Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013359

Physical Location & Seq

Genomic Coordinates Reverse (-)

64917941 .. 64920570

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG400500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATCTTTCAGACATAGCCAAGAAGCTCGACCTCTCCGACTCCAAGCAAGTCGTCCGCAGAGCCGCCGAGCTCCGCCGTCTCTGCGACATCCAGTTCGACTCTTCCGTTATCGGCGTCGGAGAGGTGTGCAAGGCCGTGATCTGCTTGGAAATAGCCGCAACAAGGTCGGGGATTTTGTTTGATCGGCAAAAGGCCATAAAGTTGAGTGGGATGTCGGAAAAAGCTTACACCAGATCCTTTAATTCCTTGCAGAACGGCCTCGGCGTCAAGAACAAACTGGATGTTAGAGAACTTGCGATTCAGTTTGGGTGTGTTAGGATCATTCCCTTTGTGCAAAAGGGTTTATCCCTTTACAAAACTCGGTTTCTTGCATCATTGTTGCCTTCTCGGCGGGCAGGTGCTGACTTCACTCGACCTGTGTTTGTTGCTGTTGCATTCTATTTGTGCGCAAAGAAACACAAGCTAAAGGTGGACAAGATTAAGTTGATTGAGCTCAGTGGTACTTCTGAAGCTGAATTCTCTTCGGTTTCTGTTTCCATGAAGGACTTGTGCTTCGATGTTTATGGGACTGAAAAGGAAAAGAAAGATCCCAAGGAGGTTAAGGGGAACCGAGGTAGGTGTCTGCTGCTGAGTTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009987 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

ORC6

Protein Analysis

214

Amino Acids

23.84

Weight (kDa)

9.56

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORC6	PF05460	3 - 91	4.7e-24	Origin recognition complex subunit 6 (ORC6)
ORC6_2nd	PF21913	94 - 184	1.8e-33	ORC6 second cyclin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26840
fragaria_vesca	FvH4_4g31460 FvH4_4g31460 FvH4_4g31460
malus_domestica	MD13G1073100.v1.1 MD16G1074100.v1.1
prunus_persica	Prupe.1G273100_v2.0.a1
pyrus_communis	pycom13g06550
rosa_chinensis	RchiOBHm_Chr4g0439951
rosa_laevigata	RLG00000006221
rosa_multiflora	Rmu_sc0006000.1_g000003 Rmu_sc0023432.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380900
rosa_rugosa	Rorug04G0322600
rosa_samantha	Rh4AG373700 Rh4BG386000 Rh4CG400500
rosa_wichuraiana	Rw4G031960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc16I	TGCGCA	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	389
AciI	CCGC	5 cut(s)	58, 66, 76, 159, 394
AclWI	GGATC	4 cut(s)	12, 231, 329, 584
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	2 cut(s)	117, 267
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	165
AluBI	AGCT	6 cut(s)	28, 73, 227, 466, 496, 515
AluI	AGCT	6 cut(s)	28, 73, 227, 466, 496, 515
Alw21I	GWGCWC	2 cut(s)	75, 498
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	4 cut(s)	12, 231, 329, 584
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	3 cut(s)	135, 195, 259
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 539, 571
AspLEI	GCGC	1 cut(s)	452
BanII	GRGCYC	2 cut(s)	75, 498
Bbv12I	GWGCWC	2 cut(s)	75, 498
BbvI	GCAGC	1 cut(s)	615
BceAI	ACGGC	3 cut(s)	63, 122, 274
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	389
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	3 cut(s)	66, 159, 629
BlsI	GCNGC	3 cut(s)	67, 160, 630
BmiI	GGNNCC	1 cut(s)	611
BmsI	GCATC	1 cut(s)	383
BsaHI	GRCGYC	2 cut(s)	117, 267
BsaJI	CCNNGG	3 cut(s)	262, 594, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	94, 285
BseDI	CCNNGG	3 cut(s)	262, 594, 613
BseGI	GGATG	3 cut(s)	90, 219, 289
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	511, 623
BseNI	ACTGG	2 cut(s)	94, 285
BseXI	GCAGC	1 cut(s)	615
BshFI	GGCC	3 cut(s)	137, 197, 261
BsiHKAI	GWGCWC	2 cut(s)	75, 498
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	137, 197, 261
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
BspACI	CCGC	5 cut(s)	58, 66, 76, 159, 394
BspANI	GGCC	3 cut(s)	137, 197, 261
BspCNI	CTCAG	2 cut(s)	510, 624
BspLI	GGNNCC	1 cut(s)	611
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	4 cut(s)	12, 231, 329, 584
BsrI	ACTGG	2 cut(s)	94, 285
BssECI	CCNNGG	3 cut(s)	262, 594, 613
BssMI	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
BssNI	GRCGYC	2 cut(s)	117, 267
BssT1I	CCWWGG	1 cut(s)	594
Bst6I	CTCTTC	2 cut(s)	109, 529
BstACI	GRCGYC	2 cut(s)	117, 267
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	497, 632
BstF5I	GGATG	3 cut(s)	90, 219, 289
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	6 cut(s)	7, 144, 187, 239, 324, 592
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 391
BstV1I	GCAGC	1 cut(s)	615
BstX2I	RGATCY	3 cut(s)	4, 236, 589
BstYI	RGATCY	3 cut(s)	4, 236, 589
BsuRI	GGCC	3 cut(s)	137, 197, 261
BtsCI	GGATG	3 cut(s)	90, 219, 289
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	452
CseI	GACGC	2 cut(s)	106, 256
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	2 cut(s)	497, 632
DpnI	GATC	6 cut(s)	6, 143, 186, 238, 323, 591
DpnII	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
Eam1104I	CTCTTC	2 cut(s)	109, 529
EarI	CTCTTC	2 cut(s)	109, 529
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	73, 496
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	2 cut(s)	75, 498
Eco53kI	GAGCTC	2 cut(s)	73, 496
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	2 cut(s)	73, 496
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	75, 498
ErhI	CCWWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	544
FaiI	YATR	4 cut(s)	17, 200, 542, 567
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	1 cut(s)	540
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	66, 159, 629
FokI	GGATG	3 cut(s)	77, 226, 296
FriOI	GRGCYC	2 cut(s)	75, 498
Fsp4HI	GCNGC	3 cut(s)	66, 159, 629
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	3 cut(s)	66, 159, 629
HaeIII	GGCC	3 cut(s)	137, 197, 261
HgaI	GACGC	2 cut(s)	106, 256
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	2 cut(s)	117, 267
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	225
HinfI	GANTC	3 cut(s)	41, 101, 301
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	5 cut(s)	13, 40, 122, 220, 511
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	396, 538
HpyCH4V	TGCA	5 cut(s)	132, 253, 337, 374, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 391
HpyF3I	CTNAG	2 cut(s)	497, 632
Hsp92I	GRCGYC	2 cut(s)	117, 267
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	107, 247, 266, 384, 432
Lsp1109I	GCAGC	1 cut(s)	615
LweI	GCATC	1 cut(s)	383
MalI	GATC	6 cut(s)	6, 143, 186, 238, 323, 591
MboI	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
MboII	GAAGA	2 cut(s)	96, 516
MflI	RGATCY	3 cut(s)	4, 236, 589
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	2 cut(s)	244, 518
MlyI	GAGTC	2 cut(s)	35, 95
MmeI	TCCRAC	3 cut(s)	63, 100, 198
MnlI	CCTC	5 cut(s)	44, 118, 272, 592, 608
MseI	TTAA	3 cut(s)	243, 483, 603
Mva1269I	GAATGC	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	84, 391
NdeII	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	1 cut(s)	611
NmeAIII	GCCGAG	3 cut(s)	94, 243, 370
NsbI	TGCGCA	1 cut(s)	451
PaqCI	CACCTGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 105, 264
PctI	GAATGC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	67, 160, 630
PleI	GAGTC	2 cut(s)	35, 95
PpsI	GAGTC	2 cut(s)	35, 95
Psp124BI	GAGCTC	2 cut(s)	75, 498
PspN4I	GGNNCC	1 cut(s)	611
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	4, 236, 589
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	75, 498
SaqAI	TTAA	3 cut(s)	243, 483, 603
SatI	GCNGC	3 cut(s)	66, 159, 629
Sau3AI	GATC	6 cut(s)	4, 141, 184, 236, 321, 589
SchI	GAGTC	2 cut(s)	35, 95
SduI	GDGCHC	2 cut(s)	75, 498
SfaNI	GCATC	1 cut(s)	383
Sse9I	AATT	2 cut(s)	244, 518
SsiI	CCGC	5 cut(s)	58, 66, 76, 159, 394
SstI	GAGCTC	2 cut(s)	75, 498
StyI	CCWWGG	1 cut(s)	594
TaqI	TCGA	4 cut(s)	30, 99, 415, 558
TasI	AATT	2 cut(s)	244, 518
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	243, 483, 603
Tru9I	TTAA	3 cut(s)	243, 483, 603
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	628
TspDTI	ATGAA	1 cut(s)	557
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.