MD16G1141600.v1.1

beta-1,4-xylosyltransferase IRX10

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
10915822 .. 10918676
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1141600.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGAGATCGCAAATGTGGGTTCTTGCTGTTCTTGTTGTTTGTGGTTTTGCTTGTGGAGTTGGAGCTGATCAGACTGTAAGAACAGAGCGGATTTCGGGAAGTGCTGGTGATGTCTTGGAGGATAATCCAGTTGGAAGGTTGAAGGTTTATGTGTATGAGCTACCTAGCAAATACAACAAGAAAATCCTTCAGAAAGACCCGAGATGTCTCAACCATATGTTTGCTGCTGAGATCTATATGCATCGGTTCCTCTTATCCAGCCCAGTTAGAACCCATAATCCGGAGGAAGCAGATTGGTTTTATACTCCTATCTACCCTACTTGTGACCTCACCCCCACTGGCTTGCCATTGCCCTTCAAGTCACCACGGATGATGAGAAGTGCAATACAGCTCATTTCTACAAACTGGCCTTATTGGAATCGAACGGAAGGAGCTAATCACTTCTTTGTTGTTCCCCATGACTTTGGAGCCTGCTTTCATTACCAGGAAGAGAAAGCCATTAAACGGGGGATTCTTCCGTTACTCCAGCGTGCCACCTTAGTTCAGACGTTTGGACAACGGAACCACGTATGCTTGAAGGACGGTTCAATCACAATTCCTCCATATGCTCCACCACAGAAAATGCAGACGCACCTGATTCCCCAAGAAACTCCACGGTCCATCTTTGTCTACTTCCGTGGTCTATTTTATGACATTAATAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAAAATTTCAAGAACAATCCACTCTTTGATATCTCCACGGACCATCCAACTACATATTACGAAGACATGCAACGATCTATATTCTGTTTATGTCCTCTTGGTTGGGCCCCTTGGAGTCCAAGGCTAGTTGAAGCAGTGGTGTTTGGCTGCATCCCTGTTATTATAGCCGACGACATTGTTCTGCCCTTTGCTGATGCTATCCCATGGGAAGAAATCGGTGTTTTTGTTGCTGAGGAAGATGTCCCTAACCTGGACACAATCCTCACTTCTATTCCACCAGAAGTAATCTTAAGGAAACAAAGATTGCTGGCGAATCCTTCGATGAAATGGGCGATGATGTTCCCACAACCTGCACAACCAGGGGATGCTTTCCATCAGATACTAAACGGGCTAGCGCGAAAACTGCCCCATGATCAAAGTGTTTACATGAAGGATGATGAAAAGGTTCTGAATTGGACAGCAGGTCCAGTGGGAGACTTGAAACCTTGGTAA

Protein Analysis

414

Amino Acids

47.07

Weight (kDa)

6.27

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 46 - 341 6.4e-77 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27440
fragaria_vesca FvH4_4g22570
malus_domestica MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica Prupe.1G214300_v2.0.a1
pyrus_communis pycom13g11460 pycom16g11210
rosa_chinensis RchiOBHm_Chr4g0428811
rosa_laevigata RLG00000007123
rosa_multiflora Rmu_sc0009525.1_g000001
rosa_roxburghii Rroxscaffold_5G00370490
rosa_rugosa Rorug04G0229200
rosa_samantha Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana Rw4G024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1108, 1202
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 669
AccII CGCG 1 cut(s) 1147
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 173, 729
AfiI CCNNNNNNNGG 4 cut(s) 280, 504, 713, 1000
AflII CTTAAG 1 cut(s) 1039
AgsI TTSAA 7 cut(s) 142, 358, 577, 588, 760, 881, 1231
AhdI GACNNNNNGTC 1 cut(s) 1212
AjnI CCWGG 3 cut(s) 483, 999, 1108
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
AluBI AGCT 5 cut(s) 65, 160, 391, 434, 743
AluI AGCT 5 cut(s) 65, 160, 391, 434, 743
Alw26I GTCTC 2 cut(s) 212, 1218
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 407, 855
ApaI GGGCCC 1 cut(s) 859
ApeKI GCWGC 3 cut(s) 224, 740, 897
ApoI RAATTY 1 cut(s) 754
AseI ATTAAT 1 cut(s) 696
Asp700I GAANNNNTTC 1 cut(s) 1194
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 5 cut(s) 657, 790, 855, 856, 1214
AsuHPI GGTGA 3 cut(s) 119, 322, 354
AsuNHI GCTAGC 1 cut(s) 1141
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 3 cut(s) 657, 790, 1214
BaeGI GKGCMC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 819
BbvCI CCTCAGC 1 cut(s) 981
BbvI GCAGC 3 cut(s) 211, 752, 884
BccI CCATC 3 cut(s) 668, 801, 1131
BciT130I CCWGG 3 cut(s) 485, 1001, 1110
BclI TGATCA 2 cut(s) 67, 1162
BcoDI GTCTC 2 cut(s) 212, 1218
BfaI CTAG 3 cut(s) 165, 875, 1142
BfrI CTTAAG 1 cut(s) 1039
BfuAI ACCTGC 2 cut(s) 1108, 1202
BglII AGATCT 1 cut(s) 231
BisI GCNGC 3 cut(s) 225, 741, 898
BlsI GCNGC 3 cut(s) 226, 742, 899
Bme1390I CCNGG 3 cut(s) 485, 1001, 1110
Bme18I GGWCC 3 cut(s) 657, 790, 1214
BmeRI GACNNNNNGTC 1 cut(s) 1212
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 5 cut(s) 657, 790, 855, 856, 1214
BmiI GGNNCC 5 cut(s) 248, 469, 563, 857, 858
BmrFI CCNGG 3 cut(s) 485, 1001, 1110
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 4 cut(s) 250, 909, 934, 1105
BmtI GCTAGC 1 cut(s) 1145
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 568
BsaJI CCNNGG 9 cut(s) 365, 653, 676, 786, 860, 869, 953, 1109, 1235
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 504, 713, 1000
Bse1I ACTGG 5 cut(s) 128, 263, 343, 410, 1217
Bse3DI GCAATG 1 cut(s) 347
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 3 cut(s) 485, 1001, 1110
BseDI CCNNGG 9 cut(s) 365, 653, 676, 786, 860, 869, 953, 1109, 1235
BseGI GGATG 5 cut(s) 375, 793, 900, 1120, 1189
BseLI CCNNNNNNNGG 4 cut(s) 280, 504, 713, 1000
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 219, 972
BseNI ACTGG 5 cut(s) 128, 263, 343, 410, 1217
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 3 cut(s) 211, 752, 884
BsgI GTGCAG 1 cut(s) 1086
Bsh1236I CGCG 1 cut(s) 1147
BshFI GGCC 2 cut(s) 409, 857
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 4 cut(s) 280, 504, 713, 1000
BsmAI GTCTC 2 cut(s) 212, 1218
BsmFI GGGAC 1 cut(s) 977
BsnI GGCC 2 cut(s) 409, 857
BsoBI CYCGRG 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 5 cut(s) 5, 67, 231, 824, 1162
Bsp19I CCATGG 1 cut(s) 953
BspACI CCGC 1 cut(s) 88
BspANI GGCC 2 cut(s) 409, 857
BspCNI CTCAG 2 cut(s) 220, 973
BspEI TCCGGA 1 cut(s) 280
BspFNI CGCG 1 cut(s) 1147
BspLI GGNNCC 5 cut(s) 248, 469, 563, 857, 858
BspMI ACCTGC 2 cut(s) 1108, 1202
BspOI GCTAGC 1 cut(s) 1145
BspTI CTTAAG 1 cut(s) 1039
BsrBI CCGCTC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 5 cut(s) 128, 263, 343, 410, 1217
BssECI CCNNGG 9 cut(s) 365, 653, 676, 786, 860, 869, 953, 1109, 1235
BssMI GATC 5 cut(s) 5, 67, 231, 824, 1162
BssT1I CCWWGG 4 cut(s) 860, 869, 953, 1235
Bst2UI CCWGG 3 cut(s) 485, 1001, 1110
Bst4CI ACNGT 3 cut(s) 76, 584, 657
Bst6I CTCTTC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 1039
BstAPI GCANNNNNTGC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 5 cut(s) 344, 472, 531, 1059, 1143
BstDEI CTNAG 3 cut(s) 228, 538, 981
BstDSI CCRYGG 5 cut(s) 365, 653, 676, 786, 953
BstF5I GGATG 5 cut(s) 375, 793, 900, 1120, 1189
BstFNI CGCG 1 cut(s) 1147
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 5 cut(s) 8, 70, 234, 827, 1165
BstMAI GTCTC 2 cut(s) 212, 1218
BstMBI GATC 5 cut(s) 5, 67, 231, 824, 1162
BstMWI GCNNNNNNNGC 3 cut(s) 731, 740, 1153
BstNI CCWGG 3 cut(s) 485, 1001, 1110
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 3 cut(s) 483, 999, 1108
BstSLI GKGCMC 1 cut(s) 859
BstUI CGCG 1 cut(s) 1147
BstV1I GCAGC 3 cut(s) 211, 752, 884
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 409, 857
BtgI CCRYGG 5 cut(s) 365, 653, 676, 786, 953
BtgZI GCGATG 1 cut(s) 1097
BtsCI GGATG 5 cut(s) 375, 793, 900, 1120, 1189
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 336, 891, 1224
BveI ACCTGC 2 cut(s) 1108, 1202
Cac8I GCNNGC 5 cut(s) 344, 472, 531, 1059, 1143
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 5 cut(s) 657, 790, 855, 856, 1214
CseI GACGC 1 cut(s) 637
CviAII CATG 5 cut(s) 458, 817, 954, 1160, 1177
DdeI CTNAG 3 cut(s) 228, 538, 981
DpnI GATC 5 cut(s) 7, 69, 233, 826, 1164
DpnII GATC 5 cut(s) 5, 67, 231, 824, 1162
DriI GACNNNNNGTC 1 cut(s) 1212
Eam1104I CTCTTC 1 cut(s) 483
Eam1105I GACNNNNNGTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 4 cut(s) 860, 869, 953, 1235
Eco24I GRGCYC 1 cut(s) 859
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 3 cut(s) 657, 790, 1214
Eco57I CTGAAG 2 cut(s) 173, 729
Eco88I CYCGRG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 856
EcoRII CCWGG 3 cut(s) 483, 999, 1108
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 4 cut(s) 860, 869, 953, 1235
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 4 cut(s) 860, 869, 953, 1235
FaeI CATG 5 cut(s) 461, 820, 957, 1163, 1180
FaqI GGGAC 1 cut(s) 977
FatI CATG 5 cut(s) 457, 816, 953, 1159, 1176
FauNDI CATATG 2 cut(s) 216, 604
FbaI TGATCA 2 cut(s) 67, 1162
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 3 cut(s) 225, 741, 898
FokI GGATG 5 cut(s) 382, 780, 887, 1127, 1196
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 3 cut(s) 225, 741, 898
FspBI CTAG 3 cut(s) 165, 875, 1142
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 3 cut(s) 225, 741, 898
GsuI CTGGAG 1 cut(s) 509
HaeIII GGCC 2 cut(s) 409, 857
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 637
HhaI GCGC 1 cut(s) 1147
Hin1II CATG 5 cut(s) 461, 820, 957, 1163, 1180
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HinfI GANTC 5 cut(s) 418, 511, 637, 865, 1063
HpaII CCGG 1 cut(s) 281
HphI GGTGA 3 cut(s) 119, 322, 354
Hpy166II GTNNAC 2 cut(s) 670, 1174
Hpy188I TCNGA 5 cut(s) 72, 192, 546, 1128, 1200
Hpy188III TCNNGA 3 cut(s) 96, 281, 760
Hpy8I GTNNAC 2 cut(s) 670, 1174
Hpy99I CGWCG 1 cut(s) 923
HpyAV CCTTC 9 cut(s) 129, 136, 197, 364, 422, 571, 704, 1077, 1174
HpyCH4III ACNGT 3 cut(s) 76, 584, 657
HpyCH4IV ACGT 2 cut(s) 548, 567
HpyCH4V TGCA 8 cut(s) 241, 383, 625, 725, 734, 820, 900, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 731, 740, 1153
HpyF3I CTNAG 3 cut(s) 228, 538, 981
HpySE526I ACGT 2 cut(s) 548, 567
Hsp92II CATG 5 cut(s) 461, 820, 957, 1163, 1180
HspAI GCGC 1 cut(s) 1145
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 2 cut(s) 67, 1162
Kzo9I GATC 5 cut(s) 5, 67, 231, 824, 1162
LmnI GCTCC 4 cut(s) 62, 431, 467, 613
Lsp1109I GCAGC 3 cut(s) 211, 752, 884
LweI GCATC 4 cut(s) 250, 909, 934, 1105
MaeI CTAG 3 cut(s) 165, 875, 1142
MaeII ACGT 2 cut(s) 548, 567
MaeIII GTNAC 4 cut(s) 323, 360, 519, 716
MalI GATC 5 cut(s) 7, 69, 233, 826, 1164
MbiI CCGCTC 1 cut(s) 88
MboI GATC 5 cut(s) 5, 67, 231, 824, 1162
MboII GAAGA 5 cut(s) 500, 506, 824, 971, 998
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 3 cut(s) 594, 754, 1201
MlyI GAGTC 1 cut(s) 874
MmeI TCCRAC 3 cut(s) 40, 112, 821
MnlI CCTC 9 cut(s) 112, 260, 277, 338, 609, 722, 855, 976, 1022
Mph1103I ATGCAT 1 cut(s) 243
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 3 cut(s) 501, 696, 1040
MspA1I CMGCKG 1 cut(s) 743
MspCI CTTAAG 1 cut(s) 1039
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 485, 1001, 1110
MvaI CCWGG 3 cut(s) 485, 1001, 1110
MvnI CGCG 1 cut(s) 1147
MwoI GCNNNNNNNGC 3 cut(s) 731, 740, 1153
NcoI CCATGG 1 cut(s) 953
NdeI CATATG 2 cut(s) 216, 604
NdeII GATC 5 cut(s) 5, 67, 231, 824, 1162
NheI GCTAGC 1 cut(s) 1141
NlaIII CATG 5 cut(s) 461, 820, 957, 1163, 1180
NlaIV GGNNCC 5 cut(s) 248, 469, 563, 857, 858
NmuCI GTSAC 2 cut(s) 323, 360
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 4 cut(s) 418, 511, 637, 1063
PkrI GCNGC 3 cut(s) 226, 742, 899
PleI GAGTC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 873
Ppu21I YACGTR 1 cut(s) 568
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 483, 999, 1108
PspGI CCWGG 3 cut(s) 483, 999, 1108
PspN4I GGNNCC 5 cut(s) 248, 469, 563, 857, 858
PspOMI GGGCCC 1 cut(s) 855
PspPI GGNCC 5 cut(s) 657, 790, 855, 856, 1214
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 743
SaqAI TTAA 3 cut(s) 501, 696, 1040
SatI GCNGC 3 cut(s) 225, 741, 898
Sau3AI GATC 5 cut(s) 5, 67, 231, 824, 1162
Sau96I GGNCC 5 cut(s) 657, 790, 855, 856, 1214
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 3 cut(s) 485, 1001, 1110
SduI GDGCHC 1 cut(s) 859
SfaNI GCATC 4 cut(s) 250, 909, 934, 1105
SinI GGWCC 3 cut(s) 657, 790, 1214
SmlI CTYRAG 1 cut(s) 1039
SmoI CTYRAG 1 cut(s) 1039
Sse9I AATT 3 cut(s) 594, 754, 1201
SsiI CCGC 1 cut(s) 88
SspMI CTAG 3 cut(s) 165, 875, 1142
StyD4I CCNGG 3 cut(s) 483, 999, 1108
StyI CCWWGG 4 cut(s) 860, 869, 953, 1235
TaaI ACNGT 3 cut(s) 76, 584, 657
TaiI ACGT 2 cut(s) 551, 570
TaqI TCGA 2 cut(s) 421, 1070
TasI AATT 3 cut(s) 594, 754, 1201
TfiI GAWTC 4 cut(s) 418, 511, 637, 1063
Tru1I TTAA 3 cut(s) 501, 696, 1040
Tru9I TTAA 3 cut(s) 501, 696, 1040
TscAI CASTG 3 cut(s) 343, 891, 1224
TseFI GTSAC 2 cut(s) 323, 360
TseI GCWGC 3 cut(s) 224, 740, 897
Tsp45I GTSAC 2 cut(s) 323, 360
TspDTI ATGAA 4 cut(s) 467, 1088, 1193, 1203
TspGWI ACGGA 6 cut(s) 382, 440, 507, 574, 665, 803
TspRI CASTG 3 cut(s) 343, 891, 1224
Vha464I CTTAAG 1 cut(s) 1039
VpaK11BI GGWCC 3 cut(s) 657, 790, 1214
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 754
XceI RCATGY 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 3 cut(s) 165, 875, 1142
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.