AT1G27440

Exostosin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9528967 .. 9531489
2523 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27440.1

Sequence Viewer

Length: 1239 bp
ATGAAAATCCACTCTTGCCTCTCCGCCATTCTTCTGTTCCTCTTCTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGGACAGAGCGAATTTCAGGAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTTAAGGTTTATGTATATGAGCTTCCAAGCAAGTACAACAAGAAATTACTGCAAAAGGATCCTCGATGTCTTACACACATGTTTGCTGCTGAGATTTTTATGCACAGGTTCCTTTTATCTAGTCCTGTTCGAACGCGTAATCCTGATGAAGCTGATTGGTTTTACACGCCAATTTATCCTACTTGCGACCTCACTCCTACCGGCTTGCCATTACCGTTTAAATCGCCGCGTATGATGAGAAGTTCGATACAACTAATCTCATCAAATTGGCCTTATTGGAATCGGACTGAAGGAGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAGGAGGAAAAAGCCATTGAAAGAGGGATACTTCCACTACTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGGAACCATGTCTGTTTGGACGAAGGCTCGATCACTATTCCTCCTTTTGCACCTCCACAGAAGATGCAGGCCCATTTTATTCCTCCAGATATTCCACGCTCTATCTTTGTCTACTTCCGCGGTTTATTTTATGATGTTAACAACGACCCCGAAGGTGGATATTATGCAAGAGGTGCAAGAGCAGCGGTGTGGGAGAACTTCAAGAACAACCCTTTGTTTGACATCTCAACAGATCACCCGACAACATACTACGAAGACATGCAGAGAGCCATCTTCTGTCTATGTCCTCTAGGATGGGCTCCATGGAGCCCTAGGTTAGTTGAAGCAGTTGTGTTTGGGTGCATTCCAGTTATCATAGCAGACGACATAGTACTGCCTTTCGCAGACGCCATCCCCTGGGAAGAAATAGGAGTCTTTGTTGCGGAAAAAGACGTCCCTGAACTAGACACGATCCTAACCTCAATACCAACAGAAGTGATCCTCAGAAAACAGAGACTCCTCGCAAATCCTTCGATGAAACGAGCCATGCTTTTCCCTCAACCTGCACAACCAGGGGATGCATTCCATCAGATACTTAACGGGCTAGCTCGGAAGTTACCCCACGACAAAAGCATATACTTGAAGACAGGTGAGAAGGCACTGAACTGGACTGCTGGTCCGGTTGCTGACCTGAAACCTTGGTAA

Protein Analysis

412

Amino Acids

46.84

Weight (kDa)

6.6

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 45 - 340 6.1e-77 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27440
fragaria_vesca FvH4_4g22570
malus_domestica MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica Prupe.1G214300_v2.0.a1
pyrus_communis pycom13g11460 pycom16g11210
rosa_chinensis RchiOBHm_Chr4g0428811
rosa_laevigata RLG00000007123
rosa_multiflora Rmu_sc0009525.1_g000001
rosa_roxburghii Rroxscaffold_5G00370490
rosa_rugosa Rorug04G0229200
rosa_samantha Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana Rw4G024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 951
AccI GTMKAC 1 cut(s) 666
AccII CGCG 3 cut(s) 271, 364, 675
AciI CCGC 7 cut(s) 24, 60, 362, 673, 675, 740, 977
AclWI GGATC 5 cut(s) 116, 188, 201, 1000, 1027
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 942, 987
AfaI GTAC 2 cut(s) 170, 927
AfiI CCNNNNNNNGG 3 cut(s) 481, 710, 951
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 213, 269
AgsI TTSAA 4 cut(s) 500, 757, 878, 1177
AhdI GACNNNNNGTC 2 cut(s) 549, 1209
AjnI CCWGG 2 cut(s) 950, 1105
AloI GAACNNNNNNTCC 2 cut(s) 259, 291
AluBI AGCT 6 cut(s) 136, 157, 287, 431, 467, 1142
AluI AGCT 6 cut(s) 136, 157, 287, 431, 467, 1142
Alw26I GTCTC 1 cut(s) 1042
AlwI GGATC 5 cut(s) 116, 188, 201, 1000, 1027
AoxI GGCC 2 cut(s) 404, 624
ApeKI GCWGC 2 cut(s) 221, 737
ApoI RAATTY 1 cut(s) 87
AspA2I CCTAGG 1 cut(s) 866
AspS9I GGNCC 2 cut(s) 625, 1211
AsuHPI GGTGA 3 cut(s) 116, 782, 1196
AsuII TTCGAA 1 cut(s) 265
AsuNHI GCTAGC 1 cut(s) 1138
AvaII GGWCC 1 cut(s) 1211
AvrII CCTAGG 1 cut(s) 866
BaeGI GKGCMC 1 cut(s) 453
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 2 cut(s) 856, 866
BarI GAAGNNNNNNTAC 2 cut(s) 141, 173
BbsI GAAGAC 2 cut(s) 816, 1184
BbvI GCAGC 2 cut(s) 208, 749
BccI CCATC 4 cut(s) 833, 843, 953, 1128
BcgI CGANNNNNNTGC 2 cut(s) 1047, 1081
BciT130I CCWGG 2 cut(s) 952, 1107
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 1042
BfaI CTAG 5 cut(s) 255, 845, 867, 998, 1139
BfrI CTTAAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 1105
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 3 cut(s) 222, 362, 738
BlnI CCTAGG 1 cut(s) 866
BlsI GCNGC 3 cut(s) 223, 363, 739
BmcAI AGTACT 1 cut(s) 927
Bme1390I CCNGG 2 cut(s) 952, 1107
Bme18I GGWCC 1 cut(s) 1211
BmeRI GACNNNNNGTC 2 cut(s) 549, 1209
BmgT120I GGNCC 2 cut(s) 625, 1211
BmiI GGNNCC 5 cut(s) 195, 245, 560, 855, 863
BmrFI CCNGG 2 cut(s) 952, 1107
BmsI GCATC 2 cut(s) 609, 1102
BmtI GCTAGC 1 cut(s) 1142
BpiI GAAGAC 2 cut(s) 816, 1184
BpmI CTGGAG 2 cut(s) 506, 624
Bpu14I TTCGAA 1 cut(s) 265
BsaHI GRCGYC 2 cut(s) 942, 987
BsaJI CCNNGG 7 cut(s) 673, 857, 866, 950, 951, 1106, 1232
BsaWI WCCGGW 1 cut(s) 1213
BsaXI ACNNNNNCTCC 6 cut(s) 580, 610, 957, 987, 1035, 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 710, 951
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 3 cut(s) 125, 902, 1205
BseBI CCWGG 2 cut(s) 952, 1107
BseDI CCNNGG 7 cut(s) 673, 857, 866, 950, 951, 1106, 1232
BseGI GGATG 4 cut(s) 124, 854, 945, 1117
BseLI CCNNNNNNNGG 3 cut(s) 481, 710, 951
BseMII CTCAG 2 cut(s) 216, 1051
BseNI ACTGG 3 cut(s) 125, 902, 1205
BseRI GAGGAG 1 cut(s) 1043
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 2 cut(s) 208, 749
BsgI GTGCAG 1 cut(s) 1083
Bsh1236I CGCG 3 cut(s) 271, 364, 675
BshFI GGCC 2 cut(s) 406, 626
BsiSI CCGG 2 cut(s) 336, 1214
BslFI GGGAC 1 cut(s) 974
BslI CCNNNNNNNGG 3 cut(s) 481, 710, 951
BsmAI GTCTC 1 cut(s) 1042
BsmFI GGGAC 1 cut(s) 974
BsmI GAATGC 2 cut(s) 897, 1115
BsnI GGCC 2 cut(s) 406, 626
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 453, 856, 866
Bsp143I GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
Bsp19I CCATGG 1 cut(s) 857
BspACI CCGC 7 cut(s) 24, 60, 362, 673, 675, 740, 977
BspANI GGCC 2 cut(s) 406, 626
BspCNI CTCAG 2 cut(s) 217, 1050
BspFNI CGCG 3 cut(s) 271, 364, 675
BspLI GGNNCC 5 cut(s) 195, 245, 560, 855, 863
BspMI ACCTGC 1 cut(s) 1105
BspOI GCTAGC 1 cut(s) 1142
BspPI GGATC 5 cut(s) 116, 188, 201, 1000, 1027
BspT104I TTCGAA 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 3 cut(s) 125, 902, 1205
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 7 cut(s) 673, 857, 866, 950, 951, 1106, 1232
BssMI GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
BssNI GRCGYC 2 cut(s) 942, 987
BssT1I CCWWGG 3 cut(s) 857, 866, 1232
Bst2UI CCWGG 2 cut(s) 952, 1107
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 2 cut(s) 942, 987
BstAFI CTTAAG 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 728
BstBI TTCGAA 1 cut(s) 265
BstC8I GCNNGC 5 cut(s) 341, 469, 528, 624, 1140
BstDEI CTNAG 2 cut(s) 225, 1037
BstDSI CCRYGG 2 cut(s) 673, 857
BstF5I GGATG 4 cut(s) 124, 854, 945, 1117
BstFNI CGCG 3 cut(s) 271, 364, 675
BstKTI GATC 7 cut(s) 124, 196, 436, 588, 790, 1008, 1035
BstMAI GTCTC 1 cut(s) 1042
BstMBI GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
BstMWI GCNNNNNNNGC 3 cut(s) 59, 728, 737
BstNI CCWGG 2 cut(s) 952, 1107
BstNSI RCATGY 2 cut(s) 217, 817
BstSCI CCNGG 2 cut(s) 950, 1105
BstSLI GKGCMC 1 cut(s) 453
BstUI CGCG 3 cut(s) 271, 364, 675
BstV1I GCAGC 2 cut(s) 208, 749
BstV2I GAAGAC 2 cut(s) 816, 1184
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 501
BsuRI GGCC 2 cut(s) 406, 626
BtgI CCRYGG 2 cut(s) 673, 857
BtsCI GGATG 4 cut(s) 124, 854, 945, 1117
BtsIMutI CAGTG 2 cut(s) 132, 1193
BveI ACCTGC 1 cut(s) 1105
Cac8I GCNNGC 5 cut(s) 341, 469, 528, 624, 1140
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 625, 1211
Cfr42I CCGCGG 1 cut(s) 676
CseI GACGC 1 cut(s) 950
Csp6I GTAC 2 cut(s) 169, 926
CviAII CATG 6 cut(s) 214, 455, 563, 814, 858, 1081
CviQI GTAC 2 cut(s) 169, 926
DdeI CTNAG 2 cut(s) 225, 1037
DpnI GATC 7 cut(s) 123, 195, 435, 587, 789, 1007, 1034
DpnII GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
DraI TTTAAA 1 cut(s) 355
DriI GACNNNNNGTC 2 cut(s) 549, 1209
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 2 cut(s) 549, 1209
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 3 cut(s) 857, 866, 1232
Eco24I GRGCYC 2 cut(s) 856, 866
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 950, 1105
EcoT14I CCWWGG 3 cut(s) 857, 866, 1232
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 2 cut(s) 856, 866
ErhI CCWWGG 3 cut(s) 857, 866, 1232
FaeI CATG 6 cut(s) 217, 458, 566, 817, 861, 1084
FaqI GGGAC 1 cut(s) 974
FatI CATG 6 cut(s) 213, 454, 562, 813, 857, 1080
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 222, 362, 738
FokI GGATG 4 cut(s) 131, 861, 932, 1124
FriOI GRGCYC 2 cut(s) 856, 866
Fsp4HI GCNGC 3 cut(s) 222, 362, 738
FspBI CTAG 5 cut(s) 255, 845, 867, 998, 1139
GluI GCNGC 3 cut(s) 222, 362, 738
GsuI CTGGAG 2 cut(s) 506, 624
HaeIII GGCC 2 cut(s) 406, 626
HapII CCGG 2 cut(s) 336, 1214
HgaI GACGC 1 cut(s) 950
Hin1I GRCGYC 2 cut(s) 942, 987
Hin1II CATG 6 cut(s) 217, 458, 566, 817, 861, 1084
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 3 cut(s) 415, 966, 1050
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 2 cut(s) 336, 1214
HphI GGTGA 3 cut(s) 116, 782, 1196
Hpy166II GTNNAC 2 cut(s) 667, 694
Hpy188I TCNGA 6 cut(s) 78, 420, 543, 1040, 1125, 1146
Hpy188III TCNNGA 5 cut(s) 93, 278, 482, 641, 757
Hpy8I GTNNAC 2 cut(s) 667, 694
HpyAV CCTTC 5 cut(s) 419, 572, 701, 1074, 1183
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 987
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 728, 737
HpyF3I CTNAG 2 cut(s) 225, 1037
HpySE526I ACGT 1 cut(s) 987
Hsp92I GRCGYC 2 cut(s) 942, 987
Hsp92II CATG 6 cut(s) 217, 458, 566, 817, 861, 1084
Ksp22I TGATCA 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 694
KspI CCGCGG 1 cut(s) 676
Kzo9I GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
LmnI GCTCC 4 cut(s) 428, 464, 859, 861
Lsp1109I GCAGC 2 cut(s) 208, 749
LweI GCATC 2 cut(s) 609, 1102
MaeI CTAG 5 cut(s) 255, 845, 867, 998, 1139
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 1 cut(s) 1149
MalI GATC 7 cut(s) 123, 195, 435, 587, 789, 1007, 1034
MboI GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
MboII GAAGA 9 cut(s) 23, 34, 37, 48, 628, 820, 821, 968, 1189
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 453, 856, 866
MluCI AATT 4 cut(s) 87, 179, 306, 400
MluI ACGCGT 1 cut(s) 269
MlyI GAGTC 2 cut(s) 975, 1044
Mph1103I ATGCAT 1 cut(s) 1117
MseI TTAA 4 cut(s) 138, 354, 693, 1131
MspA1I CMGCKG 2 cut(s) 675, 740
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 2 cut(s) 336, 1214
MspR9I CCNGG 2 cut(s) 952, 1107
Mva1269I GAATGC 2 cut(s) 897, 1115
MvaI CCWGG 2 cut(s) 952, 1107
MvnI CGCG 3 cut(s) 271, 364, 675
MwoI GCNNNNNNNGC 3 cut(s) 59, 728, 737
NcoI CCATGG 1 cut(s) 857
NdeII GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
NheI GCTAGC 1 cut(s) 1138
NlaIII CATG 6 cut(s) 217, 458, 566, 817, 861, 1084
NlaIV GGNNCC 5 cut(s) 195, 245, 560, 855, 863
NsiI ATGCAT 1 cut(s) 1117
NspI RCATGY 2 cut(s) 217, 817
NspV TTCGAA 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 951
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 2 cut(s) 897, 1115
PfeI GAWTC 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 951
PkrI GCNGC 3 cut(s) 223, 363, 739
PleI GAGTC 2 cut(s) 974, 1044
PpsI GAGTC 2 cut(s) 974, 1044
PscI ACATGT 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 950, 1105
PspGI CCWGG 2 cut(s) 950, 1105
PspN4I GGNNCC 5 cut(s) 195, 245, 560, 855, 863
PspPI GGNCC 2 cut(s) 625, 1211
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 170, 927
RsaNI GTAC 2 cut(s) 169, 926
SacII CCGCGG 1 cut(s) 676
SaqAI TTAA 4 cut(s) 138, 354, 693, 1131
SatI GCNGC 3 cut(s) 222, 362, 738
Sau3AI GATC 7 cut(s) 121, 193, 433, 585, 787, 1005, 1032
Sau96I GGNCC 2 cut(s) 625, 1211
ScaI AGTACT 1 cut(s) 927
SchI GAGTC 2 cut(s) 975, 1044
ScrFI CCNGG 2 cut(s) 952, 1107
SduI GDGCHC 3 cut(s) 453, 856, 866
SfaNI GCATC 2 cut(s) 609, 1102
Sfr303I CCGCGG 1 cut(s) 676
SfuI TTCGAA 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 676
SinI GGWCC 1 cut(s) 1211
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 87, 179, 306, 400
SsiI CCGC 7 cut(s) 24, 60, 362, 673, 675, 740, 977
SspMI CTAG 5 cut(s) 255, 845, 867, 998, 1139
StyD4I CCNGG 2 cut(s) 950, 1105
StyI CCWWGG 3 cut(s) 857, 866, 1232
TaaI ACNGT 1 cut(s) 351
TaiI ACGT 1 cut(s) 990
TaqI TCGA 5 cut(s) 199, 265, 380, 584, 1067
TasI AATT 4 cut(s) 87, 179, 306, 400
TatI WGTACW 2 cut(s) 168, 925
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 4 cut(s) 138, 354, 693, 1131
Tru9I TTAA 4 cut(s) 138, 354, 693, 1131
TscAI CASTG 2 cut(s) 132, 1200
TseI GCWGC 2 cut(s) 221, 737
TspDTI ATGAA 3 cut(s) 17, 297, 1085
TspRI CASTG 2 cut(s) 132, 1200
Van91I CCANNNNNTGG 1 cut(s) 951
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 1211
XapI RAATTY 1 cut(s) 87
XceI RCATGY 2 cut(s) 217, 817
XmaJI CCTAGG 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 5 cut(s) 255, 845, 867, 998, 1139
ZraI GACGTC 1 cut(s) 988
ZrmI AGTACT 1 cut(s) 927
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.