Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

54016969 .. 54019011

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG386000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATCTTTCAGACATAGCCAAGAAGCTCGACCTCTCCGACTCCAAGCAAGTCGTCCGCAGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCTTCCGTTATCGGCGTCGGAGAGGTGTGCAAGGCCGTGATCTGCTTGGAAATAGCCGCAACAAGGTCGGGGATTTTGTTTGATCGGCAAAAGGCCATAAAGTTGAGTGGGATGTCGGAAAAAGCTTACACCAGATCCTTTAATTCCTTGCAGAACGGCCTCGGCGTCAAGAACAAACTGGATGTTAGAGAACTTGCGATTCAGTTTGGGTGTGTTAGGATCATTCCCTTTGTGCAAAAGGGTTTATCCCTTTACAAAACTCGGTTTCTTGCATCATTGTTGCCTTCTCGGCGGGCAGGTGCTGACTTCACTCGACCTGTGTTTGTTGCTGTTGCATTCTATTTGTGCGCAAAGAAACACAAGCTAAAGGTGGACAAGATTAAGTTGATTGAGCTCAGTGGTACTTCTGAAGCTGAATTCTCTTCGGTTTCTGTTTCCATGAAGGACTTGTGCTTCGATGTTTATGGGACTGAAAAGGAAAAGAAAGATCCCAAGGAGGTTAAGGGGAACCGAGAACTTTTAGATGTTTTGCCAGAGAAAAGGAAACTTGAGGATGGTGGTTATTCATCTGATGAAGGATCTGAGCCTTCATGCTATAAGAAGCGCAAAACAATAGACAAGCAGGCCTATGAGGGTTGGAAGAAAACTGTCATTGCATCCAATAAACAAACCAAGGCAAAAGTTCTTTGCAAGCGGACCACACAAACTGGCCTAAGCAGCTTTCTTAAGAAAGCACCTGATACCCAGAAGTTGGCTGCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

288

Amino Acids

32.07

Weight (kDa)

9.59

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	8.9e-24	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	3.4e-33	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc16I	TGCGCA	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	853
AciI	CCGC	6 cut(s)	58, 66, 76, 159, 394, 796
AclWI	GGATC	5 cut(s)	12, 231, 329, 584, 688
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	117, 267
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	165, 853
AflII	CTTAAG	1 cut(s)	827
AluBI	AGCT	7 cut(s)	28, 73, 227, 466, 496, 515, 822
AluI	AGCT	7 cut(s)	28, 73, 227, 466, 496, 515, 822
Alw21I	GWGCWC	2 cut(s)	75, 498
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	5 cut(s)	12, 231, 329, 584, 688
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	5 cut(s)	135, 195, 259, 726, 811
ApeKI	GCWGC	2 cut(s)	819, 857
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AspLEI	GCGC	2 cut(s)	452, 708
AspS9I	GGNCC	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	798
BanII	GRGCYC	2 cut(s)	75, 498
Bbv12I	GWGCWC	2 cut(s)	75, 498
BbvI	GCAGC	2 cut(s)	831, 844
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	3 cut(s)	63, 122, 274
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	4 cut(s)	66, 159, 820, 858
BlsI	GCNGC	4 cut(s)	67, 160, 821, 859
Bme18I	GGWCC	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	798
BmiI	GGNNCC	1 cut(s)	611
BmsI	GCATC	2 cut(s)	383, 767
Bpu10I	CCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	671
BsaHI	GRCGYC	2 cut(s)	117, 267
BsaJI	CCNNGG	3 cut(s)	262, 594, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 853
Bse1I	ACTGG	3 cut(s)	94, 285, 814
Bse3DI	GCAATG	1 cut(s)	753
BseDI	CCNNGG	3 cut(s)	262, 594, 774
BseGI	GGATG	5 cut(s)	90, 219, 289, 661, 758
BseLI	CCNNNNNNNGG	2 cut(s)	165, 853
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	511, 675
BseNI	ACTGG	3 cut(s)	94, 285, 814
BseXI	GCAGC	2 cut(s)	831, 844
BshFI	GGCC	5 cut(s)	137, 197, 261, 728, 813
BsiHKAI	GWGCWC	2 cut(s)	75, 498
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	165, 853
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	5 cut(s)	137, 197, 261, 728, 813
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BspACI	CCGC	6 cut(s)	58, 66, 76, 159, 394, 796
BspANI	GGCC	5 cut(s)	137, 197, 261, 728, 813
BspCNI	CTCAG	2 cut(s)	510, 676
BspLI	GGNNCC	1 cut(s)	611
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	5 cut(s)	12, 231, 329, 584, 688
BspTI	CTTAAG	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	3 cut(s)	94, 285, 814
BssECI	CCNNGG	3 cut(s)	262, 594, 774
BssMI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BssNI	GRCGYC	2 cut(s)	117, 267
BssT1I	CCWWGG	2 cut(s)	594, 774
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	2 cut(s)	109, 529
BstACI	GRCGYC	2 cut(s)	117, 267
BstAFI	CTTAAG	1 cut(s)	827
BstC8I	GCNNGC	3 cut(s)	396, 726, 794
BstDEI	CTNAG	4 cut(s)	497, 684, 815, 864
BstF5I	GGATG	5 cut(s)	90, 219, 289, 661, 758
BstHHI	GCGC	2 cut(s)	452, 708
BstKTI	GATC	7 cut(s)	7, 144, 187, 239, 324, 592, 683
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 391, 819
BstV1I	GCAGC	2 cut(s)	831, 844
BstX2I	RGATCY	4 cut(s)	4, 236, 589, 680
BstYI	RGATCY	4 cut(s)	4, 236, 589, 680
BsuRI	GGCC	5 cut(s)	137, 197, 261, 728, 813
BtsCI	GGATG	5 cut(s)	90, 219, 289, 661, 758
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	396, 726, 794
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	2 cut(s)	452, 708
Cfr13I	GGNCC	1 cut(s)	798
CseI	GACGC	2 cut(s)	106, 256
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	2 cut(s)	541, 693
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	4 cut(s)	497, 684, 815, 864
DpnI	GATC	7 cut(s)	6, 143, 186, 238, 323, 591, 682
DpnII	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
Eam1104I	CTCTTC	2 cut(s)	109, 529
EarI	CTCTTC	2 cut(s)	109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	73, 496
Eco130I	CCWWGG	2 cut(s)	594, 774
Eco147I	AGGCCT	1 cut(s)	728
Eco24I	GRGCYC	2 cut(s)	75, 498
Eco47I	GGWCC	1 cut(s)	798
Eco53kI	GAGCTC	2 cut(s)	73, 496
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	2 cut(s)	73, 496
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	594, 774
EcoT38I	GRGCYC	2 cut(s)	75, 498
ErhI	CCWWGG	2 cut(s)	594, 774
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	544, 696
FaiI	YATR	7 cut(s)	17, 200, 542, 567, 694, 699, 732
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	540, 692
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	66, 159, 820, 858
FokI	GGATG	5 cut(s)	77, 226, 296, 668, 745
FriOI	GRGCYC	2 cut(s)	75, 498
Fsp4HI	GCNGC	4 cut(s)	66, 159, 820, 858
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	2 cut(s)	451, 707
GluI	GCNGC	4 cut(s)	66, 159, 820, 858
HaeIII	GGCC	5 cut(s)	137, 197, 261, 728, 813
HgaI	GACGC	2 cut(s)	106, 256
HhaI	GCGC	2 cut(s)	452, 708
Hin1I	GRCGYC	2 cut(s)	117, 267
Hin1II	CATG	2 cut(s)	544, 696
Hin6I	GCGC	2 cut(s)	450, 706
HinP1I	GCGC	2 cut(s)	450, 706
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	3 cut(s)	41, 101, 301
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	7 cut(s)	13, 40, 122, 220, 511, 673, 685
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	4 cut(s)	396, 538, 671, 699
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4V	TGCA	7 cut(s)	132, 253, 337, 374, 437, 758, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 391, 819
HpyF3I	CTNAG	4 cut(s)	497, 684, 815, 864
Hsp92I	GRCGYC	2 cut(s)	117, 267
Hsp92II	CATG	2 cut(s)	544, 696
HspAI	GCGC	2 cut(s)	450, 706
Kzo9I	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	831, 844
LweI	GCATC	2 cut(s)	383, 767
MalI	GATC	7 cut(s)	6, 143, 186, 238, 323, 591, 682
MboI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
MboII	GAAGA	3 cut(s)	96, 516, 754
MflI	RGATCY	4 cut(s)	4, 236, 589, 680
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	2 cut(s)	244, 518
MlyI	GAGTC	2 cut(s)	35, 95
MmeI	TCCRAC	4 cut(s)	63, 100, 198, 719
MnlI	CCTC	6 cut(s)	44, 118, 272, 592, 646, 727
MseI	TTAA	4 cut(s)	243, 483, 603, 828
MspCI	CTTAAG	1 cut(s)	827
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	84, 391, 819
NdeII	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
NlaIII	CATG	2 cut(s)	544, 696
NlaIV	GGNNCC	1 cut(s)	611
NmeAIII	GCCGAG	3 cut(s)	94, 243, 370
NsbI	TGCGCA	1 cut(s)	451
PaqCI	CACCTGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 105, 264
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	853
PkrI	GCNGC	4 cut(s)	67, 160, 821, 859
PleI	GAGTC	2 cut(s)	35, 95
PpsI	GAGTC	2 cut(s)	35, 95
Psp124BI	GAGCTC	2 cut(s)	75, 498
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	4 cut(s)	4, 236, 589, 680
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	75, 498
SaqAI	TTAA	4 cut(s)	243, 483, 603, 828
SatI	GCNGC	4 cut(s)	66, 159, 820, 858
Sau3AI	GATC	7 cut(s)	4, 141, 184, 236, 321, 589, 680
Sau96I	GGNCC	1 cut(s)	798
SchI	GAGTC	2 cut(s)	35, 95
SduI	GDGCHC	2 cut(s)	75, 498
SfaNI	GCATC	2 cut(s)	383, 767
SinI	GGWCC	1 cut(s)	798
SmlI	CTYRAG	2 cut(s)	650, 827
SmoI	CTYRAG	2 cut(s)	650, 827
Sse9I	AATT	2 cut(s)	244, 518
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	6 cut(s)	58, 66, 76, 159, 394, 796
SstI	GAGCTC	2 cut(s)	75, 498
StuI	AGGCCT	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	594, 774
TaaI	ACNGT	1 cut(s)	751
TaqI	TCGA	4 cut(s)	30, 99, 415, 558
TasI	AATT	2 cut(s)	244, 518
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	4 cut(s)	243, 483, 603, 828
Tru9I	TTAA	4 cut(s)	243, 483, 603, 828
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	819, 857
TspDTI	ATGAA	4 cut(s)	557, 657, 681, 690
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	853
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	798
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.