Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

5137273 .. 5139745

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1073100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGATCTCTCCGACATAGCAAGGAAGCTCGACCTCTCCGACTCCAAGCACGTCATCCGACGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCTTCCATAATCGGCGTCGGCGAGGTTTGCAAAGCTGTGATTTGCTTAGAAATCGCCGCCACAAGATCGGGGCTCCTATTCGATCGGAAAAAGGCGATAATGTTGAGTGGGATGTCTGAAAAGGCTTACACCAGATCCTACAATTCGATGCAGAATGGTCTCGGGGTCAAGAACAAGCTGGATGTCAGAGAACTGGCAATTCAGTTTGGGTGTGTTCGGATCATTCCCTTTGTACAGAAGGCTTTGTCTCTTTACAAGACTCGGTTTCTTGCATCGTTGCCAGCTTCTCGGCGTGCAAGTGCCGATTTCACTCGACCTGTGTTCATTGCTGTGGCATTCTATTTGTGTGCGAAAAAACACAAGTTAAAGGTAGACAAGCTTAAGTTAATTGAGCTTTGTGGTGCATCTGAAACTGAATTCTCTTCCGTTTCGACTTCCATGAAGGACTTGTGCTTTGATGTTTGTGGGACTGAAAAGGAAAGGAAAGATCCCAAGGATGTGAAGGGGAACCGAGAGCTTCTAGATGTTTTGCCAGAGAAAAGGAAACTTGAGGATGGTGGCTATTCTTCCGATGAAGGAAACGAGCCTTCGAGTTACAAGCGGCACAAAAAGATGGAAAAGCATGCCTATGAGGGTTGGAAAACCTCAGTCCTCACATCTAATAAAGAAACCAAGTTCTTTGCAAGCGGACCAGACAGACTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

270

Amino Acids

30.21

Weight (kDa)

9.33

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	4.9e-22	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	2e-35	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	5 cut(s)	66, 76, 159, 703, 789
AclWI	GGATC	4 cut(s)	12, 231, 329, 584
AcsI	RAATTY	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	336
AflII	CTTAAG	1 cut(s)	482
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	8 cut(s)	28, 73, 137, 280, 386, 481, 496, 619
AluI	AGCT	8 cut(s)	28, 73, 137, 280, 386, 481, 496, 619
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	3 cut(s)	86, 266, 354
AlwI	GGATC	4 cut(s)	12, 231, 329, 584
Ama87I	CYCGRG	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AspS9I	GGNCC	1 cut(s)	791
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	791
BanII	GRGCYC	2 cut(s)	75, 177
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	2 cut(s)	650, 709
BceAI	ACGGC	1 cut(s)	63
BcoDI	GTCTC	3 cut(s)	86, 266, 354
BfaI	CTAG	2 cut(s)	623, 803
BfrI	CTTAAG	1 cut(s)	482
BisI	GCNGC	3 cut(s)	66, 159, 704
BlsI	GCNGC	3 cut(s)	67, 160, 705
Bme18I	GGWCC	1 cut(s)	791
BmeT110I	CYCGRG	1 cut(s)	263
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	176, 611
BmsI	GCATC	3 cut(s)	240, 383, 515
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	94, 300
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	6 cut(s)	54, 90, 219, 289, 604, 661
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	2 cut(s)	94, 300
Bsh1285I	CGRYCG	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	583
BsmAI	GTCTC	3 cut(s)	86, 266, 354
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	75, 177
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
BspACI	CCGC	5 cut(s)	66, 76, 159, 703, 789
BspCNI	CTCAG	1 cut(s)	761
BspLI	GGNNCC	2 cut(s)	176, 611
BspPI	GGATC	4 cut(s)	12, 231, 329, 584
BspTI	CTTAAG	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	94, 300
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	109, 529
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	4 cut(s)	384, 396, 726, 787
BstDEI	CTNAG	2 cut(s)	148, 748
BstF5I	GGATG	6 cut(s)	54, 90, 219, 289, 604, 661
BstKTI	GATC	6 cut(s)	7, 170, 187, 239, 324, 592
BstMAI	GTCTC	3 cut(s)	86, 266, 354
BstMBI	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 129
BstNSI	RCATGY	1 cut(s)	728
BstX2I	RGATCY	3 cut(s)	4, 236, 589
BstYI	RGATCY	3 cut(s)	4, 236, 589
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	6 cut(s)	54, 90, 219, 289, 604, 661
Cac8I	GCNNGC	4 cut(s)	384, 396, 726, 787
Cfr13I	GGNCC	1 cut(s)	791
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	541, 725
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	148, 748
DpnI	GATC	6 cut(s)	6, 169, 186, 238, 323, 591
DpnII	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
Eam1104I	CTCTTC	2 cut(s)	109, 529
EarI	CTCTTC	2 cut(s)	109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	75, 177
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	75, 177
ErhI	CCWWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	544, 728
FaiI	YATR	5 cut(s)	17, 110, 542, 726, 732
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	540, 724
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	66, 159, 704
FokI	GGATG	6 cut(s)	41, 77, 226, 296, 611, 668
FriOI	GRGCYC	2 cut(s)	75, 177
Fsp4HI	GCNGC	3 cut(s)	66, 159, 704
FspBI	CTAG	2 cut(s)	623, 803
GluI	GCNGC	3 cut(s)	66, 159, 704
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	544, 728
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	41, 101, 361
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	9 cut(s)	13, 40, 59, 189, 220, 290, 321, 511, 673
Hpy188III	TCNNGA	2 cut(s)	271, 623
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	63, 122
HpyAV	CCTTC	5 cut(s)	334, 538, 598, 671, 699
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	6 cut(s)	132, 253, 374, 398, 506, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 129
HpyF3I	CTNAG	2 cut(s)	148, 748
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	544, 728
Kzo9I	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
LmnI	GCTCC	2 cut(s)	78, 180
LpnPI	CCDG	7 cut(s)	107, 247, 266, 281, 396, 432, 648
LweI	GCATC	3 cut(s)	240, 383, 515
MaeI	CTAG	2 cut(s)	623, 803
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	6 cut(s)	6, 169, 186, 238, 323, 591
MboI	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
MboII	GAAGA	3 cut(s)	96, 516, 660
MflI	RGATCY	3 cut(s)	4, 236, 589
MhlI	GDGCHC	2 cut(s)	75, 177
MluCI	AATT	4 cut(s)	244, 300, 489, 518
MlyI	GAGTC	3 cut(s)	35, 95, 355
MmeI	TCCRAC	4 cut(s)	36, 63, 82, 719
MnlI	CCTC	6 cut(s)	44, 118, 646, 727, 757, 764
MseI	TTAA	3 cut(s)	467, 483, 488
MslI	CAYNNNNRTG	2 cut(s)	431, 729
MspCI	CTTAAG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	84, 129
NdeII	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
NlaIII	CATG	2 cut(s)	544, 728
NlaIV	GGNNCC	2 cut(s)	176, 611
NmeAIII	GCCGAG	2 cut(s)	94, 370
NspI	RCATGY	1 cut(s)	728
PaeI	GCATGC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 120
PctI	GAATGC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	67, 160, 705
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	3 cut(s)	35, 95, 355
PpsI	GAGTC	3 cut(s)	35, 95, 355
Psp124BI	GAGCTC	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	176, 611
PspPI	GGNCC	1 cut(s)	791
PsuI	RGATCY	3 cut(s)	4, 236, 589
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	431, 729
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	467, 483, 488
SatI	GCNGC	3 cut(s)	66, 159, 704
Sau3AI	GATC	6 cut(s)	4, 167, 184, 236, 321, 589
Sau96I	GGNCC	1 cut(s)	791
SchI	GAGTC	3 cut(s)	35, 95, 355
SduI	GDGCHC	2 cut(s)	75, 177
SfaNI	GCATC	3 cut(s)	240, 383, 515
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	431, 729
SmlI	CTYRAG	2 cut(s)	482, 650
SmoI	CTYRAG	2 cut(s)	482, 650
SphI	GCATGC	1 cut(s)	728
Sse9I	AATT	4 cut(s)	244, 300, 489, 518
SsiI	CCGC	5 cut(s)	66, 76, 159, 703, 789
SspMI	CTAG	2 cut(s)	623, 803
SstI	GAGCTC	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	594
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	7 cut(s)	30, 99, 183, 248, 415, 533, 692
TasI	AATT	4 cut(s)	244, 300, 489, 518
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	3 cut(s)	68, 161, 706
Tru1I	TTAA	3 cut(s)	467, 483, 488
Tru9I	TTAA	3 cut(s)	467, 483, 488
TspDTI	ATGAA	3 cut(s)	415, 557, 690
TspGWI	ACGGA	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	728
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	2 cut(s)	623, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.