Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

60423797 .. 60425494

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCACAGCCAGCGCCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTCGCGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

146

Amino Acids

14.95

Weight (kDa)

9.5

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	46 - 140	6.4e-17	PPIC-type PPIASE domain
Rotamase	PF00639	78 - 142	5.6e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	321
AciI	CCGC	8 cut(s)	69, 72, 105, 242, 261, 297, 321, 381
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	267, 340
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	344, 391
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	18, 258, 334, 351
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	232, 335
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	123
BccI	CCATC	2 cut(s)	110, 322
BceAI	ACGGC	2 cut(s)	223, 238
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	4 cut(s)	70, 73, 261, 298
BlsI	GCNGC	4 cut(s)	71, 74, 262, 299
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	232, 335
BmiI	GGNNCC	3 cut(s)	127, 234, 314
BsaAI	YACGTR	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	20, 260, 336, 353
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	21, 57, 96, 239
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	4 cut(s)	20, 260, 336, 353
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	177, 301
BspACI	CCGC	8 cut(s)	69, 72, 105, 242, 261, 297, 321, 381
BspANI	GGCC	4 cut(s)	20, 260, 336, 353
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	127, 234, 314
BspMI	ACCTGC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	177, 301
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	52, 58, 212, 334
BstDEI	CTNAG	2 cut(s)	78, 252
BstEII	GGTNACC	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	180, 304
BstMBI	GATC	2 cut(s)	177, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
BstPI	GGTNACC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	20, 260, 336, 353
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	4 cut(s)	52, 58, 212, 334
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	232, 335
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	401
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	78, 252
DpnI	GATC	2 cut(s)	179, 303
DpnII	GATC	2 cut(s)	177, 301
EaeI	YGGCCR	1 cut(s)	258
EciI	GGCGGA	2 cut(s)	120, 257
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	267, 340
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	404
FaiI	YATR	3 cut(s)	138, 155, 402
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	1 cut(s)	400
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	70, 73, 261, 298
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	4 cut(s)	70, 73, 261, 298
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	4 cut(s)	70, 73, 261, 298
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	4 cut(s)	20, 260, 336, 353
HapII	CCGG	4 cut(s)	21, 57, 96, 239
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	4 cut(s)	21, 57, 96, 239
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	4 cut(s)	115, 218, 274, 366
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	136, 291, 364, 419
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	132, 202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
HpyF3I	CTNAG	2 cut(s)	78, 252
HpySE526I	ACGT	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	177, 301
LmnI	GCTCC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	179, 303
MboI	GATC	2 cut(s)	177, 301
MboII	GAAGA	2 cut(s)	301, 337
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	436
MnlI	CCTC	5 cut(s)	17, 58, 246, 327, 340
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	56
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	4 cut(s)	21, 57, 96, 239
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	66, 248, 257
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	177, 301
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	3 cut(s)	127, 234, 314
NmeAIII	GCCGAG	2 cut(s)	102, 289
OliI	CACNNNNGTG	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	71, 74, 262, 299
Ppu21I	YACGTR	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	127, 234, 314
PspPI	GGNCC	2 cut(s)	232, 335
PspPPI	RGGWCCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	4 cut(s)	70, 73, 261, 298
Sau3AI	GATC	2 cut(s)	177, 301
Sau96I	GGNCC	2 cut(s)	232, 335
ScaI	AGTACT	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	112, 131, 137, 234, 351
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	8 cut(s)	69, 72, 105, 242, 261, 297, 321, 381
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	137
TasI	AATT	1 cut(s)	436
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	4 cut(s)	72, 75, 263, 300
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	232
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.