MD16G1063000.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014264
Physical Location & Seq
Forward (+)
4469878 .. 4472881
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1063000.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGGGATTCAAAAGGCCCTTTGATGATGTCGAGTTCCAGGAGCTTCCTTATAAGCACTCAAGACAGCATGAATTCGGTGATAGGCGCTCACCATTTTCTGATGCTGTTCCTTGTAATGGCGCTCCCCGAAAAACTTGTGTTTCAGGGGAGAATCGGAATGGTGATTGTAAATCTCAGTGGCTTGACATTCTTGAAAAATACAGTGTTGCTGAAGGTTCAACATCTGTCAACAAGGGTTGTGCTTCCTTCTCATCGGTAACTAGGAGTTGTGGTGAAGAAGATGTGCGGTCTGGACCAGATGCTTATTCAACTCCTACTGAGGATTTCAAATTTGACTTCCCAAGGAGAACATGTGTTCCTTGCAAGGATGCTTATTCTTCTTTGTTTGACTGCTCTCCAAGAAAACAAGTTCCTGTTGGACCAGATCATCAGGCCATTATCCCCACTTGGAGTGGACGCATGAATTTGTCGGATCAGAAAGATGAGATTAATAATGACAGTGAGGAAAAGCTTTTAGGAACTTGTGTCATTCCAATGCCTGTGTCAGACCTATCACCTCTTGAGTGTGATAAGGTTGGACTTGGTCGAACAGATTGTAGCTGCCTGGACGCAGGTTCAGTCAGGTGTGTGCGACAGCATGTCATGGAAGCACGGGAAGAACTTAGAAGAACCCTTGGAAATGAAAAGTTTGTGAAGTTGGGGTTTTGTGACATGGGGGAGGAAGTGGCACGACGATGGAGTGAAGAAGAAGAGCAGACCTTTCTTGAGGTTATTTACTCCAATCCTGCATCATTGAGGAGGAAGTTTTGGAAGCAGTTGTCTGCAGTGTTCCCTTCTCGAAGTAAAAGGGAACTGATCAGCTATTATTTTAATGTGTTCATGCTTCGCACGCGGGGTGCTCAGAACAGGTCTAGTATACTAGACATAGATAGTGATGATGATGAGTGGCATGTAAACGATGGGGGTTCCAATGACGGGAGAATTGCTGAAGATGATGAAGACTCCGTTGTTGAGTCTCCTTATTATCAAGGTGATCATTTGGGCCATGAAGAGGATTACTCCGAAGAAGATAGTAGTGATGATGATGATGGTGACGGTGATGGTGATGTGGGGCATGTTGGAGGAGATTCTAGCGAAGAAGATGGCGGGATAGATCATGTGGCACAATCATACATGCTGAACTCAGTTAACGAAGGAAAGTTTGATACAGTTGGGGATTGGGAAAATAATTCAGGGTGTACTGGAGAGGAATTTGATTTCCAAGATGACTCGTGCGTATCTTTCGAATTTCAGTCCTATATGCATGACAGCAAATGCTTGGATAGCCAACCGGATGCATCCGGTGATGTAGCTGGTCATGCATATTTATCGGAGCCTTGCAACGCTAAAGTTTGGGACGCCAGATTCACGGTGGACACCATGAAAGGCGATGATCTACTGCCGACGTGGAGTATGATTGAAGGCATATTCGATCAAGGCATGGAGGATTACAGGATGAAGGATGAGCGCAAGGCTCCAGCTGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

510

Amino Acids

57.01

Weight (kDa)

4.45

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 1523
AccI GTMKAC 1 cut(s) 916
AccII CGCG 1 cut(s) 892
AciI CCGC 3 cut(s) 286, 892, 1146
AclWI GGATC 1 cut(s) 480
AcsI RAATTY 5 cut(s) 71, 329, 463, 1250, 1286
AcuI CTGAAG 2 cut(s) 231, 1008
AcyI GRCGYC 1 cut(s) 1398
AfaI GTAC 1 cut(s) 1240
AfiI CCNNNNNNNGG 4 cut(s) 116, 975, 1051, 1523
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 6 cut(s) 10, 194, 219, 309, 328, 1460
AhdI GACNNNNNGTC 1 cut(s) 638
AjiI CACGTC 1 cut(s) 1446
AjnI CCWGG 2 cut(s) 36, 603
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 6 cut(s) 43, 511, 600, 861, 1352, 1520
AluI AGCT 6 cut(s) 43, 511, 600, 861, 1352, 1520
Alw21I GWGCWC 1 cut(s) 901
Alw26I GTCTC 1 cut(s) 1020
AlwI GGATC 1 cut(s) 480
AoxI GGCC 3 cut(s) 14, 432, 1042
ApeKI GCWGC 1 cut(s) 600
ApoI RAATTY 5 cut(s) 71, 329, 463, 1250, 1286
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 3 cut(s) 87, 122, 1509
AspS9I GGNCC 4 cut(s) 15, 293, 419, 1042
AsuII TTCGAA 1 cut(s) 1284
AvaII GGWCC 2 cut(s) 293, 419
BauI CACGAG 1 cut(s) 1270
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 901
BbvI GCAGC 1 cut(s) 587
BccI CCATC 5 cut(s) 729, 953, 1082, 1094, 1136
BcgI CGANNNNNNTGC 2 cut(s) 1350, 1384
BciT130I CCWGG 2 cut(s) 38, 605
BclI TGATCA 2 cut(s) 855, 1033
BcoDI GTCTC 1 cut(s) 1020
BfaI CTAG 5 cut(s) 261, 912, 920, 1131, 1528
BfmI CTRYAG 1 cut(s) 822
BfoI RGCGCY 2 cut(s) 88, 123
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 1 cut(s) 601
BlsI GCNGC 1 cut(s) 602
Bme1390I CCNGG 2 cut(s) 38, 605
Bme18I GGWCC 2 cut(s) 293, 419
BmeRI GACNNNNNGTC 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 1446
BmgT120I GGNCC 4 cut(s) 15, 293, 419, 1042
BmiI GGNNCC 3 cut(s) 967, 1374, 1515
BmrFI CCNGG 2 cut(s) 38, 605
BmsI GCATC 6 cut(s) 91, 289, 358, 797, 1324, 1346
BpiI GAAGAC 1 cut(s) 1005
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
BpmI CTGGAG 2 cut(s) 1263, 1500
Bpu14I TTCGAA 1 cut(s) 1284
BpuEI CTTGAG 3 cut(s) 43, 581, 785
BsaHI GRCGYC 1 cut(s) 1398
BsaJI CCNNGG 2 cut(s) 341, 673
BsaWI WCCGGW 2 cut(s) 1330, 1340
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 337, 367
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 975, 1051, 1523
Bse1I ACTGG 1 cut(s) 1246
BseBI CCWGG 2 cut(s) 38, 605
BseDI CCNNGG 2 cut(s) 341, 673
BseGI GGATG 5 cut(s) 373, 1337, 1339, 1500, 1507
BseLI CCNNNNNNNGG 4 cut(s) 116, 975, 1051, 1523
BseMII CTCAG 4 cut(s) 188, 309, 914, 1197
BseNI ACTGG 1 cut(s) 1246
BseRI GAGGAG 2 cut(s) 811, 1137
BseXI GCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 3 cut(s) 16, 434, 1044
BsiHKAI GWGCWC 1 cut(s) 901
BsiSI CCGG 2 cut(s) 1331, 1341
BslFI GGGAC 1 cut(s) 1409
BslI CCNNNNNNNGG 4 cut(s) 116, 975, 1051, 1523
BsmAI GTCTC 1 cut(s) 1020
BsmFI GGGAC 1 cut(s) 1409
BsnI GGCC 3 cut(s) 16, 434, 1044
Bsp119I TTCGAA 1 cut(s) 1284
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
BspACI CCGC 3 cut(s) 286, 892, 1146
BspANI GGCC 3 cut(s) 16, 434, 1044
BspCNI CTCAG 4 cut(s) 187, 310, 913, 1196
BspFNI CGCG 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 967, 1374, 1515
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 480
BspQI GCTCTTC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 1284
BsrI ACTGG 1 cut(s) 1246
BssECI CCNNGG 2 cut(s) 341, 673
BssMI GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
BssNAI GTATAC 1 cut(s) 917
BssNI GRCGYC 1 cut(s) 1398
BssSI CACGAG 1 cut(s) 1270
BssT1I CCWWGG 2 cut(s) 341, 673
Bst1107I GTATAC 1 cut(s) 917
Bst2BI CACGAG 1 cut(s) 1270
Bst2UI CCWGG 2 cut(s) 38, 605
Bst4CI ACNGT 5 cut(s) 203, 500, 1097, 1210, 1411
Bst6I CTCTTC 2 cut(s) 744, 1044
BstACI GRCGYC 1 cut(s) 1398
BstBI TTCGAA 1 cut(s) 1284
BstC8I GCNNGC 1 cut(s) 890
BstDEI CTNAG 5 cut(s) 174, 318, 662, 900, 1183
BstF5I GGATG 5 cut(s) 373, 1337, 1339, 1500, 1507
BstFNI CGCG 1 cut(s) 892
BstH2I RGCGCY 2 cut(s) 88, 123
BstHHI GCGC 3 cut(s) 87, 122, 1509
BstKTI GATC 7 cut(s) 427, 475, 858, 1036, 1156, 1435, 1474
BstMAI GTCTC 1 cut(s) 1020
BstMBI GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
BstMWI GCNNNNNNNGC 3 cut(s) 889, 1323, 1358
BstNI CCWGG 2 cut(s) 38, 605
BstNSI RCATGY 5 cut(s) 354, 641, 953, 1118, 1177
BstSCI CCNGG 2 cut(s) 36, 603
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 1005
BstZ17I GTATAC 1 cut(s) 917
BsuRI GGCC 3 cut(s) 16, 434, 1044
BtgZI GCGATG 1 cut(s) 1443
BtrI CACGTC 1 cut(s) 1446
BtsCI GGATG 5 cut(s) 373, 1337, 1339, 1500, 1507
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 4 cut(s) 182, 208, 505, 831
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 890
CfoI GCGC 3 cut(s) 87, 122, 1509
Cfr13I GGNCC 4 cut(s) 15, 293, 419, 1042
CseI GACGC 3 cut(s) 465, 617, 1406
Csp6I GTAC 1 cut(s) 1239
CviQI GTAC 1 cut(s) 1239
DdeI CTNAG 5 cut(s) 174, 318, 662, 900, 1183
DpnI GATC 7 cut(s) 426, 474, 857, 1035, 1155, 1434, 1473
DpnII GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
DriI GACNNNNNGTC 1 cut(s) 638
Eam1104I CTCTTC 2 cut(s) 744, 1044
Eam1105I GACNNNNNGTC 1 cut(s) 638
EarI CTCTTC 2 cut(s) 744, 1044
Eco130I CCWWGG 2 cut(s) 341, 673
Eco47I GGWCC 2 cut(s) 293, 419
Eco57I CTGAAG 2 cut(s) 231, 1008
EcoO109I RGGNCCY 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 36, 603
EcoT14I CCWWGG 2 cut(s) 341, 673
EcoT22I ATGCAT 3 cut(s) 1305, 1339, 1363
ErhI CCWWGG 2 cut(s) 341, 673
FaqI GGGAC 1 cut(s) 1409
FauI CCCGC 2 cut(s) 885, 1139
FbaI TGATCA 2 cut(s) 855, 1033
FblI GTMKAC 1 cut(s) 916
Fnu4HI GCNGC 1 cut(s) 601
FokI GGATG 5 cut(s) 380, 1324, 1346, 1507, 1514
Fsp4HI GCNGC 1 cut(s) 601
FspBI CTAG 5 cut(s) 261, 912, 920, 1131, 1528
GlaI GCGC 3 cut(s) 86, 121, 1508
GluI GCNGC 1 cut(s) 601
GsuI CTGGAG 2 cut(s) 1263, 1500
HaeII RGCGCY 2 cut(s) 88, 123
HaeIII GGCC 3 cut(s) 16, 434, 1044
HapII CCGG 2 cut(s) 1331, 1341
HgaI GACGC 3 cut(s) 465, 617, 1406
HhaI GCGC 3 cut(s) 87, 122, 1509
Hin1I GRCGYC 1 cut(s) 1398
Hin6I GCGC 3 cut(s) 85, 120, 1507
HinP1I GCGC 3 cut(s) 85, 120, 1507
HincII GTYRAC 2 cut(s) 229, 1189
HindII GTYRAC 2 cut(s) 229, 1189
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 7 cut(s) 6, 151, 1001, 1013, 1127, 1268, 1404
HpaI GTTAAC 1 cut(s) 1189
HpaII CCGG 2 cut(s) 1331, 1341
Hpy166II GTNNAC 7 cut(s) 229, 455, 917, 955, 1189, 1239, 1414
Hpy188I TCNGA 8 cut(s) 100, 156, 472, 477, 547, 903, 1063, 1372
Hpy188III TCNNGA 6 cut(s) 60, 191, 291, 560, 764, 837
Hpy8I GTNNAC 7 cut(s) 229, 455, 917, 955, 1189, 1239, 1414
Hpy99I CGWCG 2 cut(s) 735, 1447
HpyAV CCTTC 6 cut(s) 206, 256, 843, 1187, 1454, 1492
HpyCH4III ACNGT 5 cut(s) 203, 500, 1097, 1210, 1411
HpyCH4IV ACGT 1 cut(s) 1445
HpyCH4V TGCA 7 cut(s) 363, 788, 824, 1303, 1337, 1361, 1380
HpyF10VI GCNNNNNNNGC 3 cut(s) 889, 1323, 1358
HpyF3I CTNAG 5 cut(s) 174, 318, 662, 900, 1183
HpySE526I ACGT 1 cut(s) 1445
Hsp92I GRCGYC 1 cut(s) 1398
HspAI GCGC 3 cut(s) 85, 120, 1507
Ksp22I TGATCA 2 cut(s) 855, 1033
KspAI GTTAAC 1 cut(s) 1189
Kzo9I GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 4 cut(s) 40, 127, 1372, 1519
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 6 cut(s) 91, 289, 358, 797, 1324, 1346
MaeI CTAG 5 cut(s) 261, 912, 920, 1131, 1528
MaeII ACGT 1 cut(s) 1445
MaeIII GTNAC 3 cut(s) 256, 707, 1091
MalI GATC 7 cut(s) 426, 474, 857, 1035, 1155, 1434, 1473
MboI GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 7 cut(s) 71, 329, 463, 981, 1228, 1250, 1286
MlyI GAGTC 3 cut(s) 995, 1022, 1262
MmeI TCCRAC 4 cut(s) 397, 450, 556, 1099
Mph1103I ATGCAT 3 cut(s) 1305, 1339, 1363
MseI TTAA 3 cut(s) 489, 870, 1188
MslI CAYNNNNRTG 2 cut(s) 533, 733
MspA1I CMGCKG 1 cut(s) 1520
MspI CCGG 2 cut(s) 1331, 1341
MspR9I CCNGG 2 cut(s) 38, 605
MvaI CCWGG 2 cut(s) 38, 605
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 3 cut(s) 889, 1323, 1358
NdeII GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
NlaIV GGNNCC 3 cut(s) 967, 1374, 1515
NmuCI GTSAC 2 cut(s) 707, 1091
NsiI ATGCAT 3 cut(s) 1305, 1339, 1363
NspI RCATGY 5 cut(s) 354, 641, 953, 1118, 1177
NspV TTCGAA 1 cut(s) 1284
PciI ACATGT 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 744
PfeI GAWTC 4 cut(s) 6, 151, 1127, 1404
PflFI GACNNNGTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 1523
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 1 cut(s) 602
PleI GAGTC 3 cut(s) 995, 1021, 1262
PpsI GAGTC 3 cut(s) 995, 1021, 1262
PscI ACATGT 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 489
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 36, 603
PspGI CCWGG 2 cut(s) 36, 603
PspN4I GGNNCC 3 cut(s) 967, 1374, 1515
PspPI GGNCC 4 cut(s) 15, 293, 419, 1042
PstI CTGCAG 1 cut(s) 826
PsyI GACNNNGTC 1 cut(s) 582
PvuII CAGCTG 1 cut(s) 1520
RsaI GTAC 1 cut(s) 1240
RsaNI GTAC 1 cut(s) 1239
RseI CAYNNNNRTG 2 cut(s) 533, 733
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 3 cut(s) 489, 870, 1188
SatI GCNGC 1 cut(s) 601
Sau3AI GATC 7 cut(s) 424, 472, 855, 1033, 1153, 1432, 1471
Sau96I GGNCC 4 cut(s) 15, 293, 419, 1042
SchI GAGTC 3 cut(s) 995, 1022, 1262
ScrFI CCNGG 2 cut(s) 38, 605
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 6 cut(s) 91, 289, 358, 797, 1324, 1346
SfcI CTRYAG 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 1284
SinI GGWCC 2 cut(s) 293, 419
SmiMI CAYNNNNRTG 2 cut(s) 533, 733
SmlI CTYRAG 3 cut(s) 58, 560, 764
SmoI CTYRAG 3 cut(s) 58, 560, 764
Sse9I AATT 7 cut(s) 71, 329, 463, 981, 1228, 1250, 1286
SsiI CCGC 3 cut(s) 286, 892, 1146
SspMI CTAG 5 cut(s) 261, 912, 920, 1131, 1528
StyD4I CCNGG 2 cut(s) 36, 603
StyI CCWWGG 2 cut(s) 341, 673
TaaI ACNGT 5 cut(s) 203, 500, 1097, 1210, 1411
TaiI ACGT 1 cut(s) 1448
TaqI TCGA 5 cut(s) 30, 586, 838, 1284, 1470
TasI AATT 7 cut(s) 71, 329, 463, 981, 1228, 1250, 1286
TatI WGTACW 1 cut(s) 1238
TfiI GAWTC 4 cut(s) 6, 151, 1127, 1404
Tru1I TTAA 3 cut(s) 489, 870, 1188
Tru9I TTAA 3 cut(s) 489, 870, 1188
TscAI CASTG 4 cut(s) 182, 208, 505, 831
TseFI GTSAC 2 cut(s) 707, 1091
TseI GCWGC 1 cut(s) 600
Tsp45I GTSAC 2 cut(s) 707, 1091
TspDTI ATGAA 8 cut(s) 84, 476, 696, 868, 1011, 1062, 1436, 1511
TspGWI ACGGA 1 cut(s) 994
TspRI CASTG 4 cut(s) 182, 208, 505, 831
Tth111I GACNNNGTC 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 1523
VpaK11BI GGWCC 2 cut(s) 293, 419
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 5 cut(s) 71, 329, 463, 1250, 1286
XceI RCATGY 5 cut(s) 354, 641, 953, 1118, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 1408
XmiI GTMKAC 1 cut(s) 916
XspI CTAG 5 cut(s) 261, 912, 920, 1131, 1528
Zsp2I ATGCAT 3 cut(s) 1305, 1339, 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.