FvH4_4g30340
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014264
Physical Location & Seq
Forward (+)
30018680 .. 30021624
2945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30340.t1

Sequence Viewer

Length: 1536 bp
ATGGGAGTCAAGAGGCCCTTTGATAATGTGGACTTTCAGGAGCTTCCTTGTAAGCATTCAAGGCAGCTTGATTGCAGTGACAAGCGTTTTCCATTTGCTGATGTTGTTTCTTGTTATAGTGCACCTGAAAAACCTTACGTTTCAGGTGATGGGCTTGGGGTACTAGAAAAGTATAATGTTGGTAAAGATTCAACAGATGTCAGTAAAGGTAGTGTGATCAATGCTACCTCTGCATTGGTCACCAGCAGTTGTGGTGAACAAGATGTTGGTTCTGGTAAACAAGATGCTCCTTCACCTCCTGCAGAGTATTTTGAATGTGATTACCCCAGGAGAGCATTTGTTTCTTTTAAGGATGACTACTCTTCTTTGTTGGATCGCTCTCCAAGAAAACAAGTTCCTGTTGGGCCAAATCATCAAGCCAGTATTCCATCATGGAGTGGACACGACTGTTATACTGTTGAGGATAGGCTTTTGGGAACGACTGTTATTCCAATGCCTGACCTGAACCTGTCAGCTCCGGAGTTTGATAAGGTGGGGCAGGGCCGAAAAAATTGTAAATGCCTAGATGCTGGGACCTGCAGGTGTGTGCAGCAGCATATCATGGAAGCACGGGAAGAACTCCGAAGAACCCTTGGAAATGAAAAGTTTGTGAAGTTGGGTTTTTGTGACATGGGAGAGGAAGTAGTAGCACGAAGATGGAGTGATGAAGAAGAGCAGGCTTTTCATGATGTTGTTTACTCCAATCCTGCGTCGTTGGGTAGAAAATTTTGGAAGCATTTGTCTGCGGTGTTCCCTTCTCGAAGTAAAAGGGAACTAGTCAGCTATTATTTTAATGTGTTCATTCTACGTAGACGGGCTGCTCAGAACAGATCCAATACTTTAGAAATAGACAGTGATGATGATGAGTGGCATGGAAGCTATGGAAGTGCCAATGATGGTACATTTGCAGAAGATGATGAAGACTCTGTCATTGACTCTGTTGAGGATGGTCAAGCAGTGGGCCCTAGAGGGTACTCTGAAGAAGATGATAGTGATGATGATGACAGTGATGGTGATGGTGATGATTATGTGGGATATGGAGCAGATTGTGGGATGAATTATATAGGAGAATCGTACAGGCTGAAATTGGTTGATGAGGGAAAACATGATACTACAGCTCACAATGGGGAGAAGATTCCAGGGTGTTATGAGGAGGAATTTGGTTATCAAGATGATTCATGCGTGTCTTTTGAGTTCCAGCCTTATGTGCAAGACTCTTGTGGTCGAATTGATGGTGACCGTGAACCTGCTGCTGGTGTCTTACCAGGCACTGGGTTCAAGGATGAGCGTAGCCAGGATGATGCATCTAGTGATGTAGTGGGTCATGGATATCTGTTGGAGCCTTGTGACACTAAAATTTGGGACGCTAGGTTACCAATGGATCCCATCAAAGGTATTGATCTTCTACCCACATGGAGTATGATTGAAAACATATTTGATCAAGGCATGGGGGATTACAAGATGAGGGATGACCAAAAGGCACCAGCTAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

512

Amino Acids

56.81

Weight (kDa)

4.5

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 570
Acc36I ACCTGC 3 cut(s) 570, 584, 1294
AccB1I GGYRCC 1 cut(s) 1519
AccB7I CCANNNNNTGG 2 cut(s) 1310, 1529
AccI GTMKAC 1 cut(s) 850
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 1 cut(s) 785
AclWI GGATC 4 cut(s) 381, 864, 1415, 1428
AcsI RAATTY 3 cut(s) 764, 1196, 1395
AcuI CTGAAG 1 cut(s) 1038
AfaI GTAC 4 cut(s) 162, 940, 1013, 1115
AfiI CCNNNNNNNGG 4 cut(s) 1292, 1310, 1430, 1529
AgsI TTSAA 5 cut(s) 60, 192, 314, 1318, 1466
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 4 cut(s) 326, 1177, 1303, 1332
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 7 cut(s) 43, 67, 515, 822, 918, 1157, 1526
AluI AGCT 7 cut(s) 43, 67, 515, 822, 918, 1157, 1526
Alw21I GWGCWC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 4 cut(s) 381, 864, 1415, 1428
AlwNI CAGNNNCTG 1 cut(s) 1310
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 4 cut(s) 14, 404, 541, 1000
ApaI GGGCCC 1 cut(s) 1004
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 64, 589, 592, 857, 1289
ApoI RAATTY 3 cut(s) 764, 1196, 1395
AspS9I GGNCC 6 cut(s) 15, 404, 541, 573, 1000, 1001
AsuHPI GGTGA 7 cut(s) 158, 232, 266, 285, 1064, 1070, 1286
AvaII GGWCC 1 cut(s) 573
BaeGI GKGCMC 2 cut(s) 124, 1004
BamHI GGATCC 1 cut(s) 1420
BanI GGYRCC 1 cut(s) 1519
BanII GRGCYC 1 cut(s) 1004
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 76, 601, 604, 844, 1276
BccI CCATC 9 cut(s) 143, 436, 690, 929, 980, 1043, 1049, 1265, 1433
BciT130I CCWGG 4 cut(s) 328, 1179, 1305, 1334
BclI TGATCA 2 cut(s) 216, 1477
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 7 cut(s) 164, 563, 815, 1005, 1347, 1407, 1527
BfmI CTRYAG 3 cut(s) 300, 577, 1152
BfuAI ACCTGC 3 cut(s) 570, 584, 1294
BisI GCNGC 5 cut(s) 65, 590, 593, 858, 1290
BlsI GCNGC 5 cut(s) 66, 591, 594, 859, 1291
Bme1390I CCNGG 4 cut(s) 328, 1179, 1305, 1334
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 6 cut(s) 15, 404, 541, 573, 1000, 1001
BmiI GGNNCC 5 cut(s) 574, 1002, 1380, 1422, 1521
BmrFI CCNGG 4 cut(s) 328, 1179, 1305, 1334
BmrI ACTGGG 1 cut(s) 1320
BmsI GCATC 4 cut(s) 274, 556, 1330, 1352
BmuI ACTGGG 1 cut(s) 1320
BpiI GAAGAC 1 cut(s) 966
BsaAI YACGTR 1 cut(s) 848
BsaJI CCNNGG 3 cut(s) 326, 631, 1178
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 4 cut(s) 1292, 1310, 1430, 1529
Bse1I ACTGG 2 cut(s) 420, 1315
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 4 cut(s) 328, 1179, 1305, 1334
BseDI CCNNGG 3 cut(s) 326, 631, 1178
BseGI GGATG 6 cut(s) 358, 991, 1098, 1327, 1342, 1513
BseLI CCNNNNNNNGG 4 cut(s) 1292, 1310, 1430, 1529
BseMII CTCAG 1 cut(s) 875
BseNI ACTGG 2 cut(s) 420, 1315
BseRI GAGGAG 1 cut(s) 1205
BseSI GKGCMC 2 cut(s) 124, 1004
BseXI GCAGC 5 cut(s) 76, 601, 604, 844, 1276
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 4 cut(s) 16, 406, 543, 1002
BshNI GGYRCC 1 cut(s) 1519
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 586, 1415
BslI CCNNNNNNNGG 4 cut(s) 1292, 1310, 1430, 1529
BsmFI GGGAC 2 cut(s) 586, 1415
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 4 cut(s) 16, 406, 543, 1002
Bsp120I GGGCCC 1 cut(s) 1000
Bsp1286I GDGCHC 2 cut(s) 124, 1004
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
BspACI CCGC 1 cut(s) 785
BspANI GGCC 4 cut(s) 16, 406, 543, 1002
BspCNI CTCAG 1 cut(s) 874
BspEI TCCGGA 1 cut(s) 517
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 5 cut(s) 574, 1002, 1380, 1422, 1521
BspMAI CTGCAG 2 cut(s) 304, 581
BspMI ACCTGC 3 cut(s) 570, 584, 1294
BspPI GGATC 4 cut(s) 381, 864, 1415, 1428
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 1519
BsrI ACTGG 2 cut(s) 420, 1315
BssECI CCNNGG 3 cut(s) 326, 631, 1178
BssMI GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 4 cut(s) 328, 1179, 1305, 1334
Bst4CI ACNGT 6 cut(s) 449, 457, 484, 893, 1046, 1280
Bst6I CTCTTC 2 cut(s) 367, 705
BstBAI YACGTR 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 1 cut(s) 861
BstEII GGTNACC 3 cut(s) 238, 1274, 1410
BstF5I GGATG 6 cut(s) 358, 991, 1098, 1327, 1342, 1513
BstKTI GATC 6 cut(s) 219, 376, 872, 1423, 1441, 1480
BstMBI GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
BstMWI GCNNNNNNNGC 3 cut(s) 61, 230, 1246
BstNI CCWGG 4 cut(s) 328, 1179, 1305, 1334
BstPI GGTNACC 3 cut(s) 238, 1274, 1410
BstSCI CCNGG 4 cut(s) 326, 1177, 1303, 1332
BstSFI CTRYAG 3 cut(s) 300, 577, 1152
BstSLI GKGCMC 2 cut(s) 124, 1004
BstSNI TACGTA 1 cut(s) 848
BstV1I GCAGC 5 cut(s) 76, 601, 604, 844, 1276
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 2 cut(s) 869, 1420
BstYI RGATCY 2 cut(s) 869, 1420
BsuRI GGCC 4 cut(s) 16, 406, 543, 1002
BtsCI GGATG 6 cut(s) 358, 991, 1098, 1327, 1342, 1513
BtsI GCAGTG 2 cut(s) 82, 1002
BtsIMutI CAGTG 5 cut(s) 82, 898, 1002, 1051, 1308
BveI ACCTGC 3 cut(s) 570, 584, 1294
Cac8I GCNNGC 1 cut(s) 717
CaiI CAGNNNCTG 1 cut(s) 1310
CciI TCATGA 1 cut(s) 724
Cfr13I GGNCC 6 cut(s) 15, 404, 541, 573, 1000, 1001
CseI GACGC 2 cut(s) 738, 1412
Csp6I GTAC 4 cut(s) 161, 939, 1012, 1114
CviQI GTAC 4 cut(s) 161, 939, 1012, 1114
DdeI CTNAG 1 cut(s) 861
DpnI GATC 6 cut(s) 218, 375, 871, 1422, 1440, 1479
DpnII GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
Eam1104I CTCTTC 2 cut(s) 367, 705
EarI CTCTTC 2 cut(s) 367, 705
Eco105I TACGTA 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 1004
Eco32I GATATC 1 cut(s) 1370
Eco47I GGWCC 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 1038
Eco91I GGTNACC 3 cut(s) 238, 1274, 1410
EcoO109I RGGNCCY 3 cut(s) 15, 573, 1001
EcoO65I GGTNACC 3 cut(s) 238, 1274, 1410
EcoRII CCWGG 4 cut(s) 326, 1177, 1303, 1332
EcoRV GATATC 1 cut(s) 1370
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 1345
EcoT38I GRGCYC 1 cut(s) 1004
ErhI CCWWGG 1 cut(s) 631
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 2 cut(s) 586, 1415
FbaI TGATCA 2 cut(s) 216, 1477
FblI GTMKAC 1 cut(s) 850
Fnu4HI GCNGC 5 cut(s) 65, 590, 593, 858, 1290
FokI GGATG 6 cut(s) 365, 998, 1105, 1334, 1349, 1520
FriOI GRGCYC 1 cut(s) 1004
Fsp4HI GCNGC 5 cut(s) 65, 590, 593, 858, 1290
FspBI CTAG 7 cut(s) 164, 563, 815, 1005, 1347, 1407, 1527
GluI GCNGC 5 cut(s) 65, 590, 593, 858, 1290
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 4 cut(s) 16, 406, 543, 1002
HapII CCGG 1 cut(s) 518
HgaI GACGC 2 cut(s) 738, 1412
HinfI GANTC 8 cut(s) 6, 188, 962, 974, 1109, 1174, 1214, 1253
HpaII CCGG 1 cut(s) 518
HphI GGTGA 7 cut(s) 158, 232, 266, 285, 1064, 1070, 1286
Hpy166II GTNNAC 8 cut(s) 31, 122, 257, 278, 440, 736, 851, 1283
Hpy188I TCNGA 3 cut(s) 623, 864, 1018
Hpy188III TCNNGA 6 cut(s) 10, 38, 518, 725, 798, 1208
Hpy8I GTNNAC 8 cut(s) 31, 122, 257, 278, 440, 736, 851, 1283
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 2 cut(s) 300, 804
HpyCH4III ACNGT 6 cut(s) 449, 457, 484, 893, 1046, 1280
HpyCH4IV ACGT 2 cut(s) 138, 847
HpyCH4V TGCA 9 cut(s) 75, 122, 233, 302, 579, 589, 947, 1249, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 230, 1246
HpyF3I CTNAG 1 cut(s) 861
HpySE526I ACGT 2 cut(s) 138, 847
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 2 cut(s) 216, 1477
Kzo9I GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 5 cut(s) 40, 292, 520, 1079, 1378
Lsp1109I GCAGC 5 cut(s) 76, 601, 604, 844, 1276
LweI GCATC 4 cut(s) 274, 556, 1330, 1352
MaeI CTAG 7 cut(s) 164, 563, 815, 1005, 1347, 1407, 1527
MaeII ACGT 2 cut(s) 138, 847
MaeIII GTNAC 6 cut(s) 77, 238, 665, 1274, 1385, 1410
MalI GATC 6 cut(s) 218, 375, 871, 1422, 1440, 1479
MboI GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
MflI RGATCY 2 cut(s) 869, 1420
MhlI GDGCHC 2 cut(s) 124, 1004
MluCI AATT 7 cut(s) 550, 764, 1096, 1124, 1196, 1266, 1395
MlyI GAGTC 4 cut(s) 15, 956, 968, 1247
MmeI TCCRAC 2 cut(s) 351, 1356
Mph1103I ATGCAT 1 cut(s) 1345
MroI TCCGGA 1 cut(s) 517
MseI TTAA 2 cut(s) 348, 831
MslI CAYNNNNRTG 1 cut(s) 694
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 4 cut(s) 328, 1179, 1305, 1334
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 4 cut(s) 328, 1179, 1305, 1334
MwoI GCNNNNNNNGC 3 cut(s) 61, 230, 1246
NdeII GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
NlaIV GGNNCC 5 cut(s) 574, 1002, 1380, 1422, 1521
NmuCI GTSAC 5 cut(s) 77, 238, 665, 1274, 1385
NsiI ATGCAT 1 cut(s) 1345
PagI TCATGA 1 cut(s) 724
PaqCI CACCTGC 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 705
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 4 cut(s) 188, 1109, 1174, 1214
PflFI GACNNNGTC 1 cut(s) 965
PflMI CCANNNNNTGG 2 cut(s) 1310, 1529
PkrI GCNGC 5 cut(s) 66, 591, 594, 859, 1291
PleI GAGTC 4 cut(s) 14, 956, 968, 1247
PpsI GAGTC 4 cut(s) 14, 956, 968, 1247
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 573
Psp6I CCWGG 4 cut(s) 326, 1177, 1303, 1332
PspEI GGTNACC 3 cut(s) 238, 1274, 1410
PspFI CCCAGC 1 cut(s) 569
PspGI CCWGG 4 cut(s) 326, 1177, 1303, 1332
PspN4I GGNNCC 5 cut(s) 574, 1002, 1380, 1422, 1521
PspOMI GGGCCC 1 cut(s) 1000
PspPI GGNCC 6 cut(s) 15, 404, 541, 573, 1000, 1001
PspPPI RGGWCCY 1 cut(s) 573
PstI CTGCAG 2 cut(s) 304, 581
PstNI CAGNNNCTG 1 cut(s) 1310
PsuI RGATCY 2 cut(s) 869, 1420
PsyI GACNNNGTC 1 cut(s) 965
RsaI GTAC 4 cut(s) 162, 940, 1013, 1115
RsaNI GTAC 4 cut(s) 161, 939, 1012, 1114
RseI CAYNNNNRTG 1 cut(s) 694
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 2 cut(s) 348, 831
SatI GCNGC 5 cut(s) 65, 590, 593, 858, 1290
Sau3AI GATC 6 cut(s) 216, 373, 869, 1420, 1438, 1477
Sau96I GGNCC 6 cut(s) 15, 404, 541, 573, 1000, 1001
SbfI CCTGCAGG 1 cut(s) 581
SchI GAGTC 4 cut(s) 15, 956, 968, 1247
ScrFI CCNGG 4 cut(s) 328, 1179, 1305, 1334
SdaI CCTGCAGG 1 cut(s) 581
SduI GDGCHC 2 cut(s) 124, 1004
SfaNI GCATC 4 cut(s) 274, 556, 1330, 1352
SfcI CTRYAG 3 cut(s) 300, 577, 1152
SinI GGWCC 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 694
SnaBI TACGTA 1 cut(s) 848
SpeI ACTAGT 1 cut(s) 814
Sse8387I CCTGCAGG 1 cut(s) 581
Sse9I AATT 7 cut(s) 550, 764, 1096, 1124, 1196, 1266, 1395
SsiI CCGC 1 cut(s) 785
SspMI CTAG 7 cut(s) 164, 563, 815, 1005, 1347, 1407, 1527
StyD4I CCNGG 4 cut(s) 326, 1177, 1303, 1332
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 6 cut(s) 449, 457, 484, 893, 1046, 1280
TaiI ACGT 2 cut(s) 141, 850
TaqI TCGA 2 cut(s) 799, 1264
TasI AATT 7 cut(s) 550, 764, 1096, 1124, 1196, 1266, 1395
TfiI GAWTC 4 cut(s) 188, 1109, 1174, 1214
Tru1I TTAA 2 cut(s) 348, 831
Tru9I TTAA 2 cut(s) 348, 831
TscAI CASTG 5 cut(s) 82, 898, 1002, 1051, 1315
TseFI GTSAC 5 cut(s) 77, 238, 665, 1274, 1385
TseI GCWGC 5 cut(s) 64, 589, 592, 857, 1289
Tsp45I GTSAC 5 cut(s) 77, 238, 665, 1274, 1385
TspDTI ATGAA 7 cut(s) 654, 713, 720, 829, 972, 1109, 1206
TspRI CASTG 5 cut(s) 82, 898, 1002, 1051, 1315
Tth111I GACNNNGTC 1 cut(s) 965
Van91I CCANNNNNTGG 2 cut(s) 1310, 1529
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 573
XapI RAATTY 3 cut(s) 764, 1196, 1395
XmiI GTMKAC 1 cut(s) 850
XspI CTAG 7 cut(s) 164, 563, 815, 1005, 1347, 1407, 1527
Zsp2I ATGCAT 1 cut(s) 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.