Rh4DG368500
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014264
Physical Location & Seq
Forward (+)
58776780 .. 58780029
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG368500.1

Sequence Viewer

Length: 1623 bp
ATGGGATTTAAAAGGCCCTTTGATGATGTGGACTTCCAGGAGCTTCCTTATAAGCATTCAAGGCAGCTTGATTCCAGTGATAAACGCTCTCCATTTTCTGATGTTGTTTCTTGTTATAGTGCACCCGAAAAACCGTATGTTTCAGGTGAGGAAGGGGATGCCCTTTGTAAAACTCAGTGGTTTGAGGTACTAGAAAAGTATAATGTTGGTAAAGATTCAACAGCTGTCAATAAAGGTTGTGTGATTAATGCTGCCTCTGCATTGGTCACCAGCAGTTGTGGTGAAGAAGACATTGGTTCTGGTGGACAAGATGCTTCTTCACCTCCTGCAGAGTATTTTGAATATGACTGCCCAAGGAGAGCGTTTGTTCCTTTTAAGGATGATTACTCTTCTTTGTTGGATCGCTCTCCAAGAAAACAAGTTCCTGTTGGGCCAAATCATCAAGCCAGTATTCCATCATGGAGTGGACACTCTAAAAAGTTGGATGAGGAAGATGGGGGTAATCTCAGCCGCTTTTCCTTGCATTTGATAACTGATTATGACTCTGAGGAAAGGCTTTTGGGAACTGCTGTTATTCCAATGCCTGATGTGAACCTATCACCTCCAGAGTGCGATAAGGTTGGGCAGGGCCGAACAAATTGTAAATGCCTAGATGCCGGGACCTTCAGGTGTGTGCAGCAGCATGTCATGGAAGCACGGGAAGACCTTAAAAGAAATCTTGGAAATGAAAAGTTTGTGAAGTTGGGTTTATGTGACATGGGAGAGGTAGTAGCACGAAGATGGAGTGATGAAGAAGAGCAGGCTTTTCACGATGTTGTTTACTCCAATCCTGCATCATTGGGTAGAAAATTTTGGAAGCATTTGTCTGCAGTGTTCCCTTCTCGAAGTAAAAGGGAACTGGTCAGCTATTATTTTAATGTGTTCATGCTTCGTAGGCGGGCTGCTCAGAACAGATCTAATACTTTAGAAATAGACAGTGATGATGATGAGTGGCATGGAAGCTATGGAAGTGCCAATGGTGGTATAGTTGCAGAAGATGATGAAGACTCTGTTATTGACTCTGTTGAGGATGGTCAAGCGGTGGGCCATAGAGAGTACTCTGAAGAAGATGATAGCGATGATGATGACAGTGATGGTGATGATTATGTGGGATATGGAGAAGATGGTGGGATGGATCATATAGGAGAATCATACAGGCTGAAATTGGTTGATGAAGGAAAATATGATACTATAGCTCAGAATGGGGAGAAGATTCCAGGGTGTTCTGAGGAGGAATTTGGTTATCAAGATGACTCATGCGTATCTTTCGAGTTTCAGCCCTATATGCATGACTCTTGTGGTCGAATTGATGCTGAACCTGCTGGTGGTGCTTTACAAGGCACTGGATTCAAGGACGAGCATAGCCAAAGCTTGCGTAGCCAAGACGATGCATCAAGTGATGTAGTTGGTCATGGATATCTATTGGAGCCTTGTGACGCTAAAGTTTGGGATGCTAGGTTCCCAATGGATCCCATGAAAGGTATTGATCTTCTACCTACATGGAGTATGATTGAGGACATATTTGATCAAGGCATGGGGGATTACAAGATGAGGGATGACCAAAAGGCACCAGCTAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

540

Amino Acids

60.11

Weight (kDa)

4.48

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 1366
AccB1I GGYRCC 1 cut(s) 1606
AccB7I CCANNNNNTGG 1 cut(s) 1616
AciI CCGC 3 cut(s) 511, 937, 1079
AclWI GGATC 4 cut(s) 408, 1182, 1502, 1515
AcsI RAATTY 2 cut(s) 848, 1274
AcuI CTGAAG 2 cut(s) 649, 1122
AfaI GTAC 2 cut(s) 189, 1097
AfiI CCNNNNNNNGG 3 cut(s) 1364, 1517, 1616
AgsI TTSAA 4 cut(s) 60, 219, 341, 1390
AjnI CCWGG 2 cut(s) 36, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AloI GAACNNNNNNTCC 2 cut(s) 1481, 1513
AluBI AGCT 8 cut(s) 43, 67, 224, 906, 1002, 1235, 1410, 1613
AluI AGCT 8 cut(s) 43, 67, 224, 906, 1002, 1235, 1410, 1613
Alw21I GWGCWC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 4 cut(s) 408, 1182, 1502, 1515
AoxI GGCC 4 cut(s) 14, 431, 628, 1084
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 64, 251, 676, 679, 941
ApoI RAATTY 2 cut(s) 848, 1274
AseI ATTAAT 1 cut(s) 246
AspS9I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 6 cut(s) 158, 259, 293, 312, 591, 1148
AvaII GGWCC 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 1507
BanI GGYRCC 1 cut(s) 1606
BbsI GAAGAC 3 cut(s) 294, 708, 1050
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 76, 238, 688, 691, 928
BccI CCATC 7 cut(s) 463, 488, 774, 1064, 1127, 1157, 1165
BciT130I CCWGG 2 cut(s) 38, 1257
BclI TGATCA 1 cut(s) 1564
BcnI CCSGG 1 cut(s) 658
BfaI CTAG 4 cut(s) 191, 650, 1494, 1614
BfmI CTRYAG 3 cut(s) 327, 867, 1230
BfuAI ACCTGC 1 cut(s) 1366
BglII AGATCT 1 cut(s) 953
BisI GCNGC 6 cut(s) 65, 252, 511, 677, 680, 942
BlsI GCNGC 6 cut(s) 66, 253, 512, 678, 681, 943
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 3 cut(s) 38, 658, 1257
Bme18I GGWCC 1 cut(s) 660
BmgT120I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
BmiI GGNNCC 5 cut(s) 661, 1467, 1499, 1509, 1608
BmrFI CCNGG 3 cut(s) 38, 658, 1257
BmsI GCATC 8 cut(s) 148, 301, 643, 842, 1339, 1417, 1439, 1480
BpiI GAAGAC 3 cut(s) 294, 708, 1050
BpmI CTGGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 353, 1256
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 3 cut(s) 1364, 1517, 1616
Bse1I ACTGG 4 cut(s) 75, 447, 903, 1387
BseBI CCWGG 2 cut(s) 38, 1257
BseDI CCNNGG 2 cut(s) 353, 1256
BseGI GGATG 7 cut(s) 163, 385, 490, 1075, 1176, 1495, 1600
BseLI CCNNNNNNNGG 3 cut(s) 1364, 1517, 1616
BseMII CTCAG 6 cut(s) 188, 520, 537, 959, 1250, 1257
BseNI ACTGG 4 cut(s) 75, 447, 903, 1387
BseRI GAGGAG 1 cut(s) 1283
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 5 cut(s) 76, 238, 688, 691, 928
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 4 cut(s) 16, 433, 630, 1086
BshNI GGYRCC 1 cut(s) 1606
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 657
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 1364, 1517, 1616
BsmFI GGGAC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 4 cut(s) 16, 433, 630, 1086
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
BspACI CCGC 3 cut(s) 511, 937, 1079
BspANI GGCC 4 cut(s) 16, 433, 630, 1086
BspCNI CTCAG 6 cut(s) 187, 519, 538, 958, 1249, 1258
BspLI GGNNCC 5 cut(s) 661, 1467, 1499, 1509, 1608
BspMAI CTGCAG 2 cut(s) 331, 871
BspMI ACCTGC 1 cut(s) 1366
BspPI GGATC 4 cut(s) 408, 1182, 1502, 1515
BspQI GCTCTTC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 1606
BsrI ACTGG 4 cut(s) 75, 447, 903, 1387
BssECI CCNNGG 2 cut(s) 353, 1256
BssMI GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 2 cut(s) 38, 1257
Bst4CI ACNGT 3 cut(s) 135, 977, 1130
Bst6I CTCTTC 2 cut(s) 394, 789
BstC8I GCNNGC 3 cut(s) 801, 939, 1412
BstDEI CTNAG 6 cut(s) 174, 506, 546, 945, 1236, 1266
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 7 cut(s) 163, 385, 490, 1075, 1176, 1495, 1600
BstKTI GATC 6 cut(s) 403, 956, 1177, 1510, 1528, 1567
BstMBI GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
BstMWI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1324, 1358, 1367, 1416
BstNI CCWGG 2 cut(s) 38, 1257
BstNSI RCATGY 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 36, 656, 1255
BstSFI CTRYAG 3 cut(s) 327, 867, 1230
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 5 cut(s) 76, 238, 688, 691, 928
BstV2I GAAGAC 3 cut(s) 294, 708, 1050
BstX2I RGATCY 2 cut(s) 953, 1507
BstYI RGATCY 2 cut(s) 953, 1507
BsuRI GGCC 4 cut(s) 16, 433, 630, 1086
BtgZI GCGATG 1 cut(s) 1131
BtsCI GGATG 7 cut(s) 163, 385, 490, 1075, 1176, 1495, 1600
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 6 cut(s) 82, 182, 876, 982, 1135, 1380
BveI ACCTGC 1 cut(s) 1366
Cac8I GCNNGC 3 cut(s) 801, 939, 1412
Cfr13I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
CseI GACGC 1 cut(s) 1484
Csp6I GTAC 2 cut(s) 188, 1096
CviQI GTAC 2 cut(s) 188, 1096
DdeI CTNAG 6 cut(s) 174, 506, 546, 945, 1236, 1266
DpnI GATC 6 cut(s) 402, 955, 1176, 1509, 1527, 1566
DpnII GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 394, 789
EarI CTCTTC 2 cut(s) 394, 789
Eco130I CCWWGG 1 cut(s) 353
Eco32I GATATC 1 cut(s) 1457
Eco47I GGWCC 1 cut(s) 660
Eco57I CTGAAG 2 cut(s) 649, 1122
Eco91I GGTNACC 1 cut(s) 265
EcoO109I RGGNCCY 2 cut(s) 15, 660
EcoO65I GGTNACC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 36, 1255
EcoRV GATATC 1 cut(s) 1457
EcoT14I CCWWGG 1 cut(s) 353
EcoT22I ATGCAT 2 cut(s) 1329, 1432
ErhI CCWWGG 1 cut(s) 353
FaqI GGGAC 1 cut(s) 673
FauI CCCGC 1 cut(s) 930
FbaI TGATCA 1 cut(s) 1564
Fnu4HI GCNGC 6 cut(s) 65, 252, 511, 677, 680, 942
FokI GGATG 7 cut(s) 170, 392, 497, 1082, 1183, 1502, 1607
Fsp4HI GCNGC 6 cut(s) 65, 252, 511, 677, 680, 942
FspBI CTAG 4 cut(s) 191, 650, 1494, 1614
GluI GCNGC 6 cut(s) 65, 252, 511, 677, 680, 942
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 4 cut(s) 16, 433, 630, 1086
HapII CCGG 1 cut(s) 657
HgaI GACGC 1 cut(s) 1484
HindIII AAGCTT 1 cut(s) 1408
HpaII CCGG 1 cut(s) 657
HphI GGTGA 6 cut(s) 158, 259, 293, 312, 591, 1148
Hpy166II GTNNAC 6 cut(s) 31, 122, 305, 467, 592, 820
Hpy188I TCNGA 6 cut(s) 100, 547, 948, 1102, 1239, 1267
Hpy188III TCNNGA 4 cut(s) 605, 809, 882, 1286
Hpy8I GTNNAC 6 cut(s) 31, 122, 305, 467, 592, 820
HpyAV CCTTC 4 cut(s) 146, 673, 888, 1208
HpyCH4III ACNGT 3 cut(s) 135, 977, 1130
HpyF10VI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1324, 1358, 1367, 1416
HpyF3I CTNAG 6 cut(s) 174, 506, 546, 945, 1236, 1266
Ksp22I TGATCA 1 cut(s) 1564
Kzo9I GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 40, 1465
Lsp1109I GCAGC 5 cut(s) 76, 238, 688, 691, 928
LweI GCATC 8 cut(s) 148, 301, 643, 842, 1339, 1417, 1439, 1480
MaeI CTAG 4 cut(s) 191, 650, 1494, 1614
MaeIII GTNAC 3 cut(s) 265, 752, 1472
MalI GATC 6 cut(s) 402, 955, 1176, 1509, 1527, 1566
MboI GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
MflI RGATCY 2 cut(s) 953, 1507
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 5 cut(s) 637, 848, 1202, 1274, 1344
MlyI GAGTC 5 cut(s) 536, 1040, 1052, 1286, 1325
MmeI TCCRAC 2 cut(s) 378, 462
Mph1103I ATGCAT 2 cut(s) 1329, 1432
MseI TTAA 5 cut(s) 9, 246, 375, 708, 915
MslI CAYNNNNRTG 1 cut(s) 778
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 3 cut(s) 38, 658, 1257
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 2 cut(s) 38, 1257
MwoI GCNNNNNNNGC 7 cut(s) 61, 257, 934, 1324, 1358, 1367, 1416
NciI CCSGG 1 cut(s) 658
NdeII GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
NlaIV GGNNCC 5 cut(s) 661, 1467, 1499, 1509, 1608
NmuCI GTSAC 3 cut(s) 265, 752, 1472
NsiI ATGCAT 2 cut(s) 1329, 1432
NspI RCATGY 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 5 cut(s) 71, 215, 1187, 1252, 1386
PflMI CCANNNNNTGG 1 cut(s) 1616
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 6 cut(s) 66, 253, 512, 678, 681, 943
PleI GAGTC 5 cut(s) 536, 1040, 1052, 1286, 1325
PpsI GAGTC 5 cut(s) 536, 1040, 1052, 1286, 1325
PpuMI RGGWCCY 1 cut(s) 660
PshBI ATTAAT 1 cut(s) 246
PsiI TTATAA 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 660
Psp6I CCWGG 2 cut(s) 36, 1255
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 36, 1255
PspN4I GGNNCC 5 cut(s) 661, 1467, 1499, 1509, 1608
PspPI GGNCC 5 cut(s) 15, 431, 628, 660, 1084
PspPPI RGGWCCY 1 cut(s) 660
PstI CTGCAG 2 cut(s) 331, 871
PsuI RGATCY 2 cut(s) 953, 1507
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 189, 1097
RsaNI GTAC 2 cut(s) 188, 1096
RseI CAYNNNNRTG 1 cut(s) 778
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 5 cut(s) 9, 246, 375, 708, 915
SatI GCNGC 6 cut(s) 65, 252, 511, 677, 680, 942
Sau3AI GATC 6 cut(s) 400, 953, 1174, 1507, 1525, 1564
Sau96I GGNCC 5 cut(s) 15, 431, 628, 660, 1084
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 5 cut(s) 536, 1040, 1052, 1286, 1325
ScrFI CCNGG 3 cut(s) 38, 658, 1257
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 8 cut(s) 148, 301, 643, 842, 1339, 1417, 1439, 1480
SfcI CTRYAG 3 cut(s) 327, 867, 1230
SinI GGWCC 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 778
Sse9I AATT 5 cut(s) 637, 848, 1202, 1274, 1344
SsiI CCGC 3 cut(s) 511, 937, 1079
SspMI CTAG 4 cut(s) 191, 650, 1494, 1614
StyD4I CCNGG 3 cut(s) 36, 656, 1255
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 3 cut(s) 135, 977, 1130
TaqI TCGA 3 cut(s) 883, 1308, 1342
TasI AATT 5 cut(s) 637, 848, 1202, 1274, 1344
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 1 cut(s) 513
TfiI GAWTC 5 cut(s) 71, 215, 1187, 1252, 1386
Tru1I TTAA 5 cut(s) 9, 246, 375, 708, 915
Tru9I TTAA 5 cut(s) 9, 246, 375, 708, 915
TscAI CASTG 6 cut(s) 82, 182, 876, 982, 1135, 1387
TseFI GTSAC 3 cut(s) 265, 752, 1472
TseI GCWGC 5 cut(s) 64, 251, 676, 679, 941
Tsp45I GTSAC 3 cut(s) 265, 752, 1472
TspDTI ATGAA 6 cut(s) 741, 804, 913, 1056, 1227, 1529
TspRI CASTG 6 cut(s) 82, 182, 876, 982, 1135, 1387
Van91I CCANNNNNTGG 1 cut(s) 1616
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 660
VspI ATTAAT 1 cut(s) 246
XapI RAATTY 2 cut(s) 848, 1274
XceI RCATGY 1 cut(s) 686
XspI CTAG 4 cut(s) 191, 650, 1494, 1614
ZrmI AGTACT 1 cut(s) 1097
Zsp2I ATGCAT 2 cut(s) 1329, 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.