Rorug04G0312000
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014264
Physical Location & Seq
Forward (+)
48775488 .. 48777417
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0312000.1

Sequence Viewer

Length: 1164 bp
ATGTTTCAAACATCAATTGGTCCGTCTGGTTCGAGCACTGGTTTCTTTCGCCCAGAAACTGCACAAGGCATATTTGTGAATTTTATGGACATTTACTATGACAATGGGTGCAAGCTGCCTTTTGCTGTTGCTCAAATATCTCCTCGCCAAGGCCTGTTGAGAGTCCGTGAGTTCACACTCTCGGAGATTGAGCACTTTGTTGATCCTGAAGACAAATCTCACCTGAAATTCCCCAGCGTTGAGAAGTTGGAACTTCTGATGTTCCCAAGGGATGAACAAAAGCCTGGGAAATCTGCAAGATTAATCTCAGTGGGTGAAGCGGTGCATTCTAAGATTGTGGAGAATGAAACTCTTGGCTACTTCATTGGGAGAGTATATCTCTTCCTCACTCGTCTGGGTATAGACAAGAACCATTTGAGGTTCAGGCAACACCTTGCTAGAGAAATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCCTATGGCTGGATTGAGTGCGTCGGTATTGCAGGTAGATCTGCATATGACTTGAAGGCTCATTCGGGGAAAAGTCGTCTCGAGGCACATGAACAACTTTCAGAACCAAGAGACGTGGAGAAATTGGTTATATCTCCGGTAAAGAAACAGATTGGCCCTGCTTTCGGGAAGAAGCAAAAGAATGTACTTGAAGCTTTGGAGGTTATGAATGAAGAAGAAATTTCAAAGATGAAGGCTGAGATAGACTCGAAAGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGCATCTATTAAGAGCAGTATGGTGACAATTTCAAAGGTTAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGCGGATTATATATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGCTTTAACCCACTTGTGGCGCCTTTTAAGTGCACGGTTTTCCCTCTGGTTCGGAACCAACAATTTGAGGCTGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATGGATACTACAGGTACCTCGATTGGGAAACGTTACGCACGTACTGATGAGCTCGGTGACTCGGTGTACCCTTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

387

Amino Acids

43.73

Weight (kDa)

7.19

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGTP_anticodon PF03129 330 - 380 5.6e-07 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
Acc36I ACCTGC 1 cut(s) 512
Acc65I GGTACC 1 cut(s) 1097
AccB1I GGYRCC 2 cut(s) 979, 1097
AciI CCGC 2 cut(s) 320, 883
AclI AACGTT 1 cut(s) 1114
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 4 cut(s) 79, 227, 708, 842
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 980
AfaI GTAC 4 cut(s) 675, 1099, 1126, 1151
AfiI CCNNNNNNNGG 6 cut(s) 149, 498, 653, 872, 976, 1107
AgsI TTSAA 6 cut(s) 8, 544, 680, 714, 813, 952
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 115, 683, 1135
AluI AGCT 3 cut(s) 115, 683, 1135
Alw21I GWGCWC 4 cut(s) 38, 195, 995, 1137
Alw26I GTCTC 4 cut(s) 479, 572, 594, 902
Alw44I GTGCAC 1 cut(s) 991
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 2 cut(s) 151, 643
ApaLI GTGCAC 1 cut(s) 991
ApeKI GCWGC 3 cut(s) 115, 458, 1064
ApoI RAATTY 4 cut(s) 79, 227, 708, 842
AseI ATTAAT 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 1097
AspLEI GCGC 1 cut(s) 982
AspS9I GGNCC 2 cut(s) 20, 644
AsuHPI GGTGA 4 cut(s) 212, 326, 814, 1151
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 995
BanI GGYRCC 2 cut(s) 979, 1097
BanII GRGCYC 1 cut(s) 1137
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 4 cut(s) 38, 195, 995, 1137
BbvI GCAGC 3 cut(s) 102, 445, 1051
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 1081
BcoDI GTCTC 4 cut(s) 479, 572, 594, 902
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 1092
BfoI RGCGCY 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 512
BfuI GTATCC 1 cut(s) 1081
BglII AGATCT 1 cut(s) 527
BisI GCNGC 3 cut(s) 116, 459, 1065
BlsI GCNGC 3 cut(s) 117, 460, 1066
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 569
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 20, 644
BmiI GGNNCC 3 cut(s) 981, 1016, 1099
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 2 cut(s) 463, 791
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 4 cut(s) 363, 395, 719, 751
Bpu10I CCTNAGC 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 1124
BsaHI GRCGYC 1 cut(s) 980
BsaJI CCNNGG 3 cut(s) 148, 266, 284
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 6 cut(s) 149, 498, 653, 872, 976, 1107
Bse1I ACTGG 2 cut(s) 43, 940
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 148, 266, 284
BseGI GGATG 3 cut(s) 277, 478, 946
BseLI CCNNNNNNNGG 6 cut(s) 149, 498, 653, 872, 976, 1107
BseMII CTCAG 4 cut(s) 321, 468, 717, 867
BseNI ACTGG 2 cut(s) 43, 940
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 995
BseXI GCAGC 3 cut(s) 102, 445, 1051
BseYI CCCAGC 2 cut(s) 233, 468
BsgI GTGCAG 2 cut(s) 45, 748
BshFI GGCC 2 cut(s) 153, 645
BshNI GGYRCC 2 cut(s) 979, 1097
BsiHKAI GWGCWC 4 cut(s) 38, 195, 995, 1137
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 1 cut(s) 626
BslI CCNNNNNNNGG 6 cut(s) 149, 498, 653, 872, 976, 1107
BsmAI GTCTC 4 cut(s) 479, 572, 594, 902
BsmBI CGTCTC 2 cut(s) 572, 594
BsmI GAATGC 2 cut(s) 325, 907
BsnI GGCC 2 cut(s) 153, 645
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 4 cut(s) 38, 195, 995, 1137
Bsp143I GATC 2 cut(s) 202, 527
BspACI CCGC 2 cut(s) 320, 883
BspANI GGCC 2 cut(s) 153, 645
BspCNI CTCAG 4 cut(s) 320, 469, 718, 866
BspLI GGNNCC 3 cut(s) 981, 1016, 1099
BspMI ACCTGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 197
BspT107I GGYRCC 2 cut(s) 979, 1097
BsrI ACTGG 2 cut(s) 43, 940
BssECI CCNNGG 3 cut(s) 148, 266, 284
BssMI GATC 2 cut(s) 202, 527
BssNI GRCGYC 1 cut(s) 980
BssT1I CCWWGG 2 cut(s) 148, 266
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 997
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 1 cut(s) 980
BstBAI YACGTR 1 cut(s) 1124
BstC8I GCNNGC 2 cut(s) 113, 1069
BstDEI CTNAG 6 cut(s) 307, 330, 477, 726, 853, 1038
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 277, 478, 946
BstH2I RGCGCY 1 cut(s) 983
BstHHI GCGC 1 cut(s) 982
BstKTI GATC 2 cut(s) 205, 530
BstMAI GTCTC 4 cut(s) 479, 572, 594, 902
BstMBI GATC 2 cut(s) 202, 527
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 1092
BstSLI GKGCMC 1 cut(s) 995
BstV1I GCAGC 3 cut(s) 102, 445, 1051
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuI GTATCC 1 cut(s) 1081
BsuRI GGCC 2 cut(s) 153, 645
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 3 cut(s) 277, 478, 946
BtsIMutI CAGTG 2 cut(s) 36, 315
BveI ACCTGC 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 113, 1069
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 20, 644
CseI GACGC 1 cut(s) 499
Csp6I GTAC 4 cut(s) 674, 1098, 1125, 1150
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 2 cut(s) 578, 779
CviQI GTAC 4 cut(s) 674, 1098, 1125, 1150
DdeI CTNAG 6 cut(s) 307, 330, 477, 726, 853, 1038
DinI GGCGCC 1 cut(s) 981
DpnI GATC 2 cut(s) 204, 529
DpnII GATC 2 cut(s) 202, 527
DrdI GACNNNNNNGTC 1 cut(s) 758
DseDI GACNNNNNNGTC 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 898
Ecl136II GAGCTC 1 cut(s) 1135
Eco130I CCWWGG 2 cut(s) 148, 266
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 1137
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 1135
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 1135
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 148, 266
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 1137
EgeI GGCGCC 1 cut(s) 981
EheI GGCGCC 1 cut(s) 981
ErhI CCWWGG 2 cut(s) 148, 266
Esp3I CGTCTC 2 cut(s) 572, 594
FaeI CATG 2 cut(s) 581, 782
FatI CATG 2 cut(s) 577, 778
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 116, 459, 1065
FokI GGATG 3 cut(s) 284, 485, 953
FriOI GRGCYC 1 cut(s) 1137
Fsp4HI GCNGC 3 cut(s) 116, 459, 1065
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 981
GluI GCNGC 3 cut(s) 116, 459, 1065
GsaI CCCAGC 2 cut(s) 237, 472
HaeII RGCGCY 1 cut(s) 983
HaeIII GGCC 2 cut(s) 153, 645
HapII CCGG 1 cut(s) 626
HgaI GACGC 1 cut(s) 499
HhaI GCGC 1 cut(s) 982
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 2 cut(s) 581, 782
Hin6I GCGC 1 cut(s) 980
HinP1I GCGC 1 cut(s) 980
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 3 cut(s) 162, 734, 1142
HpaII CCGG 1 cut(s) 626
HphI GGTGA 4 cut(s) 212, 326, 814, 1151
Hpy166II GTNNAC 4 cut(s) 174, 751, 993, 1150
Hpy188I TCNGA 4 cut(s) 184, 258, 592, 1014
Hpy188III TCNNGA 3 cut(s) 206, 569, 655
Hpy8I GTNNAC 4 cut(s) 174, 751, 993, 1150
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 4 cut(s) 538, 715, 876, 922
HpyCH4III ACNGT 1 cut(s) 997
HpyCH4IV ACGT 3 cut(s) 603, 1114, 1123
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 6 cut(s) 307, 330, 477, 726, 853, 1038
HpySE526I ACGT 3 cut(s) 603, 1114, 1123
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 2 cut(s) 581, 782
HspAI GCGC 1 cut(s) 980
KasI GGCGCC 1 cut(s) 979
KpnI GGTACC 1 cut(s) 1101
Kzo9I GATC 2 cut(s) 202, 527
Lsp1109I GCAGC 3 cut(s) 102, 445, 1051
LweI GCATC 2 cut(s) 463, 791
MaeI CTAG 1 cut(s) 438
MaeII ACGT 3 cut(s) 603, 1114, 1123
MaeIII GTNAC 3 cut(s) 802, 1115, 1139
MalI GATC 2 cut(s) 204, 529
MboI GATC 2 cut(s) 202, 527
MboII GAAGA 5 cut(s) 221, 373, 670, 713, 716
MfeI CAATTG 2 cut(s) 15, 947
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 4 cut(s) 38, 195, 995, 1137
MluCI AATT 9 cut(s) 15, 79, 227, 611, 708, 807, 842, 947, 1022
Mly113I GGCGCC 1 cut(s) 980
MlyI GAGTC 3 cut(s) 171, 728, 1136
MmeI TCCRAC 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 784
MseI TTAA 5 cut(s) 302, 789, 819, 966, 987
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 2 cut(s) 15, 947
Mva1269I GAATGC 2 cut(s) 325, 907
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 455
NarI GGCGCC 1 cut(s) 980
NdeI CATATG 1 cut(s) 535
NdeII GATC 2 cut(s) 202, 527
NlaIII CATG 2 cut(s) 581, 782
NlaIV GGNNCC 3 cut(s) 981, 1016, 1099
NmuCI GTSAC 2 cut(s) 802, 1139
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 569
PceI AGGCCT 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 1120
PctI GAATGC 2 cut(s) 325, 907
PkrI GCNGC 3 cut(s) 117, 460, 1066
PleI GAGTC 3 cut(s) 170, 728, 1136
PluTI GGCGCC 1 cut(s) 983
PpsI GAGTC 3 cut(s) 170, 728, 1136
Ppu21I YACGTR 1 cut(s) 1124
PshBI ATTAAT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 1137
Psp1406I AACGTT 1 cut(s) 1114
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 2 cut(s) 233, 468
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 981, 1016, 1099
PspPI GGNCC 2 cut(s) 20, 644
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 527
RsaI GTAC 4 cut(s) 675, 1099, 1126, 1151
RsaNI GTAC 4 cut(s) 674, 1098, 1125, 1150
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 1137
SaqAI TTAA 5 cut(s) 302, 789, 819, 966, 987
SatI GCNGC 3 cut(s) 116, 459, 1065
Sau3AI GATC 2 cut(s) 202, 527
Sau96I GGNCC 2 cut(s) 20, 644
SchI GAGTC 3 cut(s) 171, 728, 1136
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 4 cut(s) 38, 195, 995, 1137
SfaNI GCATC 2 cut(s) 463, 791
SfcI CTRYAG 1 cut(s) 1092
SfoI GGCGCC 1 cut(s) 981
Sfr274I CTCGAG 1 cut(s) 569
SinI GGWCC 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 9 cut(s) 15, 79, 227, 611, 708, 807, 842, 947, 1022
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 2 cut(s) 320, 883
SspDI GGCGCC 1 cut(s) 979
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 1137
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 148, 266
TaaI ACNGT 1 cut(s) 997
TaiI ACGT 3 cut(s) 606, 1117, 1126
TaqI TCGA 5 cut(s) 32, 570, 737, 861, 1103
TasI AATT 9 cut(s) 15, 79, 227, 611, 708, 807, 842, 947, 1022
TatI WGTACW 1 cut(s) 673
Tru1I TTAA 5 cut(s) 302, 789, 819, 966, 987
Tru9I TTAA 5 cut(s) 302, 789, 819, 966, 987
TscAI CASTG 2 cut(s) 43, 315
TseFI GTSAC 2 cut(s) 802, 1139
TseI GCWGC 3 cut(s) 115, 458, 1064
Tsp45I GTSAC 2 cut(s) 802, 1139
TspDTI ATGAA 9 cut(s) 288, 352, 360, 594, 710, 714, 734, 858, 957
TspGWI ACGGA 2 cut(s) 12, 155
TspRI CASTG 2 cut(s) 43, 315
VneI GTGCAC 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 20
VspI ATTAAT 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 4 cut(s) 79, 227, 708, 842
XceI RCATGY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 569
XspI CTAG 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.