Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013117

Physical Location & Seq

Genomic Coordinates Reverse (-)

53530039 .. 53531527

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG380300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAAGGGAAAAGCCGCAGCCGGCGCCGGCGGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTCCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACATACTTTGTGAGAAGCAGGGCAAGATCAACGAAGCCTACAAGAAGTTGCAGGACGGCTGGCTCGGAAACGGCGATAAGGTCCCTCCGGCGGAGTTCGCTAAGTTGGCCGCCGAGTACTCCGAGTGTCCTTCAGGGAAGAAAGGCGGCGACCTCGGGTGGTTCCCTCGCGGGAAGATGGCCGGCCCTTTTCAAGAGGTGGCCTTCAGCACTCCGATTGGGGCTACCAGCGGTGCTTTCAAGTCCACGCATGGCTACCACATTATCTTGTGTGAAGGCAGAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003681 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005819 GO:0005856 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015630 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rotamase Rotamase_3

Protein Analysis

147

Amino Acids

14.95

Weight (kDa)

9.5

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rotamase_3	PF13616	47 - 141	6.7e-17	PPIC-type PPIASE domain
Rotamase	PF00639	80 - 143	5.7e-17	PPIC-type PPIASE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26550
fragaria_vesca	FvH4_4g30970 FvH4_4g30970 FvH4_4g30970 FvH4_4g30970
malus_domestica	MD00G1081600.v1.1
prunus_persica	Prupe.1G278400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439331
rosa_laevigata	RLG00000006280
rosa_multiflora	Rmu_ssc0000171.1_g000011
rosa_roxburghii	Rroxscaffold_3G00219760 Rroxscaffold_5G00380270
rosa_rugosa	Rorug04G0317600
rosa_samantha	Rh4AG368300 Rh4BG380300 Rh4CG394700 Rh4DG374600
rosa_wichuraiana	Rw0G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	53, 128
AccII	CGCG	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	261, 333
AcuI	CTGAAG	2 cut(s)	270, 343
AcyI	GRCGYC	2 cut(s)	12, 54
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	347, 394
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	5 cut(s)	18, 261, 333, 337, 354
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	235, 338
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	53, 128
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	2 cut(s)	113, 325
BceAI	ACGGC	2 cut(s)	226, 241
BfoI	RGCGCY	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
BlsI	GCNGC	7 cut(s)	46, 49, 62, 74, 77, 265, 302
BmcAI	AGTACT	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	235, 338
BmiI	GGNNCC	4 cut(s)	55, 130, 237, 317
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	12, 54
BsaJI	CCNNGG	2 cut(s)	15, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	3 cut(s)	50, 56, 335
BseDI	CCNNGG	2 cut(s)	15, 307
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BshNI	GGYRCC	2 cut(s)	53, 128
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	55, 130, 237, 317
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	53, 128
BsrFI	RCCGGY	3 cut(s)	50, 56, 335
BssAI	RCCGGY	3 cut(s)	50, 56, 335
BssECI	CCNNGG	2 cut(s)	15, 307
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	12, 54
BssT1I	CCWWGG	1 cut(s)	15
BstACI	GRCGYC	2 cut(s)	12, 54
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	52, 58, 215, 337
BstDEI	CTNAG	2 cut(s)	81, 255
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	5 cut(s)	20, 263, 335, 339, 356
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	4 cut(s)	52, 58, 215, 337
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	3 cut(s)	50, 56, 335
Cfr13I	GGNCC	2 cut(s)	235, 338
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	81, 255
DinI	GGCGCC	1 cut(s)	55
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	261, 333
EciI	GGCGGA	2 cut(s)	123, 260
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	270, 343
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	55
EheI	GGCGCC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	407
FaiI	YATR	3 cut(s)	141, 158, 405
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
FriOI	GRGCYC	1 cut(s)	126
FseI	GGCCGGCC	1 cut(s)	339
Fsp4HI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	5 cut(s)	20, 263, 335, 339, 356
HapII	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	56
Hin1I	GRCGYC	2 cut(s)	12, 54
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	4 cut(s)	118, 221, 277, 369
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	139, 294, 367, 422
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	135, 205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
HpyF3I	CTNAG	2 cut(s)	81, 255
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	2 cut(s)	12, 54
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	54
KasI	GGCGCC	1 cut(s)	53
KroI	GCCGGC	3 cut(s)	50, 56, 335
KroNI	GCCGGC	3 cut(s)	52, 58, 337
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	137
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	304, 340
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	439
Mly113I	GGCGCC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	17, 61, 249, 317, 330, 343
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	3 cut(s)	50, 56, 335
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	6 cut(s)	21, 51, 57, 99, 242, 336
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	5 cut(s)	53, 60, 69, 251, 260
NaeI	GCCGGC	3 cut(s)	52, 58, 337
NarI	GGCGCC	1 cut(s)	54
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	3 cut(s)	50, 56, 335
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	4 cut(s)	55, 130, 237, 317
NmeAIII	GCCGAG	2 cut(s)	105, 292
OliI	CACNNNNGTG	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	3 cut(s)	52, 58, 337
PkrI	GCNGC	7 cut(s)	46, 49, 62, 74, 77, 265, 302
PluTI	GGCGCC	1 cut(s)	57
Ppu21I	YACGTR	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	4 cut(s)	55, 130, 237, 317
PspPI	GGNCC	2 cut(s)	235, 338
PspPPI	RGGWCCY	1 cut(s)	235
RigI	GGCCGGCC	1 cut(s)	339
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	7 cut(s)	45, 48, 61, 73, 76, 264, 301
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	235, 338
ScaI	AGTACT	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	6 cut(s)	115, 134, 140, 237, 309, 354
SfoI	GGCGCC	1 cut(s)	55
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	439
SspDI	GGCGCC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	140
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	6 cut(s)	47, 63, 75, 78, 266, 303
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseI	GCWGC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.