Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Forward (+)

28270134 .. 28271456

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGAAGGACGCGAAGGCAGGAGGCAAAGGGAAGGGAAAGCAAGCGGCGGGTGGCAGCGACGAGGCTGGCTCTAAAGGAAAGGGAAAATCTGGGAAGTCTTCTGATGGGCTGGGCACTTGCACTTACGTGAAAGCAAGGCATGTACTTTGTGAAAAGCAAGGGAAAATCAACGAAGCCTACAAGAAGTTGCAGGATGGTTGGCTTGAAAATGGCGACAAAGTGCCTCCTGCTGAGTTCGCGAAGGTAGCAGCCGAGTACTCGGAGTGCCCATCTGGGAAGAAAGGTGGCGATCTTGGGTGGTTCCCTCGTGGCAAGATGGCAGGCCCTTTTCAAGAGGTGGCTTTTGCTACCCCAATTGGGGCTACCAGTGCGCCTTTCAAATCCACGCATGGCTACCATATTATCTTGTGCGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

144

Amino Acids

14.89

Weight (kDa)

9.41

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 242
AciI	CCGC	2 cut(s)	47, 50
AfaI	GTAC	2 cut(s)	147, 260
AfiI	CCNNNNNNNGG	2 cut(s)	360, 361
AgsI	TTSAA	3 cut(s)	209, 335, 382
AleI	CACNNNNGTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	2 cut(s)	57, 251
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	326
BaeGI	GKGCMC	2 cut(s)	119, 272
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	69, 263
BccI	CCATC	4 cut(s)	101, 191, 280, 313
BisI	GCNGC	3 cut(s)	48, 58, 252
BlsI	GCNGC	3 cut(s)	49, 59, 253
BmcAI	AGTACT	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BsaAI	YACGTR	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 361
Bse1I	ACTGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	360, 361
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	369
BseSI	GKGCMC	2 cut(s)	119, 272
BseXI	GCAGC	2 cut(s)	69, 263
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	14, 242
BshFI	GGCC	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	360, 361
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	119, 272
Bsp143I	GATC	1 cut(s)	292
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	2 cut(s)	47, 50
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	14, 242
BspLI	GGNNCC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	45, 70, 325
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	14, 242
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 248, 371
BstNSI	RCATGY	1 cut(s)	146
BstSLI	GKGCMC	2 cut(s)	119, 272
BstUI	CGCG	2 cut(s)	14, 242
BstV1I	GCAGC	2 cut(s)	69, 263
BstV2I	GAAGAC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	376
BtuMI	TCGCGA	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	45, 70, 325
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	146, 259
CviAII	CATG	2 cut(s)	143, 392
CviQI	GTAC	2 cut(s)	146, 259
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	326
FaeI	CATG	2 cut(s)	146, 395
FaiI	YATR	3 cut(s)	144, 393, 402
FatI	CATG	2 cut(s)	142, 391
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	48, 58, 252
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	48, 58, 252
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	3 cut(s)	48, 58, 252
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	327
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	2 cut(s)	146, 395
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
Hpy188I	TCNGA	2 cut(s)	106, 265
Hpy188III	TCNNGA	2 cut(s)	241, 335
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	10, 28, 238, 410
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	123, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 248, 371
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	146, 395
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	9 cut(s)	6, 54, 78, 98, 179, 243, 261, 309, 382
Lsp1109I	GCAGC	2 cut(s)	69, 263
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	93, 292
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	119, 272
MluCI	AATT	2 cut(s)	357, 427
MnlI	CCTC	5 cut(s)	17, 58, 237, 318, 331
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	14, 242
MwoI	GCNNNNNNNGC	3 cut(s)	239, 248, 371
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	146, 395
NlaIV	GGNNCC	1 cut(s)	305
NmeAIII	GCCGAG	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	49, 59, 253
Ppu21I	YACGTR	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	326
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	2 cut(s)	147, 260
RsaNI	GTAC	2 cut(s)	146, 259
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	3 cut(s)	48, 58, 252
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	119, 272
SetI	ASST	4 cut(s)	132, 249, 289, 342
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	357, 427
SsiI	CCGC	2 cut(s)	47, 50
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	357, 427
TatI	WGTACW	2 cut(s)	145, 258
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	57, 251
TspRI	CASTG	1 cut(s)	376
XceI	RCATGY	1 cut(s)	146
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.