Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

4250523 .. 4253050

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAAAATTTACGAAAAATTATTGATATTTTGTAGAGATCAAGTGAAGTTGTCAACCGTAAATCGAGACTTACATCATTTTAAAATTCGCAGCGCAAAATTCACTTCCCGCCATTTTCGTGAATGCTCAAATGGCAAGTGCAATGGCAATCGCAGCGCCAAACCCTCTCACTCTCTCTCCCCCTCCCTCCCTAAAACCCACCAATCAGCGAGAGATCCCATCTCAGAAAAAATGGATCTCTCCGACATAGCAAGGAAGCTCGACCTCTCCGACTCCAAGCACGTCATCCGACGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCTTCCATAATCGGCGTCGGCGAGGTTTGCAAAGCTGTGATTTGCTTAGAAATCGCCGCCACAAGATCGGGGCTCCTATTCGATCGGAAAAAGGCGATAATGTTGAGTGGGATGTCTGAAAAGGCTTACACCAGATCCTACAATTCGATGCAGAATGGCCTCGGGGTCAAGAACAAGCTGGATGTTAGAGAACTGGCAATTCAGTTTGGGTGTGTTCGGATCATTCCCTTTGTACAGAAGGCTTTGTCTCTTTACAAGACTCGGTTTCTTGCATCGTTGCCAGCTTCTCGGCGTGCAAGTGCCGATTTCACTCGACCTGTGTTCATTGCTGTGGCATTCTATTTGTGTGCAAAAAAACACAAGTTAAAGGTAGACAAGCTTAAGTTAATTGAGCTTTGTGGTGCATCTGAAACTGAATTCTCTTCCGTTTTGACTTCCATGAAGGACTTGTGCTTTGATGTTTGTGGGACTGAAAAGGAAAAGAAAGATCCCAAGGATGTGAAGGGGAACCGAGAGCTTCTAGATGTTTTGCCGGAGAAAAGGAAACTCGAGGATGGTGGCTATTCTTCCGATGAAGGAAACGAGCCTTCAAGTTACAAGCGGCACAAAAAGATGGAAAAGCATGCCTACGAGGGTTGGAAAACCTCAGTCCTCACATCTAATAAAGAAACCAAGGCAAAAGTTCTTTGCAAGCGGACCAGACAGACTAGCCTAAACTTTTTGAAGGATGTACACGTATCCGAAACTCAGAACTTGGAGGCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

367

Amino Acids

41.43

Weight (kDa)

9.59

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	6 cut(s)	109, 297, 307, 390, 934, 1027
AclWI	GGATC	5 cut(s)	209, 243, 462, 560, 815
AcsI	RAATTY	4 cut(s)	6, 84, 98, 749
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	2 cut(s)	567, 1065
AflII	CTTAAG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	1066
AgsI	TTSAA	2 cut(s)	924, 1057
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	8 cut(s)	259, 304, 368, 511, 617, 712, 727, 850
AluI	AGCT	8 cut(s)	259, 304, 368, 511, 617, 712, 727, 850
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	60, 317, 585
AlwI	GGATC	5 cut(s)	209, 243, 462, 560, 815
Ama87I	CYCGRG	2 cut(s)	494, 881
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	90, 153
ApoI	RAATTY	4 cut(s)	6, 84, 98, 749
ArsI	GACNNNNNNTTYG	4 cut(s)	311, 343, 770, 802
AspLEI	GCGC	2 cut(s)	95, 158
AspS9I	GGNCC	1 cut(s)	1029
AvaI	CYCGRG	2 cut(s)	494, 881
AvaII	GGWCC	1 cut(s)	1029
BanII	GRGCYC	2 cut(s)	306, 408
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	102, 165
BccI	CCATC	3 cut(s)	227, 881, 940
BceAI	ACGGC	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	1081
BcoDI	GTCTC	3 cut(s)	60, 317, 585
BfaI	CTAG	2 cut(s)	854, 1041
BfoI	RGCGCY	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	1081
BisI	GCNGC	5 cut(s)	91, 154, 297, 390, 935
BlsI	GCNGC	5 cut(s)	92, 155, 298, 391, 936
Bme18I	GGWCC	1 cut(s)	1029
BmeT110I	CYCGRG	2 cut(s)	494, 881
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	1029
BmiI	GGNNCC	2 cut(s)	407, 842
BmsI	GCATC	3 cut(s)	471, 614, 746
BsaAI	YACGTR	1 cut(s)	1069
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	493, 825, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse1I	ACTGG	2 cut(s)	325, 531
Bse3DI	GCAATG	2 cut(s)	148, 657
BseDI	CCNNGG	3 cut(s)	493, 825, 1005
BseGI	GGATG	7 cut(s)	285, 321, 450, 520, 835, 892, 1066
BseMI	GCAATG	2 cut(s)	148, 657
BseMII	CTCAG	3 cut(s)	237, 993, 1094
BseNI	ACTGG	2 cut(s)	325, 531
BseXI	GCAGC	2 cut(s)	102, 165
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	492
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	2 cut(s)	494, 881
BsiSI	CCGG	1 cut(s)	866
BslFI	GGGAC	1 cut(s)	814
BsmAI	GTCTC	3 cut(s)	60, 317, 585
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	814
BsmI	GAATGC	2 cut(s)	128, 668
BsnI	GGCC	1 cut(s)	492
BsoBI	CYCGRG	2 cut(s)	494, 881
Bsp1286I	GDGCHC	2 cut(s)	306, 408
Bsp1407I	TGTACA	2 cut(s)	565, 1063
Bsp143I	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
BspACI	CCGC	6 cut(s)	109, 297, 307, 390, 934, 1027
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	3 cut(s)	236, 992, 1093
BspLI	GGNNCC	2 cut(s)	407, 842
BspPI	GGATC	5 cut(s)	209, 243, 462, 560, 815
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	148, 657
BsrGI	TGTACA	2 cut(s)	565, 1063
BsrI	ACTGG	2 cut(s)	325, 531
BssECI	CCNNGG	3 cut(s)	493, 825, 1005
BssMI	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	825, 1005
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	340, 760
BstACI	GRCGYC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	713
BstAUI	TGTACA	2 cut(s)	565, 1063
BstBAI	YACGTR	1 cut(s)	1069
BstC8I	GCNNGC	4 cut(s)	615, 627, 957, 1025
BstDEI	CTNAG	4 cut(s)	223, 379, 979, 1080
BstF5I	GGATG	7 cut(s)	285, 321, 450, 520, 835, 892, 1066
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	95, 158
BstKTI	GATC	8 cut(s)	40, 217, 238, 401, 418, 470, 555, 823
BstMAI	GTCTC	3 cut(s)	60, 317, 585
BstMBI	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 153, 315, 360
BstNSI	RCATGY	1 cut(s)	959
BstV1I	GCAGC	2 cut(s)	102, 165
BstX2I	RGATCY	4 cut(s)	214, 235, 467, 820
BstYI	RGATCY	4 cut(s)	214, 235, 467, 820
BsuI	GTATCC	1 cut(s)	1081
BsuRI	GGCC	1 cut(s)	492
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	7 cut(s)	285, 321, 450, 520, 835, 892, 1066
Cac8I	GCNNGC	4 cut(s)	615, 627, 957, 1025
CfoI	GCGC	2 cut(s)	95, 158
Cfr13I	GGNCC	1 cut(s)	1029
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	566, 1064
CviAII	CATG	2 cut(s)	772, 956
CviQI	GTAC	2 cut(s)	566, 1064
DdeI	CTNAG	4 cut(s)	223, 379, 979, 1080
DpnI	GATC	8 cut(s)	39, 216, 237, 400, 417, 469, 554, 822
DpnII	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	340, 760
EarI	CTCTTC	2 cut(s)	340, 760
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	825, 1005
Eco24I	GRGCYC	2 cut(s)	306, 408
Eco47I	GGWCC	1 cut(s)	1029
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	2 cut(s)	494, 881
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	749
EcoT14I	CCWWGG	2 cut(s)	825, 1005
EcoT38I	GRGCYC	2 cut(s)	306, 408
ErhI	CCWWGG	2 cut(s)	825, 1005
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	775, 959
FaiI	YATR	5 cut(s)	248, 341, 773, 957, 1099
FaqI	GGGAC	1 cut(s)	814
FatI	CATG	2 cut(s)	771, 955
FauI	CCCGC	1 cut(s)	116
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	5 cut(s)	91, 154, 297, 390, 935
FokI	GGATG	7 cut(s)	272, 308, 457, 527, 842, 899, 1073
FriOI	GRGCYC	2 cut(s)	306, 408
Fsp4HI	GCNGC	5 cut(s)	91, 154, 297, 390, 935
FspBI	CTAG	2 cut(s)	854, 1041
GlaI	GCGC	2 cut(s)	94, 157
GluI	GCNGC	5 cut(s)	91, 154, 297, 390, 935
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	2 cut(s)	95, 158
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	775, 959
Hin6I	GCGC	2 cut(s)	93, 156
HinP1I	GCGC	2 cut(s)	93, 156
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	3 cut(s)	272, 332, 592
HpaII	CCGG	1 cut(s)	866
Hpy166II	GTNNAC	3 cut(s)	54, 706, 1066
Hpy188III	TCNNGA	4 cut(s)	65, 119, 502, 854
Hpy8I	GTNNAC	3 cut(s)	54, 706, 1066
Hpy99I	CGWCG	2 cut(s)	294, 353
HpyAV	CCTTC	6 cut(s)	565, 769, 829, 902, 930, 1051
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	2 cut(s)	282, 1068
HpyCH4V	TGCA	8 cut(s)	141, 363, 484, 605, 629, 683, 737, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 153, 315, 360
HpyF3I	CTNAG	4 cut(s)	223, 379, 979, 1080
HpySE526I	ACGT	2 cut(s)	282, 1068
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	775, 959
HspAI	GCGC	2 cut(s)	93, 156
Kzo9I	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
LmnI	GCTCC	2 cut(s)	309, 411
LpnPI	CCDG	8 cut(s)	338, 478, 497, 512, 627, 663, 879, 1045
Lsp1109I	GCAGC	2 cut(s)	102, 165
LweI	GCATC	3 cut(s)	471, 614, 746
MaeI	CTAG	2 cut(s)	854, 1041
MaeII	ACGT	2 cut(s)	282, 1068
MaeIII	GTNAC	1 cut(s)	926
MalI	GATC	8 cut(s)	39, 216, 237, 400, 417, 469, 554, 822
MboI	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
MboII	GAAGA	3 cut(s)	327, 747, 891
MflI	RGATCY	4 cut(s)	214, 235, 467, 820
MhlI	GDGCHC	2 cut(s)	306, 408
MluCI	AATT	8 cut(s)	6, 17, 84, 98, 475, 531, 720, 749
MlyI	GAGTC	3 cut(s)	266, 326, 586
MmeI	TCCRAC	4 cut(s)	267, 294, 313, 950
MseI	TTAA	4 cut(s)	81, 698, 714, 719
MslI	CAYNNNNRTG	2 cut(s)	117, 662
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	866
Mva1269I	GAATGC	2 cut(s)	128, 668
MwoI	GCNNNNNNNGC	4 cut(s)	132, 153, 315, 360
NdeII	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
NlaIII	CATG	2 cut(s)	775, 959
NlaIV	GGNNCC	2 cut(s)	407, 842
NmeAIII	GCCGAG	2 cut(s)	325, 601
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PaeR7I	CTCGAG	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 351
PctI	GAATGC	2 cut(s)	128, 668
PkrI	GCNGC	5 cut(s)	92, 155, 298, 391, 936
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	3 cut(s)	266, 326, 586
PpsI	GAGTC	3 cut(s)	266, 326, 586
Ppu21I	YACGTR	1 cut(s)	1069
Psp124BI	GAGCTC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	407, 842
PspPI	GGNCC	1 cut(s)	1029
PspXI	VCTCGAGB	1 cut(s)	881
PsuI	RGATCY	4 cut(s)	214, 235, 467, 820
PvuI	CGATCG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	567, 1065
RsaNI	GTAC	2 cut(s)	566, 1064
RseI	CAYNNNNRTG	2 cut(s)	117, 662
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	4 cut(s)	81, 698, 714, 719
SatI	GCNGC	5 cut(s)	91, 154, 297, 390, 935
Sau3AI	GATC	8 cut(s)	37, 214, 235, 398, 415, 467, 552, 820
Sau96I	GGNCC	1 cut(s)	1029
SchI	GAGTC	3 cut(s)	266, 326, 586
SduI	GDGCHC	2 cut(s)	306, 408
SfaNI	GCATC	3 cut(s)	471, 614, 746
Sfr274I	CTCGAG	1 cut(s)	881
SinI	GGWCC	1 cut(s)	1029
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	2 cut(s)	117, 662
SmlI	CTYRAG	2 cut(s)	713, 881
SmoI	CTYRAG	2 cut(s)	713, 881
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	8 cut(s)	6, 17, 84, 98, 475, 531, 720, 749
SsiI	CCGC	6 cut(s)	109, 297, 307, 390, 934, 1027
SspMI	CTAG	2 cut(s)	854, 1041
SstI	GAGCTC	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	825, 1005
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	2 cut(s)	285, 1071
TaqI	TCGA	7 cut(s)	64, 261, 330, 414, 479, 646, 882
TasI	AATT	8 cut(s)	6, 17, 84, 98, 475, 531, 720, 749
TatI	WGTACW	2 cut(s)	565, 1063
TauI	GCSGC	3 cut(s)	299, 392, 937
Tru1I	TTAA	4 cut(s)	81, 698, 714, 719
Tru9I	TTAA	4 cut(s)	81, 698, 714, 719
TseI	GCWGC	2 cut(s)	90, 153
TspDTI	ATGAA	4 cut(s)	17, 646, 788, 921
TspGWI	ACGGA	1 cut(s)	748
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	1029
XapI	RAATTY	4 cut(s)	6, 84, 98, 749
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	1 cut(s)	959
XhoI	CTCGAG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	2 cut(s)	854, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.