Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

68133914 .. 68136908

Gene Structure 2995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATCTTTCAGACATAGCCAAGAAGCTCGACCTCTCCGACTCCAAGCAAGTCGTCCGCAGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCTTCCGTTATCGGCGTCGGAGAGGTGTGCAAGGCCGTGATCTGCTTGGAAATAGCCGCAACAAGGTCGGGGATTTTGTTTGATCGGCAAAAGGCGATAAAGTTGAGTGGGATGTCGGAAAAAGCTTACACCAGATCCTTTAATTCCTTGCAGAACGGCCTCGGCGTCAAGAACAAACTGGATGTTAGAGAACTTGCGATTCAGTTTGGGTGTGTTAGGATCATTCCCTTTGTGCAAAAGGGTTTATCCCTTTACAAGACTCGGTTTCTTGCATCGTTGTTGCCTTCTCGGCGGGCAGGTGCTGACTTCACTCGACCTGTCTTTGTTGCCGTTGCATTTTATTTGTGTGCAAAGAAACACAAGCTAAAGGTAGACAAGATTAAGTTGATTGAGCTCAGTGGTACTTCTGAAGCTGAATTCTCTTCGGTTTCTGTTTCCATGAAGGACTTGTGCTTTGATGTTTATGGGACCGAAAAGGAAAAGAAAGATCCCAAGGAGGTTAAGGGGAACCGAGAACTTTTAGATGTTTTGCCAGAGAAAAGGAAACTTGAGGATGGTGGTTATTCATCTGATGAAGGATCTGAGGTACTAATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

233

Amino Acids

25.9

Weight (kDa)

9.13

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	5.7e-24	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	2.2e-33	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	5 cut(s)	58, 66, 76, 159, 394
AclWI	GGATC	5 cut(s)	12, 231, 329, 584, 688
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	117, 267
AfaI	GTAC	2 cut(s)	505, 690
AfiI	CCNNNNNNNGG	1 cut(s)	165
AluBI	AGCT	6 cut(s)	28, 73, 227, 466, 496, 515
AluI	AGCT	6 cut(s)	28, 73, 227, 466, 496, 515
Alw21I	GWGCWC	2 cut(s)	75, 498
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	5 cut(s)	12, 231, 329, 584, 688
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	2 cut(s)	135, 259
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AspS9I	GGNCC	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	570
BanII	GRGCYC	2 cut(s)	75, 498
Bbv12I	GWGCWC	2 cut(s)	75, 498
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	4 cut(s)	63, 122, 274, 416
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	66, 159
BlsI	GCNGC	2 cut(s)	67, 160
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	2 cut(s)	571, 611
BmsI	GCATC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	117, 267
BsaJI	CCNNGG	2 cut(s)	262, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	94, 285
BseDI	CCNNGG	2 cut(s)	262, 594
BseGI	GGATG	4 cut(s)	90, 219, 289, 661
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	511, 675
BseNI	ACTGG	2 cut(s)	94, 285
BshFI	GGCC	2 cut(s)	137, 261
BsiHKAI	GWGCWC	2 cut(s)	75, 498
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	137, 261
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BspACI	CCGC	5 cut(s)	58, 66, 76, 159, 394
BspANI	GGCC	2 cut(s)	137, 261
BspCNI	CTCAG	2 cut(s)	510, 676
BspLI	GGNNCC	2 cut(s)	571, 611
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	5 cut(s)	12, 231, 329, 584, 688
BsrI	ACTGG	2 cut(s)	94, 285
BssECI	CCNNGG	2 cut(s)	262, 594
BssMI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BssNI	GRCGYC	2 cut(s)	117, 267
BssT1I	CCWWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	109, 529
BstACI	GRCGYC	2 cut(s)	117, 267
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	497, 684
BstF5I	GGATG	4 cut(s)	90, 219, 289, 661
BstKTI	GATC	7 cut(s)	7, 144, 187, 239, 324, 592, 683
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 391
BstX2I	RGATCY	4 cut(s)	4, 236, 589, 680
BstYI	RGATCY	4 cut(s)	4, 236, 589, 680
BsuRI	GGCC	2 cut(s)	137, 261
BtsCI	GGATG	4 cut(s)	90, 219, 289, 661
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	570
CseI	GACGC	2 cut(s)	106, 256
Csp6I	GTAC	2 cut(s)	504, 689
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	2 cut(s)	504, 689
DdeI	CTNAG	2 cut(s)	497, 684
DpnI	GATC	7 cut(s)	6, 143, 186, 238, 323, 591, 682
DpnII	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
Eam1104I	CTCTTC	2 cut(s)	109, 529
EarI	CTCTTC	2 cut(s)	109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	73, 496
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	75, 498
Eco47I	GGWCC	1 cut(s)	570
Eco53kI	GAGCTC	2 cut(s)	73, 496
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	2 cut(s)	73, 496
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	75, 498
ErhI	CCWWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	544
FaiI	YATR	3 cut(s)	17, 542, 567
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	1 cut(s)	540
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	66, 159
FokI	GGATG	4 cut(s)	77, 226, 296, 668
FriOI	GRGCYC	2 cut(s)	75, 498
Fsp4HI	GCNGC	2 cut(s)	66, 159
GluI	GCNGC	2 cut(s)	66, 159
HaeIII	GGCC	2 cut(s)	137, 261
HgaI	GACGC	2 cut(s)	106, 256
Hin1I	GRCGYC	2 cut(s)	117, 267
Hin1II	CATG	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	4 cut(s)	41, 101, 301, 361
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	7 cut(s)	13, 40, 122, 220, 511, 673, 685
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	396, 538, 671
HpyCH4V	TGCA	6 cut(s)	132, 253, 337, 374, 437, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 391
HpyF3I	CTNAG	2 cut(s)	497, 684
Hsp92I	GRCGYC	2 cut(s)	117, 267
Hsp92II	CATG	1 cut(s)	544
Kzo9I	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	107, 247, 266, 384, 432, 648
LweI	GCATC	1 cut(s)	383
MalI	GATC	7 cut(s)	6, 143, 186, 238, 323, 591, 682
MboI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
MboII	GAAGA	2 cut(s)	96, 516
MflI	RGATCY	4 cut(s)	4, 236, 589, 680
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	3 cut(s)	244, 518, 693
MlyI	GAGTC	3 cut(s)	35, 95, 355
MmeI	TCCRAC	3 cut(s)	63, 100, 198
MnlI	CCTC	6 cut(s)	44, 118, 272, 592, 646, 679
MseI	TTAA	4 cut(s)	243, 483, 603, 700
MwoI	GCNNNNNNNGC	2 cut(s)	84, 391
NdeII	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	2 cut(s)	571, 611
NmeAIII	GCCGAG	3 cut(s)	94, 243, 370
PaqCI	CACCTGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 105, 264
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	67, 160
PleI	GAGTC	3 cut(s)	35, 95, 355
PpsI	GAGTC	3 cut(s)	35, 95, 355
Psp124BI	GAGCTC	2 cut(s)	75, 498
PspN4I	GGNNCC	2 cut(s)	571, 611
PspPI	GGNCC	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	4 cut(s)	4, 236, 589, 680
RsaI	GTAC	2 cut(s)	505, 690
RsaNI	GTAC	2 cut(s)	504, 689
SacI	GAGCTC	2 cut(s)	75, 498
SaqAI	TTAA	4 cut(s)	243, 483, 603, 700
SatI	GCNGC	2 cut(s)	66, 159
Sau3AI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	3 cut(s)	35, 95, 355
SduI	GDGCHC	2 cut(s)	75, 498
SfaNI	GCATC	1 cut(s)	383
SinI	GGWCC	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	244, 518, 693
SsiI	CCGC	5 cut(s)	58, 66, 76, 159, 394
SstI	GAGCTC	2 cut(s)	75, 498
StyI	CCWWGG	1 cut(s)	594
TaqI	TCGA	3 cut(s)	30, 99, 415
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	3 cut(s)	244, 518, 693
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	243, 483, 603, 700
Tru9I	TTAA	4 cut(s)	243, 483, 603, 700
TscAI	CASTG	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	557, 657, 690
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.