Rh4CG387700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014264
Physical Location & Seq
Forward (+)
63918872 .. 63921999
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG387700.1

Sequence Viewer

Length: 1629 bp
ATGGGATTTAAAAGGCCCTTTGATGATGTGGACTTCCAGGAGCTTCCTTATAAGCATTCAAGGCAGCTTGATTCCAGTGATAAGCGCTCTCCATTTTCTGATGTTGTTTCTTGTTATAGTGCACCCGAAAAACCATATGTTTCAGGTGAGGATGGGGATGCCCTTTGTAAAACTCAGTGGTTTGAGGTACTAGGAAAGTATAATGTTGGTAAAGATTCAACAGCTGTCAATAAAGGTTGTGTGATTAATGCTACCTCTGCATTGGTCACCAGCAGTTGTGGTGAAGAAGACATTGGTTCTGGTGGACAAGATGCTTCTTCACCTCCTGCAGAGTATTTTGAATATGACTGCCCAAGGAGAGCGTTTGTTCCTTTTAAGGATGATTACTCTTCTTTGTTGGATCGCTCTCCAAGAAAACAAGTTCCTGTTGGGCCAAATCATCAAGCCAGTATTCCATCATGGAGTGGACACTCTAAAAAGTTGGATGAGGAAGATGGGGGTAATCTCAGCCGCTTTTCCTTGCATTTGATAACTGATTATGACTCTGAGGAAAGGCTTTTGGGAACTGCTGTTATTCCAATGCCTGATGTGAACCTATCACCTCCGGAGTGCGATAAGGTTGGGCAGGGCCGAACAAATTGTAAATGCCTAGATGCCGGGACCTTCAGGTGTGTGCAGCAGCATGTCATGGAAGCACGGGAAGACCTTAAAAGAAATCTTGGAAATGAAAAGTTTGTGAAGTTGGGTTTATGTGACATGGGAGAGGTAGTAGCACGAAGATGGAGTGATGAAGAAGAGCAGGCTTTTCACGATGTTGTTTACTCCAATCCTGCATCATTGGGTAGAAAATTTTGGAAGCATTTGTCTGCGGTGTTCCCTTCTCGAAGTAAAAGGGAACTGGTCAGCTATTATTTTAATGTGTTCATGCTTCGTAGGCGGGCTGCTCAGAACAGATCTAATACTTTAGAAATAGACAGTGATGATGATGAGTGGCATGGAAGCTATGGAAGTGCCAATGGTGGTATAGTTGCAGAAGATGATGAAGACTCTGTTATTGACTCTGTTGAGGATGGTCAAGCAGTGGGCCATAGAGAGTACTCTGAAGAAGATGATAGCGATGATGATGACAGTGATGGTGATGGTGATGATTATGTGGGATATGGAGAAGATGGTGGGATGGATCATATAGGAGAATCATACAGGCTGAAATTGGTTGATGAGGGAAAATATGATACTATAGCTCAGAATGGGGAGAAGATTCCAGGGTGTTCTGAGGAGGAATTTGGTTATCAAGATGACTCGTGCGTATCTTTCGAGTTTCAGCCCTATATGCATGACTCTTGTGGTCGAATTGATGCTGAACCTGCTGGTGGTGCTTTACAAGGCACTGGATTCAAGGACGAGCATAGCCAAAGCTTGCGTAGCCAAGACGATGCATCAAGTGATGTAGTTGGTCATGGATATCTATTGGAGCCTTGTGACGCTAAAGTTTGGGATGCTAGGTTCCCAATGGATCCCATGAAAGGTATTGATCTTCTACCTACATGGAGTATGATTGAAGACATATTTGATCAAGGCATGGGGGATTACAAGATGAGGGATGACCAAAAGGCACCAGCTAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

542

Amino Acids

60.22

Weight (kDa)

4.47

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 1372
AccB1I GGYRCC 1 cut(s) 1612
AccB7I CCANNNNNTGG 1 cut(s) 1622
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 3 cut(s) 511, 869, 937
AclWI GGATC 4 cut(s) 408, 1188, 1508, 1521
AcsI RAATTY 2 cut(s) 848, 1280
AcuI CTGAAG 2 cut(s) 649, 1122
AfaI GTAC 2 cut(s) 189, 1097
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 1370, 1523, 1622
AgsI TTSAA 5 cut(s) 60, 219, 341, 1396, 1559
AjnI CCWGG 2 cut(s) 36, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AloI GAACNNNNNNTCC 2 cut(s) 1487, 1519
AluBI AGCT 8 cut(s) 43, 67, 224, 906, 1002, 1241, 1416, 1619
AluI AGCT 8 cut(s) 43, 67, 224, 906, 1002, 1241, 1416, 1619
Alw21I GWGCWC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 4 cut(s) 408, 1188, 1508, 1521
Aor13HI TCCGGA 1 cut(s) 604
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 4 cut(s) 14, 431, 628, 1084
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 4 cut(s) 64, 676, 679, 941
ApoI RAATTY 2 cut(s) 848, 1280
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 7 cut(s) 158, 259, 293, 312, 591, 1148, 1154
AvaII GGWCC 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 1513
BanI GGYRCC 1 cut(s) 1612
BauI CACGAG 1 cut(s) 1300
BbsI GAAGAC 4 cut(s) 294, 708, 1050, 1566
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 76, 688, 691, 928
BccI CCATC 9 cut(s) 146, 463, 488, 774, 1064, 1127, 1133, 1163, 1171
BciT130I CCWGG 2 cut(s) 38, 1263
BclI TGATCA 1 cut(s) 1570
BcnI CCSGG 1 cut(s) 658
BfaI CTAG 4 cut(s) 191, 650, 1500, 1620
BfmI CTRYAG 2 cut(s) 327, 1236
BfoI RGCGCY 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 1372
BglII AGATCT 1 cut(s) 953
BisI GCNGC 5 cut(s) 65, 511, 677, 680, 942
BlsI GCNGC 5 cut(s) 66, 512, 678, 681, 943
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 3 cut(s) 38, 658, 1263
Bme18I GGWCC 1 cut(s) 660
BmgT120I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
BmiI GGNNCC 5 cut(s) 661, 1473, 1505, 1515, 1614
BmrFI CCNGG 3 cut(s) 38, 658, 1263
BmsI GCATC 8 cut(s) 148, 301, 643, 842, 1345, 1423, 1445, 1486
BpiI GAAGAC 4 cut(s) 294, 708, 1050, 1566
BpuMI CCSGG 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 353, 1262
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 1370, 1523, 1622
Bse1I ACTGG 4 cut(s) 75, 447, 903, 1393
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 2 cut(s) 38, 1263
BseDI CCNNGG 2 cut(s) 353, 1262
BseGI GGATG 8 cut(s) 157, 163, 385, 490, 1075, 1182, 1501, 1606
BseLI CCNNNNNNNGG 3 cut(s) 1370, 1523, 1622
BseMII CTCAG 6 cut(s) 188, 520, 537, 959, 1256, 1263
BseNI ACTGG 4 cut(s) 75, 447, 903, 1393
BseRI GAGGAG 1 cut(s) 1289
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 4 cut(s) 76, 688, 691, 928
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 4 cut(s) 16, 433, 630, 1086
BshNI GGYRCC 1 cut(s) 1612
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 605, 657
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 1370, 1523, 1622
BsmFI GGGAC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 4 cut(s) 16, 433, 630, 1086
Bsp1286I GDGCHC 1 cut(s) 124
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
BspACI CCGC 3 cut(s) 511, 869, 937
BspANI GGCC 4 cut(s) 16, 433, 630, 1086
BspCNI CTCAG 6 cut(s) 187, 519, 538, 958, 1255, 1264
BspEI TCCGGA 1 cut(s) 604
BspLI GGNNCC 5 cut(s) 661, 1473, 1505, 1515, 1614
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 1372
BspPI GGATC 4 cut(s) 408, 1188, 1508, 1521
BspQI GCTCTTC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 1612
BsrI ACTGG 4 cut(s) 75, 447, 903, 1393
BssECI CCNNGG 2 cut(s) 353, 1262
BssMI GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
BssSI CACGAG 1 cut(s) 1300
BssT1I CCWWGG 1 cut(s) 353
Bst2BI CACGAG 1 cut(s) 1300
Bst2UI CCWGG 2 cut(s) 38, 1263
Bst4CI ACNGT 2 cut(s) 977, 1130
Bst6I CTCTTC 2 cut(s) 394, 789
BstC8I GCNNGC 3 cut(s) 801, 939, 1418
BstDEI CTNAG 6 cut(s) 174, 506, 546, 945, 1242, 1272
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 8 cut(s) 157, 163, 385, 490, 1075, 1182, 1501, 1606
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 6 cut(s) 403, 956, 1183, 1516, 1534, 1573
BstMBI GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
BstMWI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1330, 1364, 1373, 1422
BstNI CCWGG 2 cut(s) 38, 1263
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 36, 656, 1261
BstSFI CTRYAG 2 cut(s) 327, 1236
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 4 cut(s) 76, 688, 691, 928
BstV2I GAAGAC 4 cut(s) 294, 708, 1050, 1566
BstX2I RGATCY 2 cut(s) 953, 1513
BstYI RGATCY 2 cut(s) 953, 1513
BsuRI GGCC 4 cut(s) 16, 433, 630, 1086
BtgZI GCGATG 1 cut(s) 1131
BtsCI GGATG 8 cut(s) 157, 163, 385, 490, 1075, 1182, 1501, 1606
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 6 cut(s) 82, 182, 982, 1086, 1135, 1386
BveI ACCTGC 1 cut(s) 1372
Cac8I GCNNGC 3 cut(s) 801, 939, 1418
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
CseI GACGC 1 cut(s) 1490
Csp6I GTAC 2 cut(s) 188, 1096
CviQI GTAC 2 cut(s) 188, 1096
DdeI CTNAG 6 cut(s) 174, 506, 546, 945, 1242, 1272
DpnI GATC 6 cut(s) 402, 955, 1182, 1515, 1533, 1572
DpnII GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 394, 789
EarI CTCTTC 2 cut(s) 394, 789
Eco130I CCWWGG 1 cut(s) 353
Eco32I GATATC 1 cut(s) 1463
Eco47I GGWCC 1 cut(s) 660
Eco47III AGCGCT 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 649, 1122
Eco91I GGTNACC 1 cut(s) 265
EcoO109I RGGNCCY 2 cut(s) 15, 660
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 36, 1261
EcoRV GATATC 1 cut(s) 1463
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 2 cut(s) 1335, 1438
ErhI CCWWGG 1 cut(s) 353
FaqI GGGAC 1 cut(s) 673
FauI CCCGC 1 cut(s) 930
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 1570
Fnu4HI GCNGC 5 cut(s) 65, 511, 677, 680, 942
FokI GGATG 8 cut(s) 164, 170, 392, 497, 1082, 1189, 1508, 1613
Fsp4HI GCNGC 5 cut(s) 65, 511, 677, 680, 942
FspBI CTAG 4 cut(s) 191, 650, 1500, 1620
GlaI GCGC 1 cut(s) 86
GluI GCNGC 5 cut(s) 65, 511, 677, 680, 942
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 4 cut(s) 16, 433, 630, 1086
HapII CCGG 2 cut(s) 605, 657
HgaI GACGC 1 cut(s) 1490
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 1414
HpaII CCGG 2 cut(s) 605, 657
HphI GGTGA 7 cut(s) 158, 259, 293, 312, 591, 1148, 1154
Hpy166II GTNNAC 6 cut(s) 31, 122, 305, 467, 592, 820
Hpy188I TCNGA 6 cut(s) 100, 547, 948, 1102, 1245, 1273
Hpy188III TCNNGA 4 cut(s) 605, 809, 882, 1292
Hpy8I GTNNAC 6 cut(s) 31, 122, 305, 467, 592, 820
HpyAV CCTTC 2 cut(s) 673, 888
HpyCH4III ACNGT 2 cut(s) 977, 1130
HpyCH4V TGCA 9 cut(s) 122, 260, 329, 523, 676, 833, 1031, 1333, 1436
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1330, 1364, 1373, 1422
HpyF3I CTNAG 6 cut(s) 174, 506, 546, 945, 1242, 1272
HspAI GCGC 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 1570
Kzo9I GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 40, 1471
Lsp1109I GCAGC 4 cut(s) 76, 688, 691, 928
LweI GCATC 8 cut(s) 148, 301, 643, 842, 1345, 1423, 1445, 1486
MaeI CTAG 4 cut(s) 191, 650, 1500, 1620
MaeIII GTNAC 3 cut(s) 265, 752, 1478
MalI GATC 6 cut(s) 402, 955, 1182, 1515, 1533, 1572
MboI GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
MflI RGATCY 2 cut(s) 953, 1513
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 5 cut(s) 637, 848, 1208, 1280, 1350
MlyI GAGTC 5 cut(s) 536, 1040, 1052, 1292, 1331
MmeI TCCRAC 2 cut(s) 378, 462
Mph1103I ATGCAT 2 cut(s) 1335, 1438
MroI TCCGGA 1 cut(s) 604
MseI TTAA 5 cut(s) 9, 246, 375, 708, 915
MslI CAYNNNNRTG 1 cut(s) 778
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 605, 657
MspR9I CCNGG 3 cut(s) 38, 658, 1263
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 2 cut(s) 38, 1263
MwoI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1330, 1364, 1373, 1422
NciI CCSGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 136
NdeII GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
NlaIV GGNNCC 5 cut(s) 661, 1473, 1505, 1515, 1614
NmuCI GTSAC 3 cut(s) 265, 752, 1478
NsiI ATGCAT 2 cut(s) 1335, 1438
NspI RCATGY 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 5 cut(s) 71, 215, 1193, 1258, 1392
PflMI CCANNNNNTGG 1 cut(s) 1622
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 5 cut(s) 66, 512, 678, 681, 943
PleI GAGTC 5 cut(s) 536, 1040, 1052, 1292, 1331
PpsI GAGTC 5 cut(s) 536, 1040, 1052, 1292, 1331
PpuMI RGGWCCY 1 cut(s) 660
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 36, 1261
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 36, 1261
PspN4I GGNNCC 5 cut(s) 661, 1473, 1505, 1515, 1614
PspPI GGNCC 5 cut(s) 15, 431, 628, 660, 1084
PspPPI RGGWCCY 1 cut(s) 660
PstI CTGCAG 1 cut(s) 331
PsuI RGATCY 2 cut(s) 953, 1513
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 189, 1097
RsaNI GTAC 2 cut(s) 188, 1096
RseI CAYNNNNRTG 1 cut(s) 778
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 5 cut(s) 9, 246, 375, 708, 915
SatI GCNGC 5 cut(s) 65, 511, 677, 680, 942
Sau3AI GATC 6 cut(s) 400, 953, 1180, 1513, 1531, 1570
Sau96I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 5 cut(s) 536, 1040, 1052, 1292, 1331
ScrFI CCNGG 3 cut(s) 38, 658, 1263
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 8 cut(s) 148, 301, 643, 842, 1345, 1423, 1445, 1486
SfcI CTRYAG 2 cut(s) 327, 1236
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 778
Sse9I AATT 5 cut(s) 637, 848, 1208, 1280, 1350
SsiI CCGC 3 cut(s) 511, 869, 937
SspMI CTAG 4 cut(s) 191, 650, 1500, 1620
StyD4I CCNGG 3 cut(s) 36, 656, 1261
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 977, 1130
TaqI TCGA 3 cut(s) 883, 1314, 1348
TasI AATT 5 cut(s) 637, 848, 1208, 1280, 1350
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 5 cut(s) 71, 215, 1193, 1258, 1392
Tru1I TTAA 5 cut(s) 9, 246, 375, 708, 915
Tru9I TTAA 5 cut(s) 9, 246, 375, 708, 915
TscAI CASTG 6 cut(s) 82, 182, 982, 1086, 1135, 1393
TseFI GTSAC 3 cut(s) 265, 752, 1478
TseI GCWGC 4 cut(s) 64, 676, 679, 941
Tsp45I GTSAC 3 cut(s) 265, 752, 1478
TspDTI ATGAA 5 cut(s) 741, 804, 913, 1056, 1535
TspRI CASTG 6 cut(s) 82, 182, 982, 1086, 1135, 1393
Van91I CCANNNNNTGG 1 cut(s) 1622
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 660
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 2 cut(s) 848, 1280
XceI RCATGY 1 cut(s) 686
XspI CTAG 4 cut(s) 191, 650, 1500, 1620
ZrmI AGTACT 1 cut(s) 1097
Zsp2I ATGCAT 2 cut(s) 1335, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.