type PPIASE domain
Rotamase	PF00639	78 - 142	5.6e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	267, 340
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	127, 269
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	344, 391
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	18, 258, 334, 351
ApeKI	GCWGC	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	232, 335
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	110, 322
BceAI	ACGGC	2 cut(s)	223, 238
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	8 cut(s)	45, 48, 55, 58, 70, 73, 261, 298
BlsI	GCNGC	8 cut(s)	46, 49, 56, 59, 71, 74, 262, 299
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	232, 335
BmiI	GGNNCC	3 cut(s)	127, 234, 314
BsaAI	YACGTR	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	20, 260, 336, 353
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	21, 51, 96, 239
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	4 cut(s)	20, 260, 336, 353
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	177, 301
BspANI	GGCC	4 cut(s)	20, 260, 336, 353
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	127, 234, 314
BspMI	ACCTGC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	177, 301
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	52, 212, 334
BstDEI	CTNAG	2 cut(s)	78, 252
BstEII	GGTNACC	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	2 cut(s)	180, 304
BstMBI	GATC	2 cut(s)	177, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
BstPI	GGTNACC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	20, 260, 336, 353
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	52, 212, 334
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	232, 335
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	126, 268
CviAII	CATG	1 cut(s)	401
CviQI	GTAC	2 cut(s)	126, 268
DdeI	CTNAG	2 cut(s)	78, 252
DpnI	GATC	2 cut(s)	179, 303
DpnII	GATC	2 cut(s)	177, 301
EaeI	YGGCCR	1 cut(s)	258
EciI	GGCGGA	2 cut(s)	120, 257
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	267, 340
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	404
FaiI	YATR	3 cut(s)	138, 155, 402
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	8 cut(s)	45, 48, 55, 58, 70, 73, 261, 298
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	8 cut(s)	45, 48, 55, 58, 70, 73, 261, 298
GluI	GCNGC	8 cut(s)	45, 48, 55, 58, 70, 73, 261, 298
HaeIII	GGCC	4 cut(s)	20, 260, 336, 353
HapII	CCGG	4 cut(s)	21, 51, 96, 239
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	404
HpaII	CCGG	4 cut(s)	21, 51, 96, 239
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	4 cut(s)	115, 218, 274, 366
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	136, 291, 364, 419
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	132, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
HpyF3I	CTNAG	2 cut(s)	78, 252
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	177, 301
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	179, 303
MboI	GATC	2 cut(s)	177, 301
MboII	GAAGA	2 cut(s)	301, 337
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	436
MnlI	CCTC	5 cut(s)	17, 58, 246, 327, 340
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	4 cut(s)	21, 51, 96, 239
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	177, 301
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	127, 234, 314
NmeAIII	GCCGAG	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	8 cut(s)	46, 49, 56, 59, 71, 74, 262, 299
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	127, 234, 314
PspPI	GGNCC	2 cut(s)	232, 335
PspPPI	RGGWCCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	127, 269
RsaNI	GTAC	2 cut(s)	126, 268
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	8 cut(s)	45, 48, 55, 58, 70, 73, 261, 298
Sau3AI	GATC	2 cut(s)	177, 301
Sau96I	GGNCC	2 cut(s)	232, 335
ScaI	AGTACT	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	112, 131, 137, 234, 351
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	137
TasI	AATT	1 cut(s)	436
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	7 cut(s)	47, 57, 60, 72, 75, 263, 300
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	232
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.