Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

67583878 .. 67586130

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTCGCGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

144

Amino Acids

14.76

Weight (kDa)

9.5

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	44 - 138	6.2e-17	PPIC-type PPIASE domain
Rotamase	PF00639	76 - 140	5.4e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	315
AciI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	261, 334
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	2 cut(s)	338, 385
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	4 cut(s)	18, 252, 328, 345
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	226, 329
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	104, 316
BceAI	ACGGC	2 cut(s)	217, 232
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
BlsI	GCNGC	6 cut(s)	46, 49, 65, 68, 256, 293
BmcAI	AGTACT	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	226, 329
BmiI	GGNNCC	3 cut(s)	121, 228, 308
BsaAI	YACGTR	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	20, 254, 330, 347
BshNI	GGYRCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	21, 51, 90, 233
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	20, 254, 330, 347
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	171, 295
BspACI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
BspANI	GGCC	4 cut(s)	20, 254, 330, 347
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	121, 228, 308
BspMI	ACCTGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	171, 295
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	52, 206, 328
BstDEI	CTNAG	2 cut(s)	72, 246
BstEII	GGTNACC	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	174, 298
BstMBI	GATC	2 cut(s)	171, 295
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
BstPI	GGTNACC	1 cut(s)	398
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	20, 254, 330, 347
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	52, 206, 328
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	226, 329
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	72, 246
DpnI	GATC	2 cut(s)	173, 297
DpnII	GATC	2 cut(s)	171, 295
EaeI	YGGCCR	1 cut(s)	252
EciI	GGCGGA	2 cut(s)	114, 251
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	261, 334
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	398
FaiI	YATR	3 cut(s)	132, 149, 396
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	308
Fnu4HI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
GluI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
HaeIII	GGCC	4 cut(s)	20, 254, 330, 347
HapII	CCGG	4 cut(s)	21, 51, 90, 233
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	398
HpaII	CCGG	4 cut(s)	21, 51, 90, 233
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	4 cut(s)	109, 212, 268, 360
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	130, 285, 358, 413
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	126, 196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
HpyF3I	CTNAG	2 cut(s)	72, 246
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	171, 295
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	173, 297
MboI	GATC	2 cut(s)	171, 295
MboII	GAAGA	2 cut(s)	295, 331
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	430
MnlI	CCTC	5 cut(s)	17, 52, 240, 321, 334
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	433
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	4 cut(s)	21, 51, 90, 233
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	60, 242, 251
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	171, 295
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	121, 228, 308
NmeAIII	GCCGAG	2 cut(s)	96, 283
OliI	CACNNNNGTG	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	6 cut(s)	46, 49, 65, 68, 256, 293
Ppu21I	YACGTR	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	121, 228, 308
PspPI	GGNCC	2 cut(s)	226, 329
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	6 cut(s)	45, 48, 64, 67, 255, 292
Sau3AI	GATC	2 cut(s)	171, 295
Sau96I	GGNCC	2 cut(s)	226, 329
ScaI	AGTACT	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	106, 125, 131, 228, 345
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	9 cut(s)	45, 63, 66, 99, 236, 255, 291, 315, 375
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	131
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	5 cut(s)	47, 66, 69, 257, 294
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TseI	GCWGC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	226
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.