Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

30336293 .. 30338040

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30970.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGGAAGGGAAAAGCCGCAGCCGGCGGCGGCGGCGACGAAGGCGGAGGCTCAAAAGGAAAAGGAAAGTCCGGAAAGGGCGGCGCTTCCGATGGGCTCGGTACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAGGCCTACAAGAAGTTGCAGGACGGTTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGCTGGCTGCAGAGTACTCCGAGTGTCCGTCCGGGAAGAAAGGCGGCGATCTCGGGTGGTTCCCTAGGGGGAAGATGGCTGGCCCTTTTCAAGAGGTGGCCTTCAGCACCCCGATTGGGGCTACCAGTGCTGCTTTCAAGTCCACGCATGGTTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

148

Amino Acids

14.95

Weight (kDa)

9.5

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	47 - 141	6.8e-17	PPIC-type PPIASE domain
Rotamase	PF00639	80 - 143	9.1e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
Acc65I	GGTACC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	8 cut(s)	45, 54, 57, 60, 72, 108, 245, 300
AcuI	CTGAAG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	130, 272
AfiI	CCNNNNNNNGG	3 cut(s)	244, 372, 373
AgsI	TTSAA	2 cut(s)	347, 394
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	308
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	4 cut(s)	18, 189, 337, 354
ApeKI	GCWGC	3 cut(s)	47, 263, 386
Asp718I	GGTACC	1 cut(s)	128
AspA2I	CCTAGG	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	235, 338
AsuC2I	CCSGG	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	235
AvrII	CCTAGG	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	59, 250, 373
BccI	CCATC	2 cut(s)	113, 325
BceAI	ACGGC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	289
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	9 cut(s)	45, 48, 55, 58, 61, 109, 264, 301, 387
BlnI	CCTAGG	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	9 cut(s)	46, 49, 56, 59, 62, 110, 265, 302, 388
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	235, 338
BmiI	GGNNCC	3 cut(s)	130, 237, 317
BmrFI	CCNGG	1 cut(s)	289
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	15, 320
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 372, 373
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	15, 320
BseLI	CCNNNNNNNGG	3 cut(s)	244, 372, 373
BseNI	ACTGG	1 cut(s)	381
BseXI	GCAGC	3 cut(s)	59, 250, 373
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	20, 191, 339, 356
BshNI	GGYRCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	5 cut(s)	21, 51, 99, 242, 288
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	244, 372, 373
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	20, 191, 339, 356
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	180, 304
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	8 cut(s)	45, 54, 57, 60, 72, 108, 245, 300
BspANI	GGCC	4 cut(s)	20, 191, 339, 356
BspEI	TCCGGA	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	130, 237, 317
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	15, 320
BssMI	GATC	2 cut(s)	180, 304
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	15, 320
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	3 cut(s)	52, 261, 337
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	407
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	183, 307
BstMBI	GATC	2 cut(s)	180, 304
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 69, 251, 260, 383
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	59, 250, 373
BsuRI	GGCC	4 cut(s)	20, 191, 339, 356
BtsIMutI	CAGTG	1 cut(s)	388
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	52, 261, 337
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	235, 338
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	129, 271
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	2 cut(s)	129, 271
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	182, 306
DpnII	GATC	2 cut(s)	180, 304
EciI	GGCGGA	2 cut(s)	87, 260
Eco130I	CCWWGG	2 cut(s)	15, 320
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	15, 320
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	15, 320
FaeI	CATG	1 cut(s)	407
FaiI	YATR	3 cut(s)	141, 158, 405
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	9 cut(s)	45, 48, 55, 58, 61, 109, 264, 301, 387
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	9 cut(s)	45, 48, 55, 58, 61, 109, 264, 301, 387
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	9 cut(s)	45, 48, 55, 58, 61, 109, 264, 301, 387
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	20, 191, 339, 356
HapII	CCGG	5 cut(s)	21, 51, 99, 242, 288
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HpaII	CCGG	5 cut(s)	21, 51, 99, 242, 288
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	3 cut(s)	118, 221, 277
Hpy188III	TCNNGA	2 cut(s)	99, 347
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	5 cut(s)	28, 62, 139, 367, 422
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	135, 205, 266
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 69, 251, 260, 383
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	98
KpnI	GGTACC	1 cut(s)	132
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	180, 304
Lsp1109I	GCAGC	3 cut(s)	59, 250, 373
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	2 cut(s)	182, 306
MboI	GATC	2 cut(s)	180, 304
MboII	GAAGA	2 cut(s)	304, 340
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	439
MnlI	CCTC	5 cut(s)	17, 68, 181, 249, 343
MroI	TCCGGA	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	5 cut(s)	21, 51, 99, 242, 288
MspR9I	CCNGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	5 cut(s)	60, 69, 251, 260, 383
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	180, 304
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	3 cut(s)	130, 237, 317
OliI	CACNNNNGTG	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	9 cut(s)	46, 49, 56, 59, 62, 110, 265, 302, 388
Ppu21I	YACGTR	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	130, 237, 317
PspPI	GGNCC	2 cut(s)	235, 338
PspPPI	RGGWCCY	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	2 cut(s)	130, 272
RsaNI	GTAC	2 cut(s)	129, 271
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	9 cut(s)	45, 48, 55, 58, 61, 109, 264, 301, 387
Sau3AI	GATC	2 cut(s)	180, 304
Sau96I	GGNCC	2 cut(s)	235, 338
ScaI	AGTACT	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	134, 140, 237, 261, 354
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	439
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	8 cut(s)	45, 54, 57, 60, 72, 108, 245, 300
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	15, 320
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	140
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	6 cut(s)	47, 57, 60, 63, 111, 303
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	3 cut(s)	47, 263, 386
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.