Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

5187190 .. 5190064

Gene Structure 2875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1074100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGATCTCTCCGACATAGCAAGGAAGCTCGACCTCGACGACTCCAAGCACGTCATCCGACGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCCTCCATAATCGGCGTCGGTGAGGTTTGCAAAGCTGTGATTTATAAGAAAAGAAGATCTTTTATTATATCTTTCTTAATGAGAAAGGAATACAACTCAGTTTATATACATTTATCCGGGCTCCTATTGGATAGGAAAAAGGTGACAACGTTGAGTGGGATGTCTGAAAAGGCTTACACCAGATGCTACAATTCGATGCAGAACGGTCTAGGGGTCAAGAACAAGCTGGATGTTAGAGAACTGGCAATTCAGTTTGGGTGTGTTCGGATCATTCCCTTTGTACAGAAGGCCTTGTCTCTTTACAAGACTCGGTTTCTTGCATCGTTGCCAGCTTCTCGGCGGGCAAGTGCTGATTTCACTCGTCCCATGTTCATTGCTGTGGCATTCTATGTGTGTGCAAAACACAAGCTAAAGGTAGACAAGCTTAAGTTGATTGAGCTTTGCGGTGCATCTGAAACTGAATTCTCTTCCGTTTCGACTTCCATGAAAGACTTGTGCTTTGATGTTTGTGGAATTGAAAAGGAAAAGAAAGATCCCAAGGATGTGAAGGGGAACCGAGAGCTTCTGGATGTTTTGCCGGAGAAAAGGAAACTTGAGGATGGCGGCTATTCCTCCGATGAAGTAACTGAGTCTTCAAGTTACAAGCGGCACAAAAAGATCAAAAAGCGTGCCTACGAGGGTTGGAAAACCTCAGTCCTCACATCTAATAAAGAAACCAAGGCAAAAGGTTTGAATGCATTTCCTTTCAGATTGTTTCACTCTGTACCAATCATGCACATTGAGATGGAAAAACCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

9.58

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 48	1.8e-06	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	110 - 199	2.3e-32	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	6 cut(s)	66, 76, 442, 546, 705, 748
AclI	AACGTT	1 cut(s)	251
AclWI	GGATC	3 cut(s)	12, 377, 629
AcsI	RAATTY	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	384, 867
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	620, 738, 835
AjiI	CACGTC	1 cut(s)	52
AluBI	AGCT	9 cut(s)	28, 73, 137, 328, 434, 511, 526, 541, 664
AluI	AGCT	9 cut(s)	28, 73, 137, 328, 434, 511, 526, 541, 664
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	86, 402
AlwI	GGATC	3 cut(s)	12, 377, 629
AoxI	GGCC	1 cut(s)	390
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 584, 616
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	134, 256
BanII	GRGCYC	2 cut(s)	75, 225
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	2 cut(s)	695, 880
BceAI	ACGGC	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	86, 402
BfaI	CTAG	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	3 cut(s)	66, 706, 749
BlsI	GCNGC	3 cut(s)	67, 707, 750
Bme1390I	CCNGG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	224, 656
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	275, 288, 431, 560
BpiI	GAAGAC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	639, 819
Bse1I	ACTGG	2 cut(s)	94, 348
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	639, 819
BseGI	GGATG	7 cut(s)	54, 90, 267, 337, 649, 676, 706
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	3 cut(s)	213, 720, 807
BseNI	ACTGG	2 cut(s)	94, 348
BseRI	GAGGAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	219, 680
BslFI	GGGAC	1 cut(s)	450
BsmAI	GTCTC	2 cut(s)	86, 402
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	2 cut(s)	485, 841
BsnI	GGCC	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	75, 225
Bsp1407I	TGTACA	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	4, 158, 369, 634, 759
BspACI	CCGC	6 cut(s)	66, 76, 442, 546, 705, 748
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	3 cut(s)	212, 721, 806
BspLI	GGNNCC	2 cut(s)	224, 656
BspPI	GGATC	3 cut(s)	12, 377, 629
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	94, 348
BssECI	CCNNGG	2 cut(s)	639, 819
BssMI	GATC	5 cut(s)	4, 158, 369, 634, 759
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	639, 819
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	432, 444, 771
BstDEI	CTNAG	3 cut(s)	199, 729, 793
BstF5I	GGATG	7 cut(s)	54, 90, 267, 337, 649, 676, 706
BstKTI	GATC	5 cut(s)	7, 161, 372, 637, 762
BstMAI	GTCTC	2 cut(s)	86, 402
BstMBI	GATC	5 cut(s)	4, 158, 369, 634, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	3 cut(s)	4, 158, 634
BstYI	RGATCY	3 cut(s)	4, 158, 634
BsuRI	GGCC	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	7 cut(s)	54, 90, 267, 337, 649, 676, 706
Cac8I	GCNNGC	3 cut(s)	432, 444, 771
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	383, 866
CviAII	CATG	3 cut(s)	469, 586, 874
CviQI	GTAC	2 cut(s)	383, 866
DdeI	CTNAG	3 cut(s)	199, 729, 793
DpnI	GATC	5 cut(s)	6, 160, 371, 636, 761
DpnII	GATC	5 cut(s)	4, 158, 369, 634, 759
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	639, 819
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	2 cut(s)	75, 225
Eco53kI	GAGCTC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	563
EcoT14I	CCWWGG	2 cut(s)	639, 819
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	2 cut(s)	75, 225
ErhI	CCWWGG	2 cut(s)	639, 819
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	3 cut(s)	472, 589, 877
FalI	AAGNNNNNCTT	2 cut(s)	145, 177
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	468, 585, 873
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	66, 706, 749
FokI	GGATG	7 cut(s)	41, 77, 274, 344, 656, 683, 713
FriOI	GRGCYC	2 cut(s)	75, 225
Fsp4HI	GCNGC	3 cut(s)	66, 706, 749
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	66, 706, 749
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	219, 680
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	472, 589, 877
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	41, 101, 409, 731
HpaII	CCGG	2 cut(s)	219, 680
HphI	GGTGA	2 cut(s)	134, 256
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	7 cut(s)	13, 59, 268, 369, 556, 718, 851
Hpy188III	TCNNGA	2 cut(s)	319, 668
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	3 cut(s)	41, 63, 122
HpyAV	CCTTC	2 cut(s)	382, 643
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	51, 251
HpyCH4V	TGCA	7 cut(s)	132, 301, 422, 500, 551, 839, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	3 cut(s)	199, 729, 793
HpySE526I	ACGT	2 cut(s)	51, 251
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	472, 589, 877
Kzo9I	GATC	5 cut(s)	4, 158, 369, 634, 759
LmnI	GCTCC	2 cut(s)	78, 228
LpnPI	CCDG	8 cut(s)	107, 232, 295, 314, 329, 444, 653, 693
LweI	GCATC	4 cut(s)	275, 288, 431, 560
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	51, 251
MaeIII	GTNAC	3 cut(s)	244, 724, 740
MalI	GATC	5 cut(s)	6, 160, 371, 636, 761
MboI	GATC	5 cut(s)	4, 158, 369, 634, 759
MboII	GAAGA	3 cut(s)	168, 561, 726
MfeI	CAATTG	1 cut(s)	898
MflI	RGATCY	3 cut(s)	4, 158, 634
MhlI	GDGCHC	2 cut(s)	75, 225
MluCI	AATT	5 cut(s)	292, 348, 563, 615, 898
MlyI	GAGTC	4 cut(s)	35, 95, 403, 740
MmeI	TCCRAC	3 cut(s)	36, 82, 764
MnlI	CCTC	8 cut(s)	44, 115, 118, 691, 724, 772, 802, 809
Mph1103I	ATGCAT	1 cut(s)	841
MseI	TTAA	2 cut(s)	179, 528
MslI	CAYNNNNRTG	2 cut(s)	479, 884
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	219, 680
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	898
Mva1269I	GAATGC	2 cut(s)	485, 841
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	5 cut(s)	4, 158, 369, 634, 759
NlaIII	CATG	3 cut(s)	472, 589, 877
NlaIV	GGNNCC	2 cut(s)	224, 656
NmeAIII	GCCGAG	2 cut(s)	94, 418
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	841
PceI	AGGCCT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	485, 841
PkrI	GCNGC	3 cut(s)	67, 707, 750
PleI	GAGTC	4 cut(s)	35, 95, 403, 739
PpsI	GAGTC	4 cut(s)	35, 95, 403, 739
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	224, 656
PsuI	RGATCY	3 cut(s)	4, 158, 634
RsaI	GTAC	2 cut(s)	384, 867
RsaNI	GTAC	2 cut(s)	383, 866
RseI	CAYNNNNRTG	2 cut(s)	479, 884
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	179, 528
SatI	GCNGC	3 cut(s)	66, 706, 749
Sau3AI	GATC	5 cut(s)	4, 158, 369, 634, 759
SchI	GAGTC	4 cut(s)	35, 95, 403, 740
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	75, 225
SfaNI	GCATC	4 cut(s)	275, 288, 431, 560
SmiMI	CAYNNNNRTG	2 cut(s)	479, 884
SmlI	CTYRAG	2 cut(s)	527, 695
SmoI	CTYRAG	2 cut(s)	527, 695
Sse9I	AATT	5 cut(s)	292, 348, 563, 615, 898
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	6 cut(s)	66, 76, 442, 546, 705, 748
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	639, 819
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	54, 254
TaqI	TCGA	5 cut(s)	30, 36, 99, 296, 578
TasI	AATT	5 cut(s)	292, 348, 563, 615, 898
TatI	WGTACW	1 cut(s)	382
TauI	GCSGC	3 cut(s)	68, 708, 751
Tru1I	TTAA	2 cut(s)	179, 528
Tru9I	TTAA	2 cut(s)	179, 528
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	463, 602, 735
TspGWI	ACGGA	1 cut(s)	562
Vha464I	CTTAAG	1 cut(s)	527
XapI	RAATTY	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.