pycom16g05520
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014264
Physical Location & Seq
Forward (+)
3551855 .. 3552931
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05520.1

Sequence Viewer

Length: 1077 bp
ATGAATTTGTTGGATCAGAAAGATGAGATTAAAAATGACAGTGAGGAAAAGCTTTTAGGAACATTTGTCATTCCAATGCCTGTTTCAGACCTATCAGCACTTGAGTGTGATAAGGTTGGACTTGGTCGAACAGATTGTAGCTGCCTGGATGCAGGTTCAGTCAGGTGTGTGCGAAAGCATGTCATGGAAGCACGGGAAGAACTTAGAAGAACCCTTGGAAACGAAAAGTTTGTGAAGTTGGGGTTTTGTGACATGGGGGAGGAAGTGGCACGACGATGGAGTGAAGAAGAAGAGCAGACCTTTCTTGAGGTTGTTTACTCCAATCCTGCATCATTGGGGAGGAAGTTTTGGAAGCAGTTGTCTGCAGTGTTCCCTTCTCGAAGTAAAAGGGAACTGATCAGCTATTATTTTAATGTGTTCATGCTTCGCACGCGGGGTGCTCAGAACAGGTCTAGTATACTAGACATAGATAGTGATGATGATGAGTGGCATGTAAACGATGGGGGTTCCAATGACGTGAGAATTGCTGAAGATGATGAAGACTCTGTTATTGAGTCTCCTTATTATCAAGGTGATCATTTGGACCATGAAGAGGATTACTCAGAAGCAGATAGTAGTGATGATGATGGCAGTGACGGTGATGGTGATGTGGGGCATGTTGGAGGAGATTCTAGCGAAGAAGATGGCGGGATAGATCATGTAGCACAATCATACATGCTGAACTCAGTTAACGAAGGAAAGTTTGATACAGTTGGGAATTGGGAAAAGAATTCAGCGTGTACCGGAGAGGAATTTGATTTCCAAGATGACTCGTGCGTATCTTTCGAATTTCAGTCCTATATGCATGACTCTCACAGCAAATGCTTGGATAGCCAACCGGATGCATCCGGTGTTGTAGCTGGTCATGCATATTTATTGGAGCCTTGCAATGCTAAAGTTTGGGACGCCAGATTCACGGTGGACACCATGAAAGGCGATGATCTACTGCCGACGTGGAGTATGATTGAAGACATATTCGATCAAGGCATGGAGGATTACAGGATGACGGATGAGCGCAAGGCTCCAGCTGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

359

Amino Acids

40.18

Weight (kDa)

4.29

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 433
AciI CCGC 2 cut(s) 433, 687
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 4 cut(s) 4, 769, 791, 827
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 945
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 592, 1070
AgsI TTSAA 1 cut(s) 1007
AjiI CACGTC 2 cut(s) 517, 993
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AleI CACNNNNGTG 1 cut(s) 103
AluBI AGCT 5 cut(s) 52, 141, 402, 899, 1067
AluI AGCT 5 cut(s) 52, 141, 402, 899, 1067
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 4 cut(s) 4, 769, 791, 827
AspLEI GCGC 1 cut(s) 1056
AspS9I GGNCC 1 cut(s) 583
AsuHPI GGTGA 3 cut(s) 584, 650, 656
AsuII TTCGAA 1 cut(s) 825
AvaII GGWCC 1 cut(s) 583
BauI CACGAG 1 cut(s) 811
BbsI GAAGAC 2 cut(s) 546, 1014
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 128
BccI CCATC 5 cut(s) 270, 494, 620, 635, 677
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 2 cut(s) 396, 574
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 4 cut(s) 453, 461, 672, 1075
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 583
BmgBI CACGTC 2 cut(s) 517, 993
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 3 cut(s) 508, 921, 1062
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 4 cut(s) 139, 338, 871, 893
BpiI GAAGAC 2 cut(s) 546, 1014
BplI GAGNNNNNCTC 2 cut(s) 584, 616
BpmI CTGGAG 1 cut(s) 1047
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 122, 326
BsaHI GRCGYC 1 cut(s) 945
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 3 cut(s) 782, 877, 887
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 1070
Bse3DI GCAATG 1 cut(s) 934
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 5 cut(s) 154, 884, 886, 1047, 1054
BseLI CCNNNNNNNGG 2 cut(s) 592, 1070
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 3 cut(s) 455, 615, 738
BseRI GAGGAG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 3 cut(s) 783, 878, 888
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 2 cut(s) 592, 1070
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 956
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
BspACI CCGC 2 cut(s) 433, 687
BspCNI CTCAG 3 cut(s) 454, 614, 737
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 508, 921, 1062
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 934
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
BssNAI GTATAC 1 cut(s) 458
BssNI GRCGYC 1 cut(s) 945
BssSI CACGAG 1 cut(s) 811
BssT1I CCWWGG 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 4 cut(s) 41, 638, 751, 958
Bst6I CTCTTC 2 cut(s) 285, 585
BstACI GRCGYC 1 cut(s) 945
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 4 cut(s) 203, 441, 601, 724
BstF5I GGATG 5 cut(s) 154, 884, 886, 1047, 1054
BstFNI CGCG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 6 cut(s) 16, 399, 577, 697, 982, 1021
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 430, 870, 905
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 4 cut(s) 182, 494, 659, 718
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 546, 1014
BstZ17I GTATAC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 990
BtrI CACGTC 2 cut(s) 517, 993
BtsCI GGATG 5 cut(s) 154, 884, 886, 1047, 1054
BtsI GCAGTG 2 cut(s) 372, 637
BtsIMutI CAGTG 3 cut(s) 46, 372, 637
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 431
CfoI GCGC 1 cut(s) 1056
Cfr13I GGNCC 1 cut(s) 583
CseI GACGC 1 cut(s) 953
Csp6I GTAC 1 cut(s) 780
CviJI RGCY 9 cut(s) 52, 141, 402, 873, 899, 922, 1061, 1067, 1074
CviKI_1 RGCY 9 cut(s) 52, 141, 402, 873, 899, 922, 1061, 1067, 1074
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 4 cut(s) 203, 441, 601, 724
DpnI GATC 6 cut(s) 15, 398, 576, 696, 981, 1020
DpnII GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
Eam1104I CTCTTC 2 cut(s) 285, 585
EarI CTCTTC 2 cut(s) 285, 585
Eco130I CCWWGG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 214
EcoT22I ATGCAT 3 cut(s) 846, 886, 910
ErhI CCWWGG 1 cut(s) 214
FaqI GGGAC 1 cut(s) 956
FauI CCCGC 2 cut(s) 426, 680
FbaI TGATCA 2 cut(s) 396, 574
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 5 cut(s) 161, 871, 893, 1054, 1061
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 4 cut(s) 453, 461, 672, 1075
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 1047
HapII CCGG 3 cut(s) 783, 878, 888
HgaI GACGC 1 cut(s) 953
HhaI GCGC 1 cut(s) 1056
Hin1I GRCGYC 1 cut(s) 945
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 6 cut(s) 542, 554, 668, 809, 848, 951
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 3 cut(s) 783, 878, 888
HphI GGTGA 3 cut(s) 584, 650, 656
Hpy166II GTNNAC 6 cut(s) 316, 458, 496, 730, 780, 961
Hpy188I TCNGA 4 cut(s) 18, 88, 444, 604
Hpy188III TCNNGA 2 cut(s) 305, 378
Hpy8I GTNNAC 6 cut(s) 316, 458, 496, 730, 780, 961
Hpy99I CGWCG 2 cut(s) 276, 994
HpyAV CCTTC 2 cut(s) 384, 728
HpyCH4III ACNGT 4 cut(s) 41, 638, 751, 958
HpyCH4IV ACGT 2 cut(s) 516, 992
HpyCH4V TGCA 7 cut(s) 152, 329, 365, 844, 884, 908, 927
HpyF10VI GCNNNNNNNGC 3 cut(s) 430, 870, 905
HpyF3I CTNAG 4 cut(s) 203, 441, 601, 724
HpySE526I ACGT 2 cut(s) 516, 992
Hsp92I GRCGYC 1 cut(s) 945
HspAI GCGC 1 cut(s) 1054
Ksp22I TGATCA 2 cut(s) 396, 574
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 2 cut(s) 919, 1066
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 4 cut(s) 139, 338, 871, 893
MaeI CTAG 4 cut(s) 453, 461, 672, 1075
MaeII ACGT 2 cut(s) 516, 992
MaeIII GTNAC 2 cut(s) 248, 632
MalI GATC 6 cut(s) 15, 398, 576, 696, 981, 1020
MboI GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 6 cut(s) 4, 522, 757, 769, 791, 827
MlyI GAGTC 4 cut(s) 536, 563, 803, 842
MmeI TCCRAC 2 cut(s) 97, 640
MnlI CCTC 8 cut(s) 37, 253, 301, 333, 586, 656, 781, 1024
Mph1103I ATGCAT 3 cut(s) 846, 886, 910
MseI TTAA 3 cut(s) 30, 411, 729
MslI CAYNNNNRTG 3 cut(s) 74, 103, 274
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 3 cut(s) 783, 878, 888
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 430, 870, 905
NdeII GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
NlaIV GGNNCC 3 cut(s) 508, 921, 1062
NmuCI GTSAC 2 cut(s) 248, 632
NsiI ATGCAT 3 cut(s) 846, 886, 910
NspI RCATGY 4 cut(s) 182, 494, 659, 718
NspV TTCGAA 1 cut(s) 825
OliI CACNNNNGTG 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 668, 951
PflFI GACNNNGTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 1070
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 4 cut(s) 536, 562, 803, 842
PpsI GAGTC 4 cut(s) 536, 562, 803, 842
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 3 cut(s) 508, 921, 1062
PspPI GGNCC 1 cut(s) 583
PstI CTGCAG 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 1067
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 3 cut(s) 74, 103, 274
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 30, 411, 729
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 6 cut(s) 13, 396, 574, 694, 979, 1018
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 4 cut(s) 536, 563, 803, 842
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 4 cut(s) 139, 338, 871, 893
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 1 cut(s) 583
SmiMI CAYNNNNRTG 3 cut(s) 74, 103, 274
SmlI CTYRAG 2 cut(s) 101, 305
SmoI CTYRAG 2 cut(s) 101, 305
Sse9I AATT 6 cut(s) 4, 522, 757, 769, 791, 827
SsiI CCGC 2 cut(s) 433, 687
SspMI CTAG 4 cut(s) 453, 461, 672, 1075
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 4 cut(s) 41, 638, 751, 958
TaiI ACGT 2 cut(s) 519, 995
TaqI TCGA 4 cut(s) 127, 379, 825, 1017
TasI AATT 6 cut(s) 4, 522, 757, 769, 791, 827
TfiI GAWTC 2 cut(s) 668, 951
Tru1I TTAA 3 cut(s) 30, 411, 729
Tru9I TTAA 3 cut(s) 30, 411, 729
TscAI CASTG 3 cut(s) 46, 372, 637
TseFI GTSAC 2 cut(s) 248, 632
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 2 cut(s) 248, 632
TspDTI ATGAA 5 cut(s) 17, 409, 552, 603, 983
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 3 cut(s) 46, 372, 637
Tth111I GACNNNGTC 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 4 cut(s) 4, 769, 791, 827
XceI RCATGY 4 cut(s) 182, 494, 659, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XmiI GTMKAC 1 cut(s) 457
XspI CTAG 4 cut(s) 453, 461, 672, 1075
Zsp2I ATGCAT 3 cut(s) 846, 886, 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.