Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013974

Physical Location & Seq

Genomic Coordinates Forward (+)

7784011 .. 7785224

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATGAGAAGTGCAATACAGCTCATTTCTACAAACTGGCCTTATTGGAATCGAACGGAAGGAGCTAATCACTTCTTTGTTGTTCCCCATGACTTTGGAGCCTGCTTTCATTACCAGGAAGAGAAAGCCATTGAACGGGGGATTCTTCCGTTACTCCAGCGTGCCACCTTAGTTCAGACGTTTGGACAACGGAACCACGTATGCTTGAAGGACGGTTCAATCACAATTCCTCCATATGCTCCACCACAGAAAATGCAGACGCACTTGATTCCCCAAGAAACTCCACGGTCCATCTTTGTCTACTTCCGTGGTCTATTTTATGACATTAATAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAAAATTTCAAGAACAATCCACTCTTTGATATCTCCACGGACCATCCAACTACATATTACGAAGACATGCAACGATCTATATTCTGTTTATGTCCTCTTGGTTGGGCCCCTTGGAGTCCAATGCTAGTTGAAGCAGTGGTGTTTGGCTGCATCCCTGTTATTATAGCCGACGACATTGTTCTGCCCTTTGCTGATGCTATCCCATGGGAAGAAATCGGTGTTTTTGTTGCTGAGGAAGATGTCCCTAACCTGGACACAATCCTCACTTCTATTCCACCAGAAGTAATCTTAAGGAAACAAAGATTGCTGGCGAATCCTTCGATGAAATGGGCGATGATGTTCCCACAACCTGCACAACCAGGGGATGCTTTCCATCAGATACTAAACGGGCTGGCACGCAAACTGCCCCACGATCAAAGTGTTTACATGAAAGATGATGAAAAGGTTCTGAATTGGACAGCAGGTCCAGTGGGAGACTTGAAACCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

291

Amino Acids

33.1

Weight (kDa)

5.35

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27440
fragaria_vesca	FvH4_4g22570
malus_domestica	MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica	Prupe.1G214300_v2.0.a1
pyrus_communis	pycom13g11460 pycom16g11210
rosa_chinensis	RchiOBHm_Chr4g0428811
rosa_laevigata	RLG00000007123
rosa_multiflora	Rmu_sc0009525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370490
rosa_rugosa	Rorug04G0229200
rosa_samantha	Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana	Rw4G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	739, 833
AccI	GTMKAC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	135, 344, 631
AflII	CTTAAG	1 cut(s)	670
AgsI	TTSAA	6 cut(s)	134, 208, 219, 391, 512, 862
AhdI	GACNNNNNGTC	1 cut(s)	843
AjnI	CCWGG	3 cut(s)	114, 630, 739
AluBI	AGCT	3 cut(s)	22, 65, 374
AluI	AGCT	3 cut(s)	22, 65, 374
Alw26I	GTCTC	1 cut(s)	849
AoxI	GGCC	2 cut(s)	38, 486
ApaI	GGGCCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	371, 528
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	825
AspS9I	GGNCC	5 cut(s)	288, 421, 486, 487, 845
AvaII	GGWCC	3 cut(s)	288, 421, 845
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	383, 515
BccI	CCATC	3 cut(s)	299, 432, 762
BciT130I	CCWGG	3 cut(s)	116, 632, 741
BcoDI	GTCTC	1 cut(s)	849
BfaI	CTAG	1 cut(s)	506
BfrI	CTTAAG	1 cut(s)	670
BfuAI	ACCTGC	2 cut(s)	739, 833
BisI	GCNGC	2 cut(s)	372, 529
BlsI	GCNGC	2 cut(s)	373, 530
Bme1390I	CCNGG	3 cut(s)	116, 632, 741
Bme18I	GGWCC	3 cut(s)	288, 421, 845
BmeRI	GACNNNNNGTC	1 cut(s)	843
BmgT120I	GGNCC	5 cut(s)	288, 421, 486, 487, 845
BmiI	GGNNCC	4 cut(s)	100, 194, 488, 489
BmrFI	CCNGG	3 cut(s)	116, 632, 741
BmsI	GCATC	3 cut(s)	540, 565, 736
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	7 cut(s)	284, 307, 417, 491, 584, 740, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 344, 631
Bse1I	ACTGG	2 cut(s)	41, 848
BseBI	CCWGG	3 cut(s)	116, 632, 741
BseDI	CCNNGG	7 cut(s)	284, 307, 417, 491, 584, 740, 866
BseGI	GGATG	3 cut(s)	424, 531, 751
BseLI	CCNNNNNNNGG	3 cut(s)	135, 344, 631
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	41, 848
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	383, 515
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	40, 488
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	135, 344, 631
BsmAI	GTCTC	1 cut(s)	849
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	40, 488
Bsp120I	GGGCCC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	455, 793
Bsp19I	CCATGG	1 cut(s)	584
BspANI	GGCC	2 cut(s)	40, 488
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	4 cut(s)	100, 194, 488, 489
BspMI	ACCTGC	2 cut(s)	739, 833
BspTI	CTTAAG	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	41, 848
BssECI	CCNNGG	7 cut(s)	284, 307, 417, 491, 584, 740, 866
BssMI	GATC	2 cut(s)	455, 793
BssT1I	CCWWGG	3 cut(s)	491, 584, 866
Bst2UI	CCWGG	3 cut(s)	116, 632, 741
Bst4CI	ACNGT	2 cut(s)	215, 288
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	670
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	5 cut(s)	103, 162, 690, 774, 778
BstDEI	CTNAG	2 cut(s)	169, 612
BstDSI	CCRYGG	4 cut(s)	284, 307, 417, 584
BstF5I	GGATG	3 cut(s)	424, 531, 751
BstKTI	GATC	2 cut(s)	458, 796
BstMAI	GTCTC	1 cut(s)	849
BstMBI	GATC	2 cut(s)	455, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 371
BstNI	CCWGG	3 cut(s)	116, 632, 741
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	3 cut(s)	114, 630, 739
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	383, 515
BstV2I	GAAGAC	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	40, 488
BtgI	CCRYGG	4 cut(s)	284, 307, 417, 584
BtgZI	GCGATG	1 cut(s)	728
BtsCI	GGATG	3 cut(s)	424, 531, 751
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 855
BveI	ACCTGC	2 cut(s)	739, 833
Cac8I	GCNNGC	5 cut(s)	103, 162, 690, 774, 778
Cfr13I	GGNCC	5 cut(s)	288, 421, 486, 487, 845
CseI	GACGC	1 cut(s)	268
CviAII	CATG	4 cut(s)	89, 448, 585, 808
DdeI	CTNAG	2 cut(s)	169, 612
DpnI	GATC	2 cut(s)	457, 795
DpnII	GATC	2 cut(s)	455, 793
DriI	GACNNNNNGTC	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	3 cut(s)	491, 584, 866
Eco24I	GRGCYC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	288, 421, 845
Eco57I	CTGAAG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	3 cut(s)	114, 630, 739
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	3 cut(s)	491, 584, 866
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	3 cut(s)	491, 584, 866
FaeI	CATG	4 cut(s)	92, 451, 588, 811
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	4 cut(s)	88, 447, 584, 807
FauNDI	CATATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	372, 529
FokI	GGATG	3 cut(s)	411, 518, 758
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	2 cut(s)	372, 529
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	372, 529
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	40, 488
HgaI	GACGC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	92, 451, 588, 811
HinfI	GANTC	5 cut(s)	49, 142, 268, 496, 694
Hpy166II	GTNNAC	2 cut(s)	301, 805
Hpy188I	TCNGA	3 cut(s)	177, 759, 831
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	2 cut(s)	301, 805
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	53, 202, 335, 708
HpyCH4III	ACNGT	2 cut(s)	215, 288
HpyCH4IV	ACGT	2 cut(s)	179, 198
HpyCH4V	TGCA	7 cut(s)	14, 256, 356, 365, 451, 531, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 371
HpyF3I	CTNAG	2 cut(s)	169, 612
HpySE526I	ACGT	2 cut(s)	179, 198
Hsp92II	CATG	4 cut(s)	92, 451, 588, 811
Kzo9I	GATC	2 cut(s)	455, 793
LmnI	GCTCC	3 cut(s)	62, 98, 244
Lsp1109I	GCAGC	2 cut(s)	383, 515
LweI	GCATC	3 cut(s)	540, 565, 736
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	179, 198
MaeIII	GTNAC	2 cut(s)	150, 347
MalI	GATC	2 cut(s)	457, 795
MboI	GATC	2 cut(s)	455, 793
MboII	GAAGA	5 cut(s)	131, 137, 455, 602, 629
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	3 cut(s)	225, 385, 832
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	5 cut(s)	240, 353, 486, 607, 653
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	2 cut(s)	327, 671
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	670
MspR9I	CCNGG	3 cut(s)	116, 632, 741
MvaI	CCWGG	3 cut(s)	116, 632, 741
MwoI	GCNNNNNNNGC	2 cut(s)	362, 371
NcoI	CCATGG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	455, 793
NlaIII	CATG	4 cut(s)	92, 451, 588, 811
NlaIV	GGNNCC	4 cut(s)	100, 194, 488, 489
NspI	RCATGY	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	4 cut(s)	49, 142, 268, 694
PkrI	GCNGC	2 cut(s)	373, 530
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
Ppu21I	YACGTR	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	114, 630, 739
PspGI	CCWGG	3 cut(s)	114, 630, 739
PspN4I	GGNNCC	4 cut(s)	100, 194, 488, 489
PspOMI	GGGCCC	1 cut(s)	486
PspPI	GGNCC	5 cut(s)	288, 421, 486, 487, 845
PvuII	CAGCTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	327, 671
SatI	GCNGC	2 cut(s)	372, 529
Sau3AI	GATC	2 cut(s)	455, 793
Sau96I	GGNCC	5 cut(s)	288, 421, 486, 487, 845
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	116, 632, 741
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	3 cut(s)	540, 565, 736
SinI	GGWCC	3 cut(s)	288, 421, 845
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	3 cut(s)	225, 385, 832
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	3 cut(s)	114, 630, 739
StyI	CCWWGG	3 cut(s)	491, 584, 866
TaaI	ACNGT	2 cut(s)	215, 288
TaiI	ACGT	2 cut(s)	182, 201
TaqI	TCGA	2 cut(s)	52, 701
TasI	AATT	3 cut(s)	225, 385, 832
TfiI	GAWTC	4 cut(s)	49, 142, 268, 694
Tru1I	TTAA	2 cut(s)	327, 671
Tru9I	TTAA	2 cut(s)	327, 671
TscAI	CASTG	2 cut(s)	522, 855
TseI	GCWGC	2 cut(s)	371, 528
TspDTI	ATGAA	4 cut(s)	98, 719, 824, 834
TspGWI	ACGGA	5 cut(s)	71, 138, 205, 296, 434
TspRI	CASTG	2 cut(s)	522, 855
Vha464I	CTTAAG	1 cut(s)	670
VpaK11BI	GGWCC	3 cut(s)	288, 421, 845
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.