Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

30587348 .. 30589808

Gene Structure 2461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATCTCTCAGACATAGCGAAGAGGCTTGACCTCTCCGACTCCAAGCAAGTCGTCCGCAGAGCCGCCGAGCTCCGCCGCCTCTGCGACATCCAGTTCGACTCTTCCGTCATCGGCGTCGGTGAGGTATGTAAGGCCGTGATCTGCTTAGAAATCGCCGCAACGAGGGCGGGGATTTTGTTTGATCGGCAAAAGGCGGTCAAGTTGAGTGGGATGTCGGAGAAGGCTTATACTAGATCGTTTAATTCATTGCAGAATGGCCTTGGCGTCAAGAACAAATTGGATGTTAGAGAATTGGCGATTCAGTTTGGATGTGTTCGGATTATTCCTTTCGTGCAGAAGGGTTTGTCGCTTTACAAGACTCGGTTTCTTGCATCATTGCTGCCTTCTCGGCGGGCTGGTGCTGACTTCACTAGGCCTGTGTTTGTTGCTGTAGCATTCTATTTATGTGCAAAGAAGCACAAGCTAAAAGTAGACAAGATTAAGTTGATTGAGCTCAGTGGTACTTCTGAAGCTGAATTCTCTTCGGTTTCTGTTTCTATGAAGGACTTGTGTTTTGATGTTTATGGCACCGAAAAGGAAAAGAAAGATCCCAAGGAGATCAAGGGGAATCGAGAACTTCTAGATGTTTTGCCAGAGAAAAGGAAACTTGAGGACGGTGGTTATTCATCTGATGAAGGATCTGAGCCTTCAATGTATAAGAAGCGCAAAACAATGGACAAGCAGGCCTATGAGAGTTGGAAGAAAACTGTTGTTGCATCCAATAAACAAACCAAGGCAAAAGTTCTTTCCAAGCGGACCACACAAATTGGCCTAAGCAGCTTTCTGAAGAAAGCACCTGATACCCAGAATTTGGAGCCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

289

Amino Acids

32.21

Weight (kDa)

9.6

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	6.2e-24	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	2.2e-33	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	853
AccI	GTMKAC	1 cut(s)	474
AciI	CCGC	9 cut(s)	58, 66, 76, 79, 159, 170, 197, 394, 796
AclWI	GGATC	3 cut(s)	12, 584, 688
AcsI	RAATTY	2 cut(s)	518, 850
AcuI	CTGAAG	2 cut(s)	531, 848
AcyI	GRCGYC	2 cut(s)	117, 267
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	165, 853
AgsI	TTSAA	1 cut(s)	693
AluBI	AGCT	5 cut(s)	73, 466, 496, 515, 822
AluI	AGCT	5 cut(s)	73, 466, 496, 515, 822
Alw21I	GWGCWC	2 cut(s)	75, 498
AlwI	GGATC	3 cut(s)	12, 584, 688
AoxI	GGCC	5 cut(s)	135, 259, 416, 726, 811
ApeKI	GCWGC	2 cut(s)	382, 819
ApoI	RAATTY	2 cut(s)	518, 850
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	2 cut(s)	75, 498
Bbv12I	GWGCWC	2 cut(s)	75, 498
BbvI	GCAGC	2 cut(s)	369, 831
BceAI	ACGGC	1 cut(s)	122
BfaI	CTAG	3 cut(s)	234, 414, 623
BfmI	CTRYAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	5 cut(s)	66, 79, 159, 383, 820
BlsI	GCNGC	5 cut(s)	67, 80, 160, 384, 821
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	2 cut(s)	571, 858
BmsI	GCATC	2 cut(s)	383, 767
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	117, 267
BsaJI	CCNNGG	3 cut(s)	262, 594, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 853
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	2 cut(s)	248, 377
BseDI	CCNNGG	3 cut(s)	262, 594, 774
BseGI	GGATG	5 cut(s)	90, 219, 289, 317, 758
BseLI	CCNNNNNNNGG	2 cut(s)	165, 853
BseMI	GCAATG	2 cut(s)	248, 377
BseMII	CTCAG	3 cut(s)	24, 511, 675
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	369, 831
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	5 cut(s)	137, 261, 418, 728, 813
BshNI	GGYRCC	1 cut(s)	569
BsiHKAI	GWGCWC	2 cut(s)	75, 498
BslI	CCNNNNNNNGG	2 cut(s)	165, 853
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	5 cut(s)	137, 261, 418, 728, 813
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
BspACI	CCGC	9 cut(s)	58, 66, 76, 79, 159, 170, 197, 394, 796
BspANI	GGCC	5 cut(s)	137, 261, 418, 728, 813
BspCNI	CTCAG	3 cut(s)	23, 510, 676
BspLI	GGNNCC	2 cut(s)	571, 858
BspPI	GGATC	3 cut(s)	12, 584, 688
BspT107I	GGYRCC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	248, 377
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	262, 594, 774
BssMI	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
BssNI	GRCGYC	2 cut(s)	117, 267
BssT1I	CCWWGG	3 cut(s)	262, 594, 774
Bst4CI	ACNGT	2 cut(s)	659, 751
Bst6I	CTCTTC	3 cut(s)	17, 109, 529
BstACI	GRCGYC	2 cut(s)	117, 267
BstC8I	GCNNGC	2 cut(s)	396, 726
BstDEI	CTNAG	6 cut(s)	10, 148, 497, 684, 815, 864
BstF5I	GGATG	5 cut(s)	90, 219, 289, 317, 758
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	7 cut(s)	7, 144, 187, 239, 592, 603, 683
BstMBI	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 167, 391, 819
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	369, 831
BstX2I	RGATCY	3 cut(s)	4, 589, 680
BstYI	RGATCY	3 cut(s)	4, 589, 680
BsuRI	GGCC	5 cut(s)	137, 261, 418, 728, 813
BtsCI	GGATG	5 cut(s)	90, 219, 289, 317, 758
BtsIMutI	CAGTG	1 cut(s)	505
Cac8I	GCNNGC	2 cut(s)	396, 726
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	798
CseI	GACGC	2 cut(s)	106, 256
Csp6I	GTAC	1 cut(s)	504
CspCI	CAANNNNNGTGG	4 cut(s)	190, 225, 790, 825
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	6 cut(s)	10, 148, 497, 684, 815, 864
DpnI	GATC	7 cut(s)	6, 143, 186, 238, 591, 602, 682
DpnII	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	3 cut(s)	17, 109, 529
EarI	CTCTTC	3 cut(s)	17, 109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	73, 496
Eco130I	CCWWGG	3 cut(s)	262, 594, 774
Eco147I	AGGCCT	2 cut(s)	418, 728
Eco24I	GRGCYC	2 cut(s)	75, 498
Eco47I	GGWCC	1 cut(s)	798
Eco53kI	GAGCTC	2 cut(s)	73, 496
Eco57I	CTGAAG	2 cut(s)	531, 848
EcoICRI	GAGCTC	2 cut(s)	73, 496
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	3 cut(s)	262, 594, 774
EcoT38I	GRGCYC	2 cut(s)	75, 498
ErhI	CCWWGG	3 cut(s)	262, 594, 774
FaiI	YATR	8 cut(s)	17, 130, 231, 448, 542, 567, 699, 732
FauI	CCCGC	2 cut(s)	163, 387
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	66, 79, 159, 383, 820
FokI	GGATG	5 cut(s)	77, 226, 296, 324, 745
FriOI	GRGCYC	2 cut(s)	75, 498
Fsp4HI	GCNGC	5 cut(s)	66, 79, 159, 383, 820
FspBI	CTAG	3 cut(s)	234, 414, 623
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	5 cut(s)	66, 79, 159, 383, 820
HaeIII	GGCC	5 cut(s)	137, 261, 418, 728, 813
HgaI	GACGC	2 cut(s)	106, 256
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	2 cut(s)	117, 267
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	5 cut(s)	41, 101, 301, 361, 610
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	8 cut(s)	13, 40, 220, 321, 511, 673, 685, 828
Hpy188III	TCNNGA	3 cut(s)	271, 614, 623
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	6 cut(s)	217, 334, 396, 538, 671, 699
HpyCH4III	ACNGT	2 cut(s)	659, 751
HpyCH4V	TGCA	5 cut(s)	253, 337, 374, 452, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 167, 391, 819
HpyF3I	CTNAG	6 cut(s)	10, 148, 497, 684, 815, 864
Hsp92I	GRCGYC	2 cut(s)	117, 267
HspAI	GCGC	1 cut(s)	706
Kzo9I	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
LmnI	GCTCC	2 cut(s)	78, 856
LpnPI	CCDG	7 cut(s)	107, 384, 432, 648, 710, 852, 860
Lsp1109I	GCAGC	2 cut(s)	369, 831
LweI	GCATC	2 cut(s)	383, 767
MaeI	CTAG	3 cut(s)	234, 414, 623
MalI	GATC	7 cut(s)	6, 143, 186, 238, 591, 602, 682
MboI	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
MboII	GAAGA	5 cut(s)	34, 96, 516, 754, 841
MflI	RGATCY	3 cut(s)	4, 589, 680
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	6 cut(s)	244, 278, 293, 518, 807, 850
MlyI	GAGTC	3 cut(s)	35, 95, 355
MmeI	TCCRAC	3 cut(s)	63, 198, 719
MnlI	CCTC	6 cut(s)	18, 44, 92, 118, 159, 646
MseI	TTAA	2 cut(s)	243, 483
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	4 cut(s)	84, 167, 391, 819
NdeII	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
NlaIV	GGNNCC	2 cut(s)	571, 858
NmeAIII	GCCGAG	2 cut(s)	94, 370
PceI	AGGCCT	2 cut(s)	418, 728
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	301, 610
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	5 cut(s)	67, 80, 160, 384, 821
PleI	GAGTC	3 cut(s)	35, 95, 355
PpsI	GAGTC	3 cut(s)	35, 95, 355
Psp124BI	GAGCTC	2 cut(s)	75, 498
PspN4I	GGNNCC	2 cut(s)	571, 858
PspPI	GGNCC	1 cut(s)	798
PsuI	RGATCY	3 cut(s)	4, 589, 680
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	75, 498
SaqAI	TTAA	2 cut(s)	243, 483
SatI	GCNGC	5 cut(s)	66, 79, 159, 383, 820
Sau3AI	GATC	7 cut(s)	4, 141, 184, 236, 589, 600, 680
Sau96I	GGNCC	1 cut(s)	798
SchI	GAGTC	3 cut(s)	35, 95, 355
SduI	GDGCHC	2 cut(s)	75, 498
SetI	ASST	8 cut(s)	36, 75, 129, 468, 498, 517, 824, 841
SfaNI	GCATC	2 cut(s)	383, 767
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	6 cut(s)	244, 278, 293, 518, 807, 850
SseBI	AGGCCT	2 cut(s)	418, 728
SsiI	CCGC	9 cut(s)	58, 66, 76, 79, 159, 170, 197, 394, 796
SspMI	CTAG	3 cut(s)	234, 414, 623
SstI	GAGCTC	2 cut(s)	75, 498
StuI	AGGCCT	2 cut(s)	418, 728
StyI	CCWWGG	3 cut(s)	262, 594, 774
TaaI	ACNGT	2 cut(s)	659, 751
TaqI	TCGA	2 cut(s)	99, 613
TasI	AATT	6 cut(s)	244, 278, 293, 518, 807, 850
TauI	GCSGC	3 cut(s)	68, 81, 161
TfiI	GAWTC	2 cut(s)	301, 610
Tru1I	TTAA	2 cut(s)	243, 483
Tru9I	TTAA	2 cut(s)	243, 483
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	382, 819
TspDTI	ATGAA	4 cut(s)	237, 557, 657, 690
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	2 cut(s)	518, 850
XbaI	TCTAGA	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	3 cut(s)	234, 414, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.