Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Forward (+)

9298670 .. 9300800

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATATCTCCGACATAGGTAGGAAACTTAGTCTCGATAACAACAAGCTTTTAATCAGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATCGGCGTTGGTGAGATCTGTAAAGCTGTGATTTGTCTAGAAATCGCCGCCACTAGGTTGCAGATTATATTCGATAGGCAAGCAGCGGTTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCTAGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAATTGGCGGTTCAATTTGGCTGTGTTAGGGTAATCAAATCCGTGCAAAATGTGTTATCCTCGTATAAGGAGAGGTTTCTTGCGTCACTACCAGCGTCGAGACGGGCTAATGCTGATTTTACTAGACCTGTATTTACAGCTGCTGCTTTCTATTTGTGTGCTAAGAAGCAGAAGCTTAAGGTAGATAAGCTTAGGTTGATTGAGGTTTGTGGTACATCAGAGTCTGAATTCTCTTGTGTCTCGACCTCCATGACAGATCTTTGTTTTGACTGTGTTGGGATCTCTAAGGAAAAGAAAGATGCAAAAGACGTTAAAGGAAACAGAGACTTGCTTGATGTGTTACCTGGAAAGAGGAGACTAGAGGATGGTGGATATTCATCTGGTGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAGGAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATTAAGAAGAATCCAGAGAAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAATCTGAGACCAAAGAGTTGCAAGTTGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

284

Amino Acids

31.77

Weight (kDa)

9.4

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	1.3e-25	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	4.8e-35	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	76, 159, 197, 299
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	3 cut(s)	67, 275, 578
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	165, 776
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	244, 305
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	7 cut(s)	49, 65, 137, 280, 431, 466, 481
AluI	AGCT	7 cut(s)	49, 65, 137, 280, 431, 466, 481
Alw26I	GTCTC	8 cut(s)	38, 254, 385, 535, 609, 640, 809, 821
AlwI	GGATC	3 cut(s)	67, 275, 578
AlwNI	CAGNNNCTG	2 cut(s)	434, 515
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	65, 194, 431, 434
ApoI	RAATTY	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	134, 686
BbsI	GAAGAC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	52, 206, 418, 421
BccI	CCATC	3 cut(s)	116, 650, 703
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	8 cut(s)	38, 254, 385, 535, 609, 640, 809, 821
BfaI	CTAG	5 cut(s)	149, 165, 234, 414, 650
BfmI	CTRYAG	2 cut(s)	66, 741
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	2 cut(s)	126, 547
BisI	GCNGC	5 cut(s)	66, 159, 195, 432, 435
BlsI	GCNGC	5 cut(s)	67, 160, 196, 433, 436
Bme1390I	CCNGG	1 cut(s)	636
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	79, 580
BpiI	GAAGAC	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	821
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 776
Bse1I	ACTGG	2 cut(s)	737, 801
Bse8I	GATNNNNATC	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	104, 661
BseJI	GATNNNNATC	1 cut(s)	667
BseLI	CCNNNNNNNGG	2 cut(s)	165, 776
BseMII	CTCAG	2 cut(s)	107, 816
BseNI	ACTGG	2 cut(s)	737, 801
BseRI	GAGGAG	2 cut(s)	658, 728
BseXI	GCAGC	4 cut(s)	52, 206, 418, 421
BshFI	GGCC	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	165, 776
BsmAI	GTCTC	8 cut(s)	38, 254, 385, 535, 609, 640, 809, 821
BsmBI	CGTCTC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	821
Bsp143I	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
BspACI	CCGC	4 cut(s)	76, 159, 197, 299
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	2 cut(s)	106, 817
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	3 cut(s)	67, 275, 578
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	821
BsrI	ACTGG	2 cut(s)	737, 801
BssMI	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	563, 745
BstAFI	CTTAAG	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	8 cut(s)	29, 93, 453, 482, 576, 720, 783, 825
BstF5I	GGATG	2 cut(s)	104, 661
BstKTI	GATC	6 cut(s)	75, 129, 239, 270, 550, 573
BstMAI	GTCTC	8 cut(s)	38, 254, 385, 535, 609, 640, 809, 821
BstMBI	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	2 cut(s)	66, 741
BstV1I	GCAGC	4 cut(s)	52, 206, 418, 421
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	4 cut(s)	72, 126, 547, 570
BstYI	RGATCY	4 cut(s)	72, 126, 547, 570
BsuRI	GGCC	1 cut(s)	800
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	104, 661
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	2 cut(s)	434, 515
CseI	GACGC	2 cut(s)	363, 375
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	2 cut(s)	541, 687
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	8 cut(s)	29, 93, 453, 482, 576, 720, 783, 825
DpnI	GATC	6 cut(s)	74, 128, 238, 269, 549, 572
DpnII	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
EciI	GGCGGA	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	821
Eco32I	GATATC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	2 cut(s)	544, 690
FaiI	YATR	9 cut(s)	17, 179, 215, 357, 542, 688, 726, 794, 853
FatI	CATG	2 cut(s)	540, 686
Fnu4HI	GCNGC	5 cut(s)	66, 159, 195, 432, 435
FokI	GGATG	2 cut(s)	91, 668
Fsp4HI	GCNGC	5 cut(s)	66, 159, 195, 432, 435
FspBI	CTAG	5 cut(s)	149, 165, 234, 414, 650
GluI	GCNGC	5 cut(s)	66, 159, 195, 432, 435
HaeIII	GGCC	1 cut(s)	800
HgaI	GACGC	2 cut(s)	363, 375
Hin1II	CATG	2 cut(s)	544, 690
HindIII	AAGCTT	4 cut(s)	47, 278, 464, 479
HinfI	GANTC	5 cut(s)	101, 512, 680, 766, 848
HphI	GGTGA	2 cut(s)	134, 686
Hpy188I	TCNGA	6 cut(s)	13, 59, 220, 511, 517, 826
Hpy188III	TCNNGA	7 cut(s)	35, 149, 234, 271, 390, 532, 770
Hpy99I	CGWCG	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	563, 745
HpyCH4IV	ACGT	2 cut(s)	258, 600
HpyCH4V	TGCA	5 cut(s)	68, 172, 337, 593, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	8 cut(s)	29, 93, 453, 482, 576, 720, 783, 825
HpySE526I	ACGT	2 cut(s)	258, 600
Hsp92II	CATG	2 cut(s)	544, 690
Kzo9I	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
LpnPI	CCDG	9 cut(s)	396, 432, 621, 648, 657, 718, 782, 783, 814
Lsp1109I	GCAGC	4 cut(s)	52, 206, 418, 421
LweI	GCATC	2 cut(s)	79, 580
MaeI	CTAG	5 cut(s)	149, 165, 234, 414, 650
MaeII	ACGT	2 cut(s)	258, 600
MaeIII	GTNAC	3 cut(s)	375, 630, 689
MalI	GATC	6 cut(s)	74, 128, 238, 269, 549, 572
MboI	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
MboII	GAAGA	3 cut(s)	675, 718, 775
MflI	RGATCY	4 cut(s)	72, 126, 547, 570
MluCI	AATT	6 cut(s)	203, 293, 305, 518, 751, 808
MlyI	GAGTC	2 cut(s)	521, 689
MmeI	TCCRAC	2 cut(s)	36, 198
MnlI	CCTC	9 cut(s)	357, 361, 487, 547, 636, 646, 706, 709, 721
MseI	TTAA	8 cut(s)	53, 201, 276, 282, 468, 603, 750, 759
MspA1I	CMGCKG	2 cut(s)	197, 431
MspCI	CTTAAG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
NlaIII	CATG	2 cut(s)	544, 690
NmuCI	GTSAC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	101, 766, 848
PkrI	GCNGC	5 cut(s)	67, 160, 196, 433, 436
PleI	GAGTC	2 cut(s)	520, 688
PpsI	GAGTC	2 cut(s)	520, 688
Psp1406I	AACGTT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	2 cut(s)	434, 515
PsuI	RGATCY	4 cut(s)	72, 126, 547, 570
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SaqAI	TTAA	8 cut(s)	53, 201, 276, 282, 468, 603, 750, 759
SatI	GCNGC	5 cut(s)	66, 159, 195, 432, 435
Sau3AI	GATC	6 cut(s)	72, 126, 236, 267, 547, 570
SchI	GAGTC	2 cut(s)	521, 689
ScrFI	CCNGG	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	79, 580
SfcI	CTRYAG	2 cut(s)	66, 741
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	6 cut(s)	203, 293, 305, 518, 751, 808
SsiI	CCGC	4 cut(s)	76, 159, 197, 299
SspMI	CTAG	5 cut(s)	149, 165, 234, 414, 650
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	563, 745
TaiI	ACGT	2 cut(s)	261, 603
TaqI	TCGA	6 cut(s)	36, 99, 183, 389, 533, 755
TasI	AATT	6 cut(s)	203, 293, 305, 518, 751, 808
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	101, 766, 848
Tru1I	TTAA	8 cut(s)	53, 201, 276, 282, 468, 603, 750, 759
Tru9I	TTAA	8 cut(s)	53, 201, 276, 282, 468, 603, 750, 759
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	4 cut(s)	65, 194, 431, 434
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	4 cut(s)	93, 657, 675, 840
TspGWI	ACGGA	1 cut(s)	322
Vha464I	CTTAAG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	2 cut(s)	148, 233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	5 cut(s)	149, 165, 234, 414, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.