Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Forward (+)

27962439 .. 27965010

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G273100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATCTCTCAGACATAGCAAGGAAGCTTGACCTCTCCGACTCCAAGCACGTCATCCGCAGAGCCGCCGAGCTCCGCCGTCTCTGTGACATCCAGTTTGACTCTTCTATAATCGGCGTCGGTGAGGTATGCAAAGCTGTGATTTGCTTAGAAATCGCCGCAACAAGGTCGGGGCTTCTATTCGATCGGCAAAAAGCGATAAGGTTGAGTGGGATGTCTGAAAAGGCTTACACCAGATCCTACAATTCCATGCAGAACGGTCTTGGGGTCAAGAACAAGCTGGATGTTAGAGAACTGGCAATTCAGTTTGGGTGCGTTAGGATCATCCCCTTTGTGCAGAAGGGTTTGTCTCTTTACAGGAGTCGGTTTCTTGCATCACTGCCAGCGTCTCGGCGGGCAAGTGCTGACTTCACTCGACCTGTCTTCATTGCCGTGGCATTCTACTTGTGTGCCAAAAAACACAAGCTAAAGGTAGACAAACTTAAGTTGATTGAGCTCTGTGGTGCATCTGAATCTGAATTCTCTTCGGTTTCTACTTCCATGAAGGACTTGTGCTTTGATATATGTGGGATTGAAAAGGAAAAGAAAGATCCCAAGGATGTCAAGGGAAACCGAGAACTTCTAGATGTTTTGCCAGAGAAAAGAAAACTTGAGGATGGTGGTTATTCATCTGATGAAGGAGCTGAGCCTTCAAGTTACAAGAAGCACAAAAAGATGGAAAAGCAGGCCTATGAGGGTTGGAAAACCACTGTCATTGCATCAAATAACCAAACCAAGGCAAAAGTTCTTTGCAAGCCCACCAGACAAACTCGGTTAGACTTTCTCAAGGACGTACCCGATACCCAGAACTTGAAGGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

288

Amino Acids

32.22

Weight (kDa)

9.43

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	5 cut(s)	58, 66, 76, 159, 394
AclWI	GGATC	4 cut(s)	12, 231, 329, 584
AcsI	RAATTY	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	834
AfiI	CCNNNNNNNGG	2 cut(s)	165, 775
AflII	CTTAAG	1 cut(s)	482
AgsI	TTSAA	3 cut(s)	575, 693, 853
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	7 cut(s)	28, 73, 137, 280, 466, 496, 683
AluI	AGCT	7 cut(s)	28, 73, 137, 280, 466, 496, 683
Alw21I	GWGCWC	2 cut(s)	75, 498
Alw26I	GTCTC	3 cut(s)	86, 354, 393
AlwI	GGATC	4 cut(s)	12, 231, 329, 584
AoxI	GGCC	1 cut(s)	726
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AsuHPI	GGTGA	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	75, 498
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	2 cut(s)	75, 498
BccI	CCATC	2 cut(s)	650, 709
BceAI	ACGGC	2 cut(s)	63, 416
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	3 cut(s)	86, 354, 393
BfaI	CTAG	1 cut(s)	623
BfrI	CTTAAG	1 cut(s)	482
BisI	GCNGC	2 cut(s)	66, 159
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	2 cut(s)	67, 160
BmgBI	CACGTC	1 cut(s)	52
BmsI	GCATC	3 cut(s)	383, 515, 767
BpiI	GAAGAC	1 cut(s)	415
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	671, 809
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	432, 594, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 775
Bse1I	ACTGG	2 cut(s)	94, 300
Bse3DI	GCAATG	2 cut(s)	426, 753
BseDI	CCNNGG	3 cut(s)	432, 594, 774
BseGI	GGATG	7 cut(s)	54, 90, 219, 289, 324, 604, 661
BseLI	CCNNNNNNNGG	2 cut(s)	165, 775
BseMI	GCAATG	2 cut(s)	426, 753
BseMII	CTCAG	2 cut(s)	24, 675
BseNI	ACTGG	2 cut(s)	94, 300
BsgI	GTGCAG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	75, 498
BslI	CCNNNNNNNGG	2 cut(s)	165, 775
BsmAI	GTCTC	3 cut(s)	86, 354, 393
BsmBI	CGTCTC	2 cut(s)	86, 393
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	5 cut(s)	4, 184, 236, 321, 589
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	5 cut(s)	58, 66, 76, 159, 394
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	2 cut(s)	23, 676
BspPI	GGATC	4 cut(s)	12, 231, 329, 584
BspTI	CTTAAG	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	426, 753
BsrI	ACTGG	2 cut(s)	94, 300
BssECI	CCNNGG	3 cut(s)	432, 594, 774
BssMI	GATC	5 cut(s)	4, 184, 236, 321, 589
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	594, 774
Bst4CI	ACNGT	2 cut(s)	260, 751
Bst6I	CTCTTC	2 cut(s)	109, 529
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	482
BstC8I	GCNNGC	4 cut(s)	384, 396, 726, 794
BstDEI	CTNAG	3 cut(s)	10, 148, 684
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	7 cut(s)	54, 90, 219, 289, 324, 604, 661
BstKTI	GATC	5 cut(s)	7, 187, 239, 324, 592
BstMAI	GTCTC	3 cut(s)	86, 354, 393
BstMBI	GATC	5 cut(s)	4, 184, 236, 321, 589
BstMCI	CGRYCG	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	3 cut(s)	4, 236, 589
BstYI	RGATCY	3 cut(s)	4, 236, 589
BsuRI	GGCC	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	7 cut(s)	54, 90, 219, 289, 324, 604, 661
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	377, 747
Cac8I	GCNNGC	4 cut(s)	384, 396, 726, 794
CseI	GACGC	2 cut(s)	106, 375
Csp6I	GTAC	1 cut(s)	833
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	2 cut(s)	250, 541
CviQI	GTAC	1 cut(s)	833
DdeI	CTNAG	3 cut(s)	10, 148, 684
DpnI	GATC	5 cut(s)	6, 186, 238, 323, 591
DpnII	GATC	5 cut(s)	4, 184, 236, 321, 589
Eam1104I	CTCTTC	2 cut(s)	109, 529
EarI	CTCTTC	2 cut(s)	109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	73, 496
Eco130I	CCWWGG	2 cut(s)	594, 774
Eco147I	AGGCCT	1 cut(s)	728
Eco24I	GRGCYC	2 cut(s)	75, 498
Eco53kI	GAGCTC	2 cut(s)	73, 496
EcoICRI	GAGCTC	2 cut(s)	73, 496
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	594, 774
EcoT38I	GRGCYC	2 cut(s)	75, 498
ErhI	CCWWGG	2 cut(s)	594, 774
Esp3I	CGTCTC	2 cut(s)	86, 393
FaeI	CATG	2 cut(s)	253, 544
FaiI	YATR	9 cut(s)	17, 110, 130, 251, 542, 563, 565, 732, 862
FatI	CATG	2 cut(s)	249, 540
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	66, 159
FokI	GGATG	7 cut(s)	41, 77, 226, 296, 311, 611, 668
FriOI	GRGCYC	2 cut(s)	75, 498
Fsp4HI	GCNGC	2 cut(s)	66, 159
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	2 cut(s)	66, 159
HaeIII	GGCC	1 cut(s)	728
HgaI	GACGC	2 cut(s)	106, 375
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	253, 544
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	4 cut(s)	41, 101, 361, 512
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	6 cut(s)	13, 40, 220, 511, 517, 673
Hpy188III	TCNNGA	2 cut(s)	271, 623
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	5 cut(s)	334, 538, 671, 699, 847
HpyCH4III	ACNGT	2 cut(s)	260, 751
HpyCH4IV	ACGT	2 cut(s)	51, 831
HpyCH4V	TGCA	7 cut(s)	132, 253, 337, 374, 506, 758, 792
HpyF3I	CTNAG	3 cut(s)	10, 148, 684
HpySE526I	ACGT	2 cut(s)	51, 831
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	253, 544
Kzo9I	GATC	5 cut(s)	4, 184, 236, 321, 589
LmnI	GCTCC	2 cut(s)	78, 680
LweI	GCATC	3 cut(s)	383, 515, 767
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	51, 831
MaeIII	GTNAC	2 cut(s)	86, 695
MalI	GATC	5 cut(s)	6, 186, 238, 323, 591
MboI	GATC	5 cut(s)	4, 184, 236, 321, 589
MboII	GAAGA	3 cut(s)	96, 415, 516
MflI	RGATCY	3 cut(s)	4, 236, 589
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	3 cut(s)	244, 300, 518
MlyI	GAGTC	3 cut(s)	35, 95, 370
MmeI	TCCRAC	2 cut(s)	63, 719
MnlI	CCTC	4 cut(s)	44, 118, 646, 727
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	437
NdeII	GATC	5 cut(s)	4, 184, 236, 321, 589
NlaIII	CATG	2 cut(s)	253, 544
NmeAIII	GCCGAG	2 cut(s)	94, 370
NmuCI	GTSAC	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	728
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	67, 160
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	3 cut(s)	35, 95, 369
PpsI	GAGTC	3 cut(s)	35, 95, 369
Psp124BI	GAGCTC	2 cut(s)	75, 498
PsuI	RGATCY	3 cut(s)	4, 236, 589
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	834
RsaNI	GTAC	1 cut(s)	833
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	2 cut(s)	75, 498
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	66, 159
Sau3AI	GATC	5 cut(s)	4, 184, 236, 321, 589
SchI	GAGTC	3 cut(s)	35, 95, 370
SduI	GDGCHC	2 cut(s)	75, 498
SfaNI	GCATC	3 cut(s)	383, 515, 767
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	3 cut(s)	482, 650, 824
SmoI	CTYRAG	3 cut(s)	482, 650, 824
Sse9I	AATT	3 cut(s)	244, 300, 518
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	5 cut(s)	58, 66, 76, 159, 394
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	2 cut(s)	75, 498
StuI	AGGCCT	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	594, 774
TaaI	ACNGT	2 cut(s)	260, 751
TaiI	ACGT	2 cut(s)	54, 834
TaqI	TCGA	2 cut(s)	183, 415
TasI	AATT	3 cut(s)	244, 300, 518
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	384, 754
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	4 cut(s)	415, 557, 657, 690
TspRI	CASTG	2 cut(s)	384, 754
Vha464I	CTTAAG	1 cut(s)	482
XapI	RAATTY	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.