Rroxscaffold_5G00379620
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014264
Physical Location & Seq
Forward (+)
59907171 .. 59910160
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379620.1

Sequence Viewer

Length: 1596 bp
ATGGGATTTAAAAGGCCCTTTGATAATGTGGACTTCCAGGAGCTTCCTTATAAGCATTCAAGGCAGCTTGATTCCAGTGATAAGCGCTCTCCATTTTCTGATGTTGTTTCTTGTTATAGTGCACCCGAAAAACCATATGTTTCAGGTGAGGATGGGGATGCCCTTTGTAAAACTCAGTGGTTTGAGGTACTTGAAAAGTATAATGTTGGTAATGATTCAACAGCTGTCAATAAAGGTTGTGTGATTAATGCTACCTCTGCATTGGTCACCAGCAGTTGTGGTGAAGAAGACATTGGTTCTGCAGAGTATTTTGAATATGACTGCCCAAGGAGAGCGTTTGTTCCTTTTAAGGATGATTACTCTTCTTTGTTGGATCGCTCTCCAAGAAAACAAGTTCCTGTTGGGCCAAATCATCAAGCCAGTATTCCATCATGGAGTGGACACTCTAAAAAGTTGGATGAGGAAGATGGGGGTAATCTCAGCCGCTTTTCCTTGCATTTGATAACTGATTATGACTCTGAGGAAAGGCTTTTGGGAACTACTGTTATTCCAATGCCTGATGTGAACCTATCACCTCCGGAGTGTGATAAGGTTGGGCAGGGCCGAACAAATTGTAAATGCCTAGATGCCGGGACCTTCAGGTGTGTGCAGCAGCATGTCATGGAAGCACGGGAAGACCTTAAAAGAAATCTTGGAAATGAAAAGTTTGTGAAGTTGGGTTTATGTGACATGGGAGAGGTAGTAGCACGAAGATGGAGTGATGAAGAAGAGCAGGCTTTTCACGATGTTGTTTACTCCAATCCTGCATCATTGGGTAGAAAATTTTGGAAGCATTTGTCTGCGGTGTTCCCTTCTCGAAGTAAAAGGGAACTGGTCAGCTATTATTTTAATGTGTTCATGCTTCGTAGGCGGGCTGCTCAGAACAGAACTAATACTTTAGTAACAGACAGTGATGATGATGAGTGGCATGGAAGCTATGGAAGTGCCAATGGTGGTATAGTTGCAGAAGATGATGAAGACTCTGTTATTGACTCTGTTGAGGATGGTCAAGTGGTGGGCCATAGAGAGTACTCTGAAGAAGATGATAGCGATGATGATGACAGTGATGGTGATGATTATGTGGGATATGGAGAAGATGGTGGGATGGATCATATAGGAGAATCATGCAGGCTGAAATTGGTGGATGAGGGAAAATATGATAAAATAGCTCAGAATGGGGAGAAGATTCCAGGGTGTTCTGAGGAGGAATTTGGTTATCAAGATGACTCATGTGTATCTTTCGAGTTTCAGCCCTATATGCATGACTCTTGTGGTCGAATTGATGCTGAACCTGCTGGTGGTGCTTTACAAGGCACTGGATTCAAGGACGAGCATAGCCAAAGCTTGCGTAGCCAAGACGATGCATCAAGTGATGTAGTTGGTCATGGATATCTATTGGAGCCTTGTGATGCTAAAGTTTGGGATGCTAGGTTCCCAATGGATCCCATGAAAGGTATTGATCTTCTACCTACATGGAGTATGATTGAAGACATATTTGATCAAGGTATGGGGGATTACAAGATGAGGGATGACCAAAAGGCACCAGCTAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

531

Amino Acids

59.31

Weight (kDa)

4.51

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 1339
AccB1I GGYRCC 1 cut(s) 1579
AccB7I CCANNNNNTGG 1 cut(s) 1589
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 3 cut(s) 484, 842, 910
AclWI GGATC 4 cut(s) 381, 1155, 1475, 1488
AcsI RAATTY 2 cut(s) 821, 1247
AcuI CTGAAG 2 cut(s) 622, 1095
AfaI GTAC 2 cut(s) 189, 1070
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 1337, 1490, 1589
AgsI TTSAA 6 cut(s) 60, 194, 219, 314, 1363, 1526
AjnI CCWGG 2 cut(s) 36, 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AloI GAACNNNNNNTCC 2 cut(s) 1454, 1486
AluBI AGCT 8 cut(s) 43, 67, 224, 879, 975, 1208, 1383, 1586
AluI AGCT 8 cut(s) 43, 67, 224, 879, 975, 1208, 1383, 1586
Alw21I GWGCWC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 4 cut(s) 381, 1155, 1475, 1488
Aor13HI TCCGGA 1 cut(s) 577
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 4 cut(s) 14, 404, 601, 1057
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 64, 649, 652, 914
ApoI RAATTY 2 cut(s) 821, 1247
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 5 cut(s) 15, 404, 601, 633, 1057
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 5 cut(s) 158, 259, 293, 564, 1121
AvaII GGWCC 1 cut(s) 633
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 1480
BanI GGYRCC 1 cut(s) 1579
BbsI GAAGAC 4 cut(s) 294, 681, 1023, 1533
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 76, 661, 664, 901
BccI CCATC 8 cut(s) 146, 436, 461, 747, 1037, 1100, 1130, 1138
BciT130I CCWGG 2 cut(s) 38, 1230
BclI TGATCA 1 cut(s) 1537
BcnI CCSGG 1 cut(s) 631
BfaI CTAG 3 cut(s) 623, 1467, 1587
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 1339
BisI GCNGC 5 cut(s) 65, 484, 650, 653, 915
BlsI GCNGC 5 cut(s) 66, 485, 651, 654, 916
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 3 cut(s) 38, 631, 1230
Bme18I GGWCC 1 cut(s) 633
BmgT120I GGNCC 5 cut(s) 15, 404, 601, 633, 1057
BmiI GGNNCC 5 cut(s) 634, 1440, 1472, 1482, 1581
BmrFI CCNGG 3 cut(s) 38, 631, 1230
BmsI GCATC 8 cut(s) 148, 616, 815, 1312, 1390, 1412, 1438, 1453
BpiI GAAGAC 4 cut(s) 294, 681, 1023, 1533
BpuMI CCSGG 1 cut(s) 631
BsaJI CCNNGG 2 cut(s) 326, 1229
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 3 cut(s) 1337, 1490, 1589
Bse1I ACTGG 4 cut(s) 75, 420, 876, 1360
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 2 cut(s) 38, 1230
BseDI CCNNGG 2 cut(s) 326, 1229
BseGI GGATG 9 cut(s) 157, 163, 358, 463, 1048, 1149, 1189, 1468, 1573
BseLI CCNNNNNNNGG 3 cut(s) 1337, 1490, 1589
BseMII CTCAG 6 cut(s) 188, 493, 510, 932, 1223, 1230
BseNI ACTGG 4 cut(s) 75, 420, 876, 1360
BseRI GAGGAG 1 cut(s) 1256
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 4 cut(s) 76, 661, 664, 901
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 4 cut(s) 16, 406, 603, 1059
BshNI GGYRCC 1 cut(s) 1579
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 578, 630
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 3 cut(s) 1337, 1490, 1589
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 4 cut(s) 16, 406, 603, 1059
Bsp1286I GDGCHC 1 cut(s) 124
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
BspACI CCGC 3 cut(s) 484, 842, 910
BspANI GGCC 4 cut(s) 16, 406, 603, 1059
BspCNI CTCAG 6 cut(s) 187, 492, 511, 931, 1222, 1231
BspEI TCCGGA 1 cut(s) 577
BspLI GGNNCC 5 cut(s) 634, 1440, 1472, 1482, 1581
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 1339
BspPI GGATC 4 cut(s) 381, 1155, 1475, 1488
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 1579
BsrI ACTGG 4 cut(s) 75, 420, 876, 1360
BssECI CCNNGG 2 cut(s) 326, 1229
BssMI GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 38, 1230
Bst4CI ACNGT 3 cut(s) 544, 950, 1103
Bst6I CTCTTC 2 cut(s) 367, 762
BstC8I GCNNGC 4 cut(s) 774, 912, 1169, 1385
BstDEI CTNAG 6 cut(s) 174, 479, 519, 918, 1209, 1239
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 9 cut(s) 157, 163, 358, 463, 1048, 1149, 1189, 1468, 1573
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 5 cut(s) 376, 1150, 1483, 1501, 1540
BstMBI GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
BstMWI GCNNNNNNNGC 7 cut(s) 61, 257, 907, 1297, 1331, 1340, 1389
BstNI CCWGG 2 cut(s) 38, 1230
BstNSI RCATGY 1 cut(s) 659
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 36, 629, 1228
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 4 cut(s) 76, 661, 664, 901
BstV2I GAAGAC 4 cut(s) 294, 681, 1023, 1533
BstX2I RGATCY 1 cut(s) 1480
BstYI RGATCY 1 cut(s) 1480
BsuRI GGCC 4 cut(s) 16, 406, 603, 1059
BtgZI GCGATG 1 cut(s) 1104
BtsCI GGATG 9 cut(s) 157, 163, 358, 463, 1048, 1149, 1189, 1468, 1573
BtsIMutI CAGTG 5 cut(s) 82, 182, 955, 1108, 1353
BveI ACCTGC 1 cut(s) 1339
Cac8I GCNNGC 4 cut(s) 774, 912, 1169, 1385
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 5 cut(s) 15, 404, 601, 633, 1057
Csp6I GTAC 2 cut(s) 188, 1069
CviQI GTAC 2 cut(s) 188, 1069
DdeI CTNAG 6 cut(s) 174, 479, 519, 918, 1209, 1239
DpnI GATC 5 cut(s) 375, 1149, 1482, 1500, 1539
DpnII GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 367, 762
EarI CTCTTC 2 cut(s) 367, 762
Eco130I CCWWGG 1 cut(s) 326
Eco32I GATATC 1 cut(s) 1430
Eco47I GGWCC 1 cut(s) 633
Eco47III AGCGCT 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 622, 1095
Eco91I GGTNACC 1 cut(s) 265
EcoO109I RGGNCCY 2 cut(s) 15, 633
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 36, 1228
EcoRV GATATC 1 cut(s) 1430
EcoT14I CCWWGG 1 cut(s) 326
EcoT22I ATGCAT 2 cut(s) 1302, 1405
ErhI CCWWGG 1 cut(s) 326
FaqI GGGAC 1 cut(s) 646
FauI CCCGC 1 cut(s) 903
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 1537
Fnu4HI GCNGC 5 cut(s) 65, 484, 650, 653, 915
FokI GGATG 9 cut(s) 164, 170, 365, 470, 1055, 1156, 1196, 1475, 1580
Fsp4HI GCNGC 5 cut(s) 65, 484, 650, 653, 915
FspBI CTAG 3 cut(s) 623, 1467, 1587
GlaI GCGC 1 cut(s) 86
GluI GCNGC 5 cut(s) 65, 484, 650, 653, 915
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 4 cut(s) 16, 406, 603, 1059
HapII CCGG 2 cut(s) 578, 630
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 1381
HpaII CCGG 2 cut(s) 578, 630
HphI GGTGA 5 cut(s) 158, 259, 293, 564, 1121
Hpy166II GTNNAC 5 cut(s) 31, 122, 440, 565, 793
Hpy188I TCNGA 6 cut(s) 100, 520, 921, 1075, 1212, 1240
Hpy188III TCNNGA 4 cut(s) 578, 782, 855, 1259
Hpy8I GTNNAC 5 cut(s) 31, 122, 440, 565, 793
HpyAV CCTTC 2 cut(s) 646, 861
HpyCH4III ACNGT 3 cut(s) 544, 950, 1103
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 257, 907, 1297, 1331, 1340, 1389
HpyF3I CTNAG 6 cut(s) 174, 479, 519, 918, 1209, 1239
HspAI GCGC 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 1537
Kzo9I GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 2 cut(s) 40, 1438
Lsp1109I GCAGC 4 cut(s) 76, 661, 664, 901
LweI GCATC 8 cut(s) 148, 616, 815, 1312, 1390, 1412, 1438, 1453
MaeI CTAG 3 cut(s) 623, 1467, 1587
MaeIII GTNAC 3 cut(s) 265, 725, 940
MalI GATC 5 cut(s) 375, 1149, 1482, 1500, 1539
MboI GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
MflI RGATCY 1 cut(s) 1480
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 5 cut(s) 610, 821, 1175, 1247, 1317
MlyI GAGTC 5 cut(s) 509, 1013, 1025, 1259, 1298
MmeI TCCRAC 2 cut(s) 351, 435
Mph1103I ATGCAT 2 cut(s) 1302, 1405
MroI TCCGGA 1 cut(s) 577
MseI TTAA 5 cut(s) 9, 246, 348, 681, 888
MslI CAYNNNNRTG 1 cut(s) 751
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 578, 630
MspR9I CCNGG 3 cut(s) 38, 631, 1230
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 2 cut(s) 38, 1230
MwoI GCNNNNNNNGC 7 cut(s) 61, 257, 907, 1297, 1331, 1340, 1389
NciI CCSGG 1 cut(s) 631
NdeI CATATG 1 cut(s) 136
NdeII GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
NlaIV GGNNCC 5 cut(s) 634, 1440, 1472, 1482, 1581
NmuCI GTSAC 2 cut(s) 265, 725
NsiI ATGCAT 2 cut(s) 1302, 1405
NspI RCATGY 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 762
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 5 cut(s) 71, 215, 1160, 1225, 1359
PflMI CCANNNNNTGG 1 cut(s) 1589
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 5 cut(s) 66, 485, 651, 654, 916
PleI GAGTC 5 cut(s) 509, 1013, 1025, 1259, 1298
PpsI GAGTC 5 cut(s) 509, 1013, 1025, 1259, 1298
PpuMI RGGWCCY 1 cut(s) 633
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 36, 1228
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 36, 1228
PspN4I GGNNCC 5 cut(s) 634, 1440, 1472, 1482, 1581
PspPI GGNCC 5 cut(s) 15, 404, 601, 633, 1057
PspPPI RGGWCCY 1 cut(s) 633
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 1480
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 189, 1070
RsaNI GTAC 2 cut(s) 188, 1069
RseI CAYNNNNRTG 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 5 cut(s) 9, 246, 348, 681, 888
SatI GCNGC 5 cut(s) 65, 484, 650, 653, 915
Sau3AI GATC 5 cut(s) 373, 1147, 1480, 1498, 1537
Sau96I GGNCC 5 cut(s) 15, 404, 601, 633, 1057
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 5 cut(s) 509, 1013, 1025, 1259, 1298
ScrFI CCNGG 3 cut(s) 38, 631, 1230
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 8 cut(s) 148, 616, 815, 1312, 1390, 1412, 1438, 1453
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 751
Sse9I AATT 5 cut(s) 610, 821, 1175, 1247, 1317
SsiI CCGC 3 cut(s) 484, 842, 910
SspMI CTAG 3 cut(s) 623, 1467, 1587
StyD4I CCNGG 3 cut(s) 36, 629, 1228
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 544, 950, 1103
TaqI TCGA 3 cut(s) 856, 1281, 1315
TasI AATT 5 cut(s) 610, 821, 1175, 1247, 1317
TatI WGTACW 1 cut(s) 1068
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 5 cut(s) 71, 215, 1160, 1225, 1359
Tru1I TTAA 5 cut(s) 9, 246, 348, 681, 888
Tru9I TTAA 5 cut(s) 9, 246, 348, 681, 888
TscAI CASTG 5 cut(s) 82, 182, 955, 1108, 1360
TseFI GTSAC 2 cut(s) 265, 725
TseI GCWGC 4 cut(s) 64, 649, 652, 914
Tsp45I GTSAC 2 cut(s) 265, 725
TspDTI ATGAA 5 cut(s) 714, 777, 886, 1029, 1502
TspRI CASTG 5 cut(s) 82, 182, 955, 1108, 1360
Van91I CCANNNNNTGG 1 cut(s) 1589
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 633
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 2 cut(s) 821, 1247
XceI RCATGY 1 cut(s) 659
XspI CTAG 3 cut(s) 623, 1467, 1587
ZrmI AGTACT 1 cut(s) 1070
Zsp2I ATGCAT 2 cut(s) 1302, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.