Rh4AG362400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014264
Physical Location & Seq
Forward (+)
67121828 .. 67125077
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG362400.1

Sequence Viewer

Length: 1044 bp
ATGCCTGATGTGAACCTATCACCTCCAGAGTGCGATAAGGTTGGGCAGGGCCGAACAAATTGTAAATGCCTAGATGCCGGGACCTTCAGGTGTGTGCAGCAGCATGTCATGGAAGCACGGGAAGACCTTAAAAGAAATCTTGGAAATGAAAAGTTTGTGAAGTTGGGTTTATGTGACATGGGAGAGGTAGTAGCACGAAGATGGAGTGATGAAGAAGAGCAGGCTTTTCACGATGTTGTTTACTCCAATCCTGCATCATTGGGTAGAAAATTTTGGAAGCATTTGTCTGCAGTGTTCCCTTCTCGAAGTAAAAGGGAACTGGTCAGCTATTATTTTAATGTGTTCATGCTTCGTAGGCGGGCTGCTCAGAACAGATCTAATACTTTAGAAATAGACAGTGATGATGATGAGTGGCATGGAAGCTATGGAAGTGCCAATGGTGGTATAGTTGCAGAAGATGATGAAGACTCTGTTATTGACTCTGTTGAGGATGGTCAAGCGGTGGGCCATAGAGAGTACTCTGAAGAAGATGATAGCGATGATGATGACAGTGATGGTGATGATTATGTGGGATATGGAGAAGATGGTGGGATGGATCATATAGGAGAATCATACAGGCTGAAATTGGTTGATGAAGGAAAATATGATACTATAGCTCAGAATGGGGAGAAGATTCCAGGGTGTTCTGAGGAGGAATTTGGTTATCAAGATGACTCATGCGTATCTTTCGAGTTTCAGCCCTATATGCATGACTCTTGTGGTCGAATTGATGCTGAACCTGCTGGTGGTGCTTTACAAGGCACTGGATTCAAGGACGAGCATAGCCAAAGCTTGCGTAGCCAAGACGATGCATCAAGTGATGTAGTTGGTCATGGATATCTATTGGAGCCTTGTGACGCTAAAGTTTGGGATGCTAGGTTCCCAATGGATCCCATGAAAGGTATTGATCTTCTACCTACATGGAGTATGATTGAGGACATATTTGATCAAGGCATGGGGGATTACAAGATGAGGGATGACCAAAAGGCACCAGCTAGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

347

Amino Acids

38.8

Weight (kDa)

4.36

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26580 AT1G26580 AT1G26580
fragaria_vesca FvH4_4g30340
malus_domestica MD13G1064500.v1.1 MD16G1063000.v1.1
prunus_persica Prupe.1G283800_v2.0.a1
pyrus_communis pycom16g05520
rosa_chinensis RchiOBHm_Chr4g0438631
rosa_roxburghii Rroxscaffold_5G00379620
rosa_rugosa Rorug04G0312000
rosa_samantha Rh4AG362400 Rh4BG373800 Rh4CG387700 Rh4DG368500
rosa_wichuraiana Rw0G006710 Rw0G016660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 1027
AccB7I CCANNNNNTGG 1 cut(s) 1037
AciI CCGC 2 cut(s) 358, 500
AclWI GGATC 3 cut(s) 603, 923, 936
AcsI RAATTY 2 cut(s) 269, 695
AcuI CTGAAG 2 cut(s) 70, 543
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 3 cut(s) 785, 938, 1037
AgsI TTSAA 1 cut(s) 811
AjnI CCWGG 1 cut(s) 676
AloI GAACNNNNNNTCC 2 cut(s) 902, 934
AluBI AGCT 5 cut(s) 327, 423, 656, 831, 1034
AluI AGCT 5 cut(s) 327, 423, 656, 831, 1034
AlwI GGATC 3 cut(s) 603, 923, 936
AoxI GGCC 2 cut(s) 49, 505
ApeKI GCWGC 3 cut(s) 97, 100, 362
ApoI RAATTY 2 cut(s) 269, 695
AspS9I GGNCC 3 cut(s) 49, 81, 505
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 12, 569
AvaII GGWCC 1 cut(s) 81
BamHI GGATCC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 1027
BbsI GAAGAC 2 cut(s) 129, 471
BbvI GCAGC 3 cut(s) 109, 112, 349
BccI CCATC 5 cut(s) 195, 485, 548, 578, 586
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 3 cut(s) 71, 915, 1035
BfmI CTRYAG 2 cut(s) 288, 651
BfuAI ACCTGC 1 cut(s) 787
BglII AGATCT 1 cut(s) 374
BisI GCNGC 3 cut(s) 98, 101, 363
BlsI GCNGC 3 cut(s) 99, 102, 364
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 2 cut(s) 79, 678
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 49, 81, 505
BmiI GGNNCC 5 cut(s) 82, 888, 920, 930, 1029
BmrFI CCNGG 2 cut(s) 79, 678
BmsI GCATC 6 cut(s) 64, 263, 760, 838, 860, 901
BpiI GAAGAC 2 cut(s) 129, 471
BpmI CTGGAG 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 677
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 3 cut(s) 785, 938, 1037
Bse1I ACTGG 2 cut(s) 324, 808
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 1 cut(s) 677
BseGI GGATG 4 cut(s) 496, 597, 916, 1021
BseLI CCNNNNNNNGG 3 cut(s) 785, 938, 1037
BseMII CTCAG 3 cut(s) 380, 671, 678
BseNI ACTGG 2 cut(s) 324, 808
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 3 cut(s) 109, 112, 349
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 2 cut(s) 51, 507
BshNI GGYRCC 1 cut(s) 1027
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 785, 938, 1037
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 2 cut(s) 51, 507
Bsp143I GATC 5 cut(s) 374, 595, 928, 946, 985
BspACI CCGC 2 cut(s) 358, 500
BspANI GGCC 2 cut(s) 51, 507
BspCNI CTCAG 3 cut(s) 379, 670, 679
BspLI GGNNCC 5 cut(s) 82, 888, 920, 930, 1029
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 3 cut(s) 603, 923, 936
BspQI GCTCTTC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 1027
BsrI ACTGG 2 cut(s) 324, 808
BssECI CCNNGG 1 cut(s) 677
BssMI GATC 5 cut(s) 374, 595, 928, 946, 985
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 2 cut(s) 398, 551
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 222, 360, 833
BstDEI CTNAG 3 cut(s) 366, 657, 687
BstF5I GGATG 4 cut(s) 496, 597, 916, 1021
BstKTI GATC 5 cut(s) 377, 598, 931, 949, 988
BstMBI GATC 5 cut(s) 374, 595, 928, 946, 985
BstMWI GCNNNNNNNGC 5 cut(s) 355, 745, 779, 788, 837
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 77, 676
BstSFI CTRYAG 2 cut(s) 288, 651
BstV1I GCAGC 3 cut(s) 109, 112, 349
BstV2I GAAGAC 2 cut(s) 129, 471
BstX2I RGATCY 2 cut(s) 374, 928
BstYI RGATCY 2 cut(s) 374, 928
BsuRI GGCC 2 cut(s) 51, 507
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 4 cut(s) 496, 597, 916, 1021
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 4 cut(s) 297, 403, 556, 801
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 3 cut(s) 222, 360, 833
Cfr13I GGNCC 3 cut(s) 49, 81, 505
CseI GACGC 1 cut(s) 905
Csp6I GTAC 1 cut(s) 517
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 3 cut(s) 366, 657, 687
DpnI GATC 5 cut(s) 376, 597, 930, 948, 987
DpnII GATC 5 cut(s) 374, 595, 928, 946, 985
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 2 cut(s) 70, 543
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 676
EcoRV GATATC 1 cut(s) 878
EcoT22I ATGCAT 2 cut(s) 750, 853
FaqI GGGAC 1 cut(s) 94
FauI CCCGC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 98, 101, 363
FokI GGATG 4 cut(s) 503, 604, 923, 1028
Fsp4HI GCNGC 3 cut(s) 98, 101, 363
FspBI CTAG 3 cut(s) 71, 915, 1035
GluI GCNGC 3 cut(s) 98, 101, 363
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 2 cut(s) 51, 507
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 905
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 7 cut(s) 467, 479, 608, 673, 713, 752, 807
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 12, 569
Hpy166II GTNNAC 2 cut(s) 13, 241
Hpy188I TCNGA 4 cut(s) 369, 523, 660, 688
Hpy188III TCNNGA 4 cut(s) 26, 230, 303, 707
Hpy8I GTNNAC 2 cut(s) 13, 241
HpyAV CCTTC 3 cut(s) 94, 309, 629
HpyCH4III ACNGT 2 cut(s) 398, 551
HpyCH4V TGCA 6 cut(s) 97, 254, 290, 452, 748, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 355, 745, 779, 788, 837
HpyF3I CTNAG 3 cut(s) 366, 657, 687
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 5 cut(s) 374, 595, 928, 946, 985
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 3 cut(s) 109, 112, 349
LweI GCATC 6 cut(s) 64, 263, 760, 838, 860, 901
MaeI CTAG 3 cut(s) 71, 915, 1035
MaeIII GTNAC 2 cut(s) 173, 893
MalI GATC 5 cut(s) 376, 597, 930, 948, 987
MboI GATC 5 cut(s) 374, 595, 928, 946, 985
MflI RGATCY 2 cut(s) 374, 928
MluCI AATT 5 cut(s) 58, 269, 623, 695, 765
MlyI GAGTC 4 cut(s) 461, 473, 707, 746
MnlI CCTC 7 cut(s) 33, 178, 481, 682, 685, 967, 1005
Mph1103I ATGCAT 2 cut(s) 750, 853
MseI TTAA 2 cut(s) 129, 336
MslI CAYNNNNRTG 1 cut(s) 199
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 79, 678
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 5 cut(s) 355, 745, 779, 788, 837
NciI CCSGG 1 cut(s) 79
NdeII GATC 5 cut(s) 374, 595, 928, 946, 985
NlaIV GGNNCC 5 cut(s) 82, 888, 920, 930, 1029
NmuCI GTSAC 2 cut(s) 173, 893
NsiI ATGCAT 2 cut(s) 750, 853
NspI RCATGY 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 608, 673, 807
PflMI CCANNNNNTGG 1 cut(s) 1037
PkrI GCNGC 3 cut(s) 99, 102, 364
PleI GAGTC 4 cut(s) 461, 473, 707, 746
PpsI GAGTC 4 cut(s) 461, 473, 707, 746
PpuMI RGGWCCY 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 5 cut(s) 82, 888, 920, 930, 1029
PspPI GGNCC 3 cut(s) 49, 81, 505
PspPPI RGGWCCY 1 cut(s) 81
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 2 cut(s) 374, 928
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 129, 336
SatI GCNGC 3 cut(s) 98, 101, 363
Sau3AI GATC 5 cut(s) 374, 595, 928, 946, 985
Sau96I GGNCC 3 cut(s) 49, 81, 505
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 4 cut(s) 461, 473, 707, 746
ScrFI CCNGG 2 cut(s) 79, 678
SfaNI GCATC 6 cut(s) 64, 263, 760, 838, 860, 901
SfcI CTRYAG 2 cut(s) 288, 651
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 5 cut(s) 58, 269, 623, 695, 765
SsiI CCGC 2 cut(s) 358, 500
SspMI CTAG 3 cut(s) 71, 915, 1035
StyD4I CCNGG 2 cut(s) 77, 676
TaaI ACNGT 2 cut(s) 398, 551
TaqI TCGA 3 cut(s) 304, 729, 763
TasI AATT 5 cut(s) 58, 269, 623, 695, 765
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 3 cut(s) 608, 673, 807
Tru1I TTAA 2 cut(s) 129, 336
Tru9I TTAA 2 cut(s) 129, 336
TscAI CASTG 4 cut(s) 297, 403, 556, 808
TseFI GTSAC 2 cut(s) 173, 893
TseI GCWGC 3 cut(s) 97, 100, 362
Tsp45I GTSAC 2 cut(s) 173, 893
TspDTI ATGAA 6 cut(s) 162, 225, 334, 477, 648, 950
TspRI CASTG 4 cut(s) 297, 403, 556, 808
Van91I CCANNNNNTGG 1 cut(s) 1037
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 2 cut(s) 269, 695
XceI RCATGY 1 cut(s) 107
XspI CTAG 3 cut(s) 71, 915, 1035
ZrmI AGTACT 1 cut(s) 518
Zsp2I ATGCAT 2 cut(s) 750, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.