AT1G26580
MYB Family

ELM2 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014264
Physical Location & Seq
Forward (+)
9184567 .. 9187578
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26580.2

Sequence Viewer

Length: 1482 bp
ATGGGATTCAAACGCCCTTTTGAAGATGAGAAGTTTCATGAGCTCCCACTCAAACATTCCAGACAACTTGACTATAACGATAAGTCTACTCAGTTTGAAGAAGTTAGTCCTCACCATGCTGGTTTCCAGAAAACTGTTGCCACGGTGAATGAGGGAAATCTTTGTAAGTCACAAGGCGGTGAGTCATCTGAAGGTGATATGTTTGATGAAGAGTCCAATTATGTTTACCCTGGTCATGACATGGATGATACTTTTACATGGGATACACAAGGTTGTGGTGGAAGAGATGCAACTTACTCTCCCCATTCTGGAAAGTATTTTGAGCTAGATATACCTCCAAGAGTATTTGCTCCTGTTGAGACTTTCTATTATTTACTCTTGGATCAACGTGCCAAAAAGCAAGTGCCCATTGGACCAGGTCATCAAGCCGAGATTCCTGAATGGGAAGGCAGTCAGACTGGGAACATAGAAACCTCAGGCATGTCAGTTCAAAATCACATTAGTGGATGTGCTGATGGTGAGAAGCTGTTTGGTACATCTGTTATTCCCATGCCTGGTTTGACTACAGTTGCACATATTGATGACATAGTAGGGAAGGGTAGAAAGTTTTGTGTATGCCGGGACAGGGATTCTGTCAGGTGTGTGTGCCAGCACATTAAAGAAGCTAGAGAAGAATTAGTTAAGACGTTTGGAAATGAGACATTCAAAGAACTGGGTTTATGTGAGATGGGGGAAAAAGGTGCACTGAAGTGGAGCGATGAAGATGCACAACTTTTTCATGAGGTTGTTTATTCCAATCCTGTAACATTGGGGCAGAATTTTTGGAGGCACTTGGAAGCTGCATTTTGTTCCCGAACTCAGAAAGAGATTGTTAGCTTCTACTTTAACGTATTTGTCCTCAGAAGGAGAGCCATCCAGAACAGAGCTTTTATATTGGACATTGATAGTGATGATGATGAATGGCATGGATGTTATGGAGGCTCTTCTGGTACTCGTTATGTAGAAGAAGATGAAGAAGACTCTGCAATCGAGTCTCCTCTTCATCAAGGGACTAAGAAAGTGTATCCACTCCATCATGAAGAAGGTGAAGAAGATGTTAGTCATAGCAGCAATGATGAAGATGATGATGATACTAAAGAAGGTGGCACTGGACTGTATGACGAGCACAAGATGAGTTCAACAGTTGAATACATGGATAGATTTTCTGGGAACAATGGAGAGAGATTGAACGTGGAAGATGACTCGTGCACTTCCTTTGAACTTGCACGTAATGCAGTCAACTGTGCAGAGAAAGATGAGACTGTTCCTGGAGAGCAGCAGAAGAAGTTGAAGGATTGTAATGATCCAATAGATACCAAAGTCTGGGATGCTTCGAGGTGTTTGAATGTTCCAACAAATGGCAAAGATCTTCAACCAACCCGGAGAATCATGGAGGAGATATTTGGTAATGGATGCTGGGAAAACAAGGCAAGAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

493

Amino Acids

55.79

Weight (kDa)

4.8

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1362, 1397
AccI GTMKAC 1 cut(s) 86
AciI CCGC 1 cut(s) 177
AclWI GGATC 2 cut(s) 390, 1337
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 2 cut(s) 210, 767
AfaI GTAC 2 cut(s) 535, 991
AfiI CCNNNNNNNGG 5 cut(s) 308, 554, 625, 1362, 1397
AjnI CCWGG 4 cut(s) 229, 415, 553, 1306
AleI CACNNNNGTG 2 cut(s) 501, 748
AluBI AGCT 7 cut(s) 43, 325, 526, 665, 839, 876, 926
AluI AGCT 7 cut(s) 43, 325, 526, 665, 839, 876, 926
Alw21I GWGCWC 4 cut(s) 45, 745, 1167, 1250
Alw26I GTCTC 4 cut(s) 353, 692, 1038, 1292
Alw44I GTGCAC 2 cut(s) 741, 1246
AlwI GGATC 2 cut(s) 390, 1337
ApaLI GTGCAC 2 cut(s) 741, 1246
ApeKI GCWGC 3 cut(s) 839, 1107, 1315
ApoI RAATTY 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 2 cut(s) 620, 1420
AsuHPI GGTGA 6 cut(s) 104, 157, 191, 206, 530, 1097
AvaII GGWCC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 475
BaeGI GKGCMC 3 cut(s) 408, 745, 1250
BaeI ACNNNNGTAYC 4 cut(s) 525, 558, 1344, 1377
BanII GRGCYC 1 cut(s) 45
BauI CACGAG 1 cut(s) 1243
BbsI GAAGAC 1 cut(s) 1023
Bbv12I GWGCWC 4 cut(s) 45, 745, 1167, 1250
BbvI GCAGC 3 cut(s) 826, 1119, 1327
BccI CCATC 4 cut(s) 509, 721, 920, 1080
BcgI CGANNNNNNTGC 2 cut(s) 746, 780
BciT130I CCWGG 4 cut(s) 231, 417, 555, 1308
BciVI GTATCC 2 cut(s) 256, 1074
BcnI CCSGG 2 cut(s) 620, 1420
BcoDI GTCTC 4 cut(s) 353, 692, 1038, 1292
BfaI CTAG 2 cut(s) 326, 666
BfmI CTRYAG 1 cut(s) 564
BfuI GTATCC 2 cut(s) 256, 1074
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 3 cut(s) 840, 1108, 1316
BlsI GCNGC 3 cut(s) 841, 1109, 1317
Bme1390I CCNGG 6 cut(s) 231, 417, 555, 620, 1308, 1420
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 6 cut(s) 231, 417, 555, 620, 1308, 1420
BmrI ACTGGG 2 cut(s) 468, 722
BmsI GCATC 4 cut(s) 277, 754, 1357, 1442
BmuI ACTGGG 2 cut(s) 468, 722
BpiI GAAGAC 1 cut(s) 1023
BpmI CTGGAG 1 cut(s) 1329
BpuMI CCSGG 2 cut(s) 620, 1420
BsaAI YACGTR 1 cut(s) 1268
BsaJI CCNNGG 2 cut(s) 141, 229
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 5 cut(s) 308, 554, 625, 1362, 1397
Bse1I ACTGG 3 cut(s) 463, 717, 1153
Bse21I CCTNAGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 1117
BseBI CCWGG 4 cut(s) 231, 417, 555, 1308
BseDI CCNNGG 2 cut(s) 141, 229
BseGI GGATG 6 cut(s) 250, 512, 912, 974, 1372, 1457
BseLI CCNNNNNNNGG 5 cut(s) 308, 554, 625, 1362, 1397
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 4 cut(s) 104, 489, 872, 913
BseNI ACTGG 3 cut(s) 463, 717, 1153
BseRI GAGGAG 2 cut(s) 1026, 1448
BseSI GKGCMC 3 cut(s) 408, 745, 1250
BseXI GCAGC 3 cut(s) 826, 1119, 1327
BseYI CCCAGC 1 cut(s) 1455
BsgI GTGCAG 1 cut(s) 1305
BsiHKAI GWGCWC 4 cut(s) 45, 745, 1167, 1250
BsiSI CCGG 2 cut(s) 619, 1420
BslFI GGGAC 2 cut(s) 635, 1063
BslI CCNNNNNNNGG 5 cut(s) 308, 554, 625, 1362, 1397
BsmAI GTCTC 4 cut(s) 353, 692, 1038, 1292
BsmFI GGGAC 2 cut(s) 635, 1063
Bsp1286I GDGCHC 5 cut(s) 45, 408, 745, 1167, 1250
Bsp143I GATC 3 cut(s) 382, 1342, 1405
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 4 cut(s) 103, 488, 871, 912
BspHI TCATGA 4 cut(s) 37, 235, 778, 1075
BspPI GGATC 2 cut(s) 390, 1337
BspQI GCTCTTC 1 cut(s) 988
BsrDI GCAATG 1 cut(s) 1117
BsrI ACTGG 3 cut(s) 463, 717, 1153
BssECI CCNNGG 2 cut(s) 141, 229
BssMI GATC 3 cut(s) 382, 1342, 1405
BssSI CACGAG 1 cut(s) 1243
Bst2BI CACGAG 1 cut(s) 1243
Bst2UI CCWGG 4 cut(s) 231, 417, 555, 1308
Bst4CI ACNGT 7 cut(s) 136, 145, 568, 1155, 1183, 1283, 1303
Bst6I CTCTTC 4 cut(s) 204, 277, 988, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1271
BstBAI YACGTR 1 cut(s) 1268
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 5 cut(s) 90, 475, 858, 899, 1053
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 6 cut(s) 250, 512, 912, 974, 1372, 1457
BstKTI GATC 3 cut(s) 385, 1345, 1408
BstMAI GTCTC 4 cut(s) 353, 692, 1038, 1292
BstMBI GATC 3 cut(s) 382, 1342, 1405
BstMWI GCNNNNNNNGC 1 cut(s) 1271
BstNI CCWGG 4 cut(s) 231, 417, 555, 1308
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 6 cut(s) 229, 415, 553, 618, 1306, 1418
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 3 cut(s) 408, 745, 1250
BstV1I GCAGC 3 cut(s) 826, 1119, 1327
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 1 cut(s) 1405
BstYI RGATCY 1 cut(s) 1405
Bsu36I CCTNAGG 1 cut(s) 475
BsuI GTATCC 2 cut(s) 256, 1074
BtgI CCRYGG 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 6 cut(s) 250, 512, 912, 974, 1372, 1457
BtsIMutI CAGTG 2 cut(s) 743, 1146
Cac8I GCNNGC 1 cut(s) 650
CciI TCATGA 4 cut(s) 37, 235, 778, 1075
Cfr13I GGNCC 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 415
Csp6I GTAC 2 cut(s) 534, 990
CviQI GTAC 2 cut(s) 534, 990
DdeI CTNAG 5 cut(s) 90, 475, 858, 899, 1053
DpnI GATC 3 cut(s) 384, 1344, 1407
DpnII GATC 3 cut(s) 382, 1342, 1405
Eam1104I CTCTTC 4 cut(s) 204, 277, 988, 1044
EarI CTCTTC 4 cut(s) 204, 277, 988, 1044
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 210, 767
Eco81I CCTNAGG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 4 cut(s) 229, 415, 553, 1306
EcoT38I GRGCYC 1 cut(s) 45
FaqI GGGAC 2 cut(s) 635, 1063
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 840, 1108, 1316
FokI GGATG 6 cut(s) 257, 519, 899, 981, 1379, 1464
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 3 cut(s) 840, 1108, 1316
FspBI CTAG 2 cut(s) 326, 666
GluI GCNGC 3 cut(s) 840, 1108, 1316
GsaI CCCAGC 1 cut(s) 1459
GsuI CTGGAG 1 cut(s) 1329
HapII CCGG 2 cut(s) 619, 1420
HincII GTYRAC 1 cut(s) 1279
HindII GTYRAC 1 cut(s) 1279
HinfI GANTC 9 cut(s) 6, 182, 212, 433, 629, 1019, 1031, 1241, 1425
HpaII CCGG 2 cut(s) 619, 1420
HphI GGTGA 6 cut(s) 104, 157, 191, 206, 530, 1097
Hpy166II GTNNAC 5 cut(s) 87, 226, 743, 1248, 1279
Hpy188I TCNGA 4 cut(s) 190, 456, 861, 902
Hpy8I GTNNAC 5 cut(s) 87, 226, 743, 1248, 1279
HpyAV CCTTC 7 cut(s) 185, 440, 589, 897, 1076, 1133, 1324
HpyCH4III ACNGT 7 cut(s) 136, 145, 568, 1155, 1183, 1283, 1303
HpyCH4IV ACGT 5 cut(s) 388, 686, 888, 1230, 1267
HpyF10VI GCNNNNNNNGC 1 cut(s) 1271
HpyF3I CTNAG 5 cut(s) 90, 475, 858, 899, 1053
HpySE526I ACGT 5 cut(s) 388, 686, 888, 1230, 1267
Kzo9I GATC 3 cut(s) 382, 1342, 1405
LguI GCTCTTC 1 cut(s) 988
LmnI GCTCC 3 cut(s) 48, 355, 753
Lsp1109I GCAGC 3 cut(s) 826, 1119, 1327
LweI GCATC 4 cut(s) 277, 754, 1357, 1442
MabI ACCWGGT 1 cut(s) 415
MaeI CTAG 2 cut(s) 326, 666
MaeII ACGT 5 cut(s) 388, 686, 888, 1230, 1267
MaeIII GTNAC 2 cut(s) 168, 802
MalI GATC 3 cut(s) 384, 1344, 1407
MboI GATC 3 cut(s) 382, 1342, 1405
MflI RGATCY 1 cut(s) 1405
MhlI GDGCHC 5 cut(s) 45, 408, 745, 1167, 1250
MluCI AATT 3 cut(s) 217, 674, 817
MlyI GAGTC 5 cut(s) 191, 221, 1013, 1040, 1235
MmeI TCCRAC 1 cut(s) 1415
MseI TTAA 3 cut(s) 657, 681, 885
MslI CAYNNNNRTG 3 cut(s) 501, 579, 748
MspI CCGG 2 cut(s) 619, 1420
MspR9I CCNGG 6 cut(s) 231, 417, 555, 620, 1308, 1420
MvaI CCWGG 4 cut(s) 231, 417, 555, 1308
MwoI GCNNNNNNNGC 1 cut(s) 1271
NciI CCSGG 2 cut(s) 620, 1420
NdeII GATC 3 cut(s) 382, 1342, 1405
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 168
NspI RCATGY 1 cut(s) 484
OliI CACNNNNGTG 2 cut(s) 501, 748
PagI TCATGA 4 cut(s) 37, 235, 778, 1075
PciSI GCTCTTC 1 cut(s) 988
PfeI GAWTC 4 cut(s) 6, 433, 629, 1425
PflFI GACNNNGTC 1 cut(s) 417
PflMI CCANNNNNTGG 2 cut(s) 1362, 1397
PfoI TCCNGGA 1 cut(s) 1306
PkrI GCNGC 3 cut(s) 841, 1109, 1317
PleI GAGTC 5 cut(s) 190, 220, 1013, 1039, 1235
PpsI GAGTC 5 cut(s) 190, 220, 1013, 1039, 1235
Ppu21I YACGTR 1 cut(s) 1268
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 4 cut(s) 229, 415, 553, 1306
PspFI CCCAGC 1 cut(s) 1455
PspGI CCWGG 4 cut(s) 229, 415, 553, 1306
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 1405
PsyI GACNNNGTC 1 cut(s) 417
RsaI GTAC 2 cut(s) 535, 991
RsaNI GTAC 2 cut(s) 534, 990
RseI CAYNNNNRTG 3 cut(s) 501, 579, 748
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 988
SaqAI TTAA 3 cut(s) 657, 681, 885
SatI GCNGC 3 cut(s) 840, 1108, 1316
Sau3AI GATC 3 cut(s) 382, 1342, 1405
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 5 cut(s) 191, 221, 1013, 1040, 1235
ScrFI CCNGG 6 cut(s) 231, 417, 555, 620, 1308, 1420
SduI GDGCHC 5 cut(s) 45, 408, 745, 1167, 1250
SexAI ACCWGGT 1 cut(s) 415
SfaNI GCATC 4 cut(s) 277, 754, 1357, 1442
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 3 cut(s) 501, 579, 748
Sse9I AATT 3 cut(s) 217, 674, 817
SsiI CCGC 1 cut(s) 177
SspMI CTAG 2 cut(s) 326, 666
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 6 cut(s) 229, 415, 553, 618, 1306, 1418
TaaI ACNGT 7 cut(s) 136, 145, 568, 1155, 1183, 1283, 1303
TaiI ACGT 5 cut(s) 391, 689, 891, 1233, 1270
TaqI TCGA 2 cut(s) 1029, 1373
TasI AATT 3 cut(s) 217, 674, 817
TfiI GAWTC 4 cut(s) 6, 433, 629, 1425
Tru1I TTAA 3 cut(s) 657, 681, 885
Tru9I TTAA 3 cut(s) 657, 681, 885
TscAI CASTG 2 cut(s) 750, 1153
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 3 cut(s) 839, 1107, 1315
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 9 cut(s) 26, 222, 767, 774, 972, 1026, 1031, 1092, 1131
TspRI CASTG 2 cut(s) 750, 1153
Tth111I GACNNNGTC 1 cut(s) 417
Van91I CCANNNNNTGG 2 cut(s) 1362, 1397
VneI GTGCAC 2 cut(s) 741, 1246
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 817
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 2 cut(s) 326, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.