Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013974

Physical Location & Seq

Genomic Coordinates Reverse (-)

46417312 .. 46420905

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG291900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTTTGATGTATATGTTTTGTACATTAATGCAGGAAGTGCTGGTGATGTGTTAGAGGATAATCCAGTTGGGAGGTTGAAAGTTTATGTGTATGAGCTGCCTAGCAAATACAACAAGAAACTCCTTCAAAAAGAGCCAAGATGTCTCAACCATATGTTTGCTGCTGAGATCTTTATGCATAGGTTCCTCTTATCAAGCGCGGTTAGAACCCACAATCCGAACGAAGCAGATTGGTTCTATACTCCTATATACACAACTTGTGACCTTACCCCTACTGGCTTGCCATTGCCCTTCAAATCACCACGGATGATGAGAAGTGCAGTGCAGCTCATATCTAGGAACTGGCCTTATTGGAATCGAACAGAGGGAGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCCTGCTTCCATTACCAGGAAGAGAAAGCTATTGACAGGGGGATTCTTCCATTACTTCAGCGTGCAACATTGGTTCAAACCTTTGGACAGCGGAACCATGTATGTTTGAAAGAGGGTTCGATCACAATTCCTCCCTATGCTCCACCGCAAAAGATGCAGACCCACCTGATTCCCCAGGAAACTCCAAGGTCCATCTTTGTCTACTTTCGTGGCCTGTTTTATGACATTAATAATGATCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAGAACTTCAAGAACAACCCTCTCTTCGACATCTCAACTGACCACCCAACAACATATTATGAAGACATGCAACGATCGATATTCTGTTTATGCCCTCTTGGATGGGCTCCATGGAGTCCGAGGCTAGTTGAAGCTGTGGTATTCGGTTGCATTCCTGTTATTATAGCCGATGACATTGTGTTACCCTTTGCTGATGCCATCCCATGGGAAGAAATCGGAGTATTTGTAGCCGAGGAGGATGTCCCTAACTTGGATACAATTCTCACTTCTATTCCACCAGAAGTGATTTTAAGGAAACAAAGATTGCTTGCAAATCCTTCGATGAAATGGGCCATGATGTTCCCACAGCCGGCACAACCAGGGGATGCTTTCCACCAGATACTTAACGGGCTGGCTCGGAAACTACCCCATGCCAAGAGTGTTTACTTAAAGGCTGATCAAAAGATTTTGAACTGGACAGCAGGTCCAGTGGGAGACTTGAAACCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

392

Amino Acids

44.84

Weight (kDa)

6.42

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	25 - 320	1.4e-78	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27440
fragaria_vesca	FvH4_4g22570
malus_domestica	MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica	Prupe.1G214300_v2.0.a1
pyrus_communis	pycom13g11460 pycom16g11210
rosa_chinensis	RchiOBHm_Chr4g0428811
rosa_laevigata	RLG00000007123
rosa_multiflora	Rmu_sc0009525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370490
rosa_rugosa	Rorug04G0229200
rosa_samantha	Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana	Rw4G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1139
AccB7I	CCANNNNNTGG	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	200, 496, 551
AclWI	GGATC	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	446, 666
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	5 cut(s)	421, 650, 891, 937, 1036
AgsI	TTSAA	9 cut(s)	79, 128, 295, 482, 514, 697, 818, 1138, 1168
AhdI	GACNNNNNGTC	1 cut(s)	1149
AjnI	CCWGG	3 cut(s)	420, 579, 1045
AloI	GAACNNNNNNTCC	2 cut(s)	199, 231
AluBI	AGCT	6 cut(s)	97, 328, 371, 434, 680, 821
AluI	AGCT	6 cut(s)	97, 328, 371, 434, 680, 821
Alw26I	GTCTC	2 cut(s)	149, 1155
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	3 cut(s)	344, 616, 1017
ApeKI	GCWGC	4 cut(s)	97, 161, 325, 677
AseI	ATTAAT	2 cut(s)	27, 633
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	594, 1017, 1151
AsuHPI	GGTGA	2 cut(s)	56, 291
AvaII	GGWCC	2 cut(s)	594, 1151
BaeGI	GKGCMC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	4 cut(s)	84, 148, 337, 689
BccI	CCATC	3 cut(s)	605, 783, 893
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BciT130I	CCWGG	3 cut(s)	422, 581, 1047
BciVI	GTATCC	1 cut(s)	934
BclI	TGATCA	2 cut(s)	373, 1123
BcoDI	GTCTC	2 cut(s)	149, 1155
BfaI	CTAG	3 cut(s)	102, 336, 812
BfuAI	ACCTGC	1 cut(s)	1139
BfuI	GTATCC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	4 cut(s)	98, 162, 326, 678
BlsI	GCNGC	4 cut(s)	99, 163, 327, 679
Bme1390I	CCNGG	3 cut(s)	422, 581, 1047
Bme18I	GGWCC	2 cut(s)	594, 1151
BmeRI	GACNNNNNGTC	1 cut(s)	1149
BmgT120I	GGNCC	3 cut(s)	594, 1017, 1151
BmiI	GGNNCC	4 cut(s)	185, 406, 500, 795
BmrFI	CCNGG	3 cut(s)	422, 581, 1047
BmsI	GCATC	3 cut(s)	549, 871, 1042
BpiI	GAAGAC	1 cut(s)	756
Bsa29I	ATCGAT	1 cut(s)	764
BsaJI	CCNNGG	9 cut(s)	302, 579, 590, 797, 806, 890, 918, 1046, 1172
BsaXI	ACNNNNNCTCC	4 cut(s)	520, 550, 897, 927
Bsc4I	CCNNNNNNNGG	5 cut(s)	421, 650, 891, 937, 1036
Bse118I	RCCGGY	1 cut(s)	1036
Bse1I	ACTGG	5 cut(s)	65, 280, 347, 1145, 1154
Bse3DI	GCAATG	1 cut(s)	284
BseBI	CCWGG	3 cut(s)	422, 581, 1047
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	9 cut(s)	302, 579, 590, 797, 806, 890, 918, 1046, 1172
BseGI	GGATG	5 cut(s)	312, 794, 885, 931, 1057
BseLI	CCNNNNNNNGG	5 cut(s)	421, 650, 891, 937, 1036
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	5 cut(s)	65, 280, 347, 1145, 1154
BseRI	GAGGAG	1 cut(s)	935
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	84, 148, 337, 689
BsgI	GTGCAG	2 cut(s)	339, 344
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	764
BshFI	GGCC	3 cut(s)	346, 618, 1019
BshVI	ATCGAT	1 cut(s)	764
BsiEI	CGRYCG	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	1037
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	5 cut(s)	421, 650, 891, 937, 1036
BsmAI	GTCTC	2 cut(s)	149, 1155
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	3 cut(s)	346, 618, 1019
Bsp1286I	GDGCHC	2 cut(s)	393, 796
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
Bsp19I	CCATGG	2 cut(s)	797, 890
BspACI	CCGC	3 cut(s)	200, 496, 551
BspANI	GGCC	3 cut(s)	346, 618, 1019
BspCNI	CTCAG	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	764
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	185, 406, 500, 795
BspMI	ACCTGC	1 cut(s)	1139
BspPI	GGATC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	1036
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	5 cut(s)	65, 280, 347, 1145, 1154
BssAI	RCCGGY	1 cut(s)	1036
BssECI	CCNNGG	9 cut(s)	302, 579, 590, 797, 806, 890, 918, 1046, 1172
BssMI	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
BssT1I	CCWWGG	4 cut(s)	590, 797, 890, 1172
Bst2UI	CCWGG	3 cut(s)	422, 581, 1047
Bst6I	CTCTTC	2 cut(s)	420, 716
BstAPI	GCANNNNNTGC	3 cut(s)	38, 559, 668
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	6 cut(s)	281, 409, 468, 996, 1038, 1080
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	3 cut(s)	302, 797, 890
BstF5I	GGATG	5 cut(s)	312, 794, 885, 931, 1057
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	6 cut(s)	171, 376, 528, 643, 764, 1126
BstMAI	GTCTC	2 cut(s)	149, 1155
BstMBI	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
BstMCI	CGRYCG	1 cut(s)	764
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 559, 668, 677
BstNI	CCWGG	3 cut(s)	422, 581, 1047
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	420, 579, 1045
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	4 cut(s)	84, 148, 337, 689
BstV2I	GAAGAC	1 cut(s)	756
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	764
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	3 cut(s)	346, 618, 1019
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	3 cut(s)	302, 797, 890
BtsCI	GGATG	5 cut(s)	312, 794, 885, 931, 1057
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 1161
BveI	ACCTGC	1 cut(s)	1139
Cac8I	GCNNGC	6 cut(s)	281, 409, 468, 996, 1038, 1080
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	1036
Cfr13I	GGNCC	3 cut(s)	594, 1017, 1151
ClaI	ATCGAT	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	7 cut(s)	395, 503, 754, 798, 891, 1021, 1097
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	6 cut(s)	170, 375, 527, 642, 763, 1125
DpnII	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
DriI	GACNNNNNGTC	1 cut(s)	1149
Eam1104I	CTCTTC	2 cut(s)	420, 716
Eam1105I	GACNNNNNGTC	1 cut(s)	1149
EarI	CTCTTC	2 cut(s)	420, 716
Eco130I	CCWWGG	4 cut(s)	590, 797, 890, 1172
Eco24I	GRGCYC	1 cut(s)	796
Eco47I	GGWCC	2 cut(s)	594, 1151
Eco57I	CTGAAG	2 cut(s)	446, 666
EcoRII	CCWGG	3 cut(s)	420, 579, 1045
EcoT14I	CCWWGG	4 cut(s)	590, 797, 890, 1172
EcoT22I	ATGCAT	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	796
ErhI	CCWWGG	4 cut(s)	590, 797, 890, 1172
FaeI	CATG	7 cut(s)	398, 506, 757, 801, 894, 1024, 1100
FaqI	GGGAC	1 cut(s)	914
FatI	CATG	7 cut(s)	394, 502, 753, 797, 890, 1020, 1096
FauNDI	CATATG	1 cut(s)	153
FbaI	TGATCA	2 cut(s)	373, 1123
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	98, 162, 326, 678
FokI	GGATG	5 cut(s)	319, 801, 872, 938, 1064
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	4 cut(s)	98, 162, 326, 678
FspBI	CTAG	3 cut(s)	102, 336, 812
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	4 cut(s)	98, 162, 326, 678
HaeIII	GGCC	3 cut(s)	346, 618, 1019
HapII	CCGG	1 cut(s)	1037
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	7 cut(s)	398, 506, 757, 801, 894, 1024, 1100
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	4 cut(s)	355, 448, 574, 802
HpaII	CCGG	1 cut(s)	1037
HphI	GGTGA	2 cut(s)	56, 291
Hpy166II	GTNNAC	2 cut(s)	607, 1111
Hpy188I	TCNGA	4 cut(s)	219, 807, 905, 1086
Hpy188III	TCNNGA	2 cut(s)	644, 697
Hpy8I	GTNNAC	2 cut(s)	607, 1111
HpyAV	CCTTC	4 cut(s)	134, 301, 641, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 559, 668, 677
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	398, 506, 757, 801, 894, 1024, 1100
HspAI	GCGC	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	1036
KroNI	GCCGGC	1 cut(s)	1038
Ksp22I	TGATCA	2 cut(s)	373, 1123
Kzo9I	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
LmnI	GCTCC	4 cut(s)	368, 404, 550, 799
Lsp1109I	GCAGC	4 cut(s)	84, 148, 337, 689
LweI	GCATC	3 cut(s)	549, 871, 1042
MaeI	CTAG	3 cut(s)	102, 336, 812
MaeIII	GTNAC	3 cut(s)	260, 653, 867
MalI	GATC	6 cut(s)	170, 375, 527, 642, 763, 1125
MboI	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
MboII	GAAGA	5 cut(s)	437, 443, 703, 761, 908
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	393, 796
MluCI	AATT	2 cut(s)	531, 945
MlyI	GAGTC	1 cut(s)	811
Mph1103I	ATGCAT	1 cut(s)	180
MroNI	GCCGGC	1 cut(s)	1036
MseI	TTAA	5 cut(s)	27, 633, 977, 1071, 1115
MspA1I	CMGCKG	2 cut(s)	496, 680
MspI	CCGG	1 cut(s)	1037
MspR9I	CCNGG	3 cut(s)	422, 581, 1047
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	3 cut(s)	422, 581, 1047
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	38, 559, 668, 677
NaeI	GCCGGC	1 cut(s)	1038
NcoI	CCATGG	2 cut(s)	797, 890
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
NgoMIV	GCCGGC	1 cut(s)	1036
NlaIII	CATG	7 cut(s)	398, 506, 757, 801, 894, 1024, 1100
NlaIV	GGNNCC	4 cut(s)	185, 406, 500, 795
NmeAIII	GCCGAG	1 cut(s)	943
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	180
NspI	RCATGY	1 cut(s)	757
PctI	GAATGC	1 cut(s)	837
PdiI	GCCGGC	1 cut(s)	1038
PfeI	GAWTC	3 cut(s)	355, 448, 574
PflMI	CCANNNNNTGG	1 cut(s)	891
PkrI	GCNGC	4 cut(s)	99, 163, 327, 679
Ple19I	CGATCG	1 cut(s)	764
PleI	GAGTC	1 cut(s)	810
PpsI	GAGTC	1 cut(s)	810
PshBI	ATTAAT	2 cut(s)	27, 633
Psp6I	CCWGG	3 cut(s)	420, 579, 1045
PspGI	CCWGG	3 cut(s)	420, 579, 1045
PspN4I	GGNNCC	4 cut(s)	185, 406, 500, 795
PspPI	GGNCC	3 cut(s)	594, 1017, 1151
PsuI	RGATCY	1 cut(s)	168
PvuI	CGATCG	1 cut(s)	764
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	5 cut(s)	27, 633, 977, 1071, 1115
SatI	GCNGC	4 cut(s)	98, 162, 326, 678
Sau3AI	GATC	6 cut(s)	168, 373, 525, 640, 761, 1123
Sau96I	GGNCC	3 cut(s)	594, 1017, 1151
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	3 cut(s)	422, 581, 1047
SduI	GDGCHC	2 cut(s)	393, 796
SfaNI	GCATC	3 cut(s)	549, 871, 1042
SinI	GGWCC	2 cut(s)	594, 1151
Sse9I	AATT	2 cut(s)	531, 945
SsiI	CCGC	3 cut(s)	200, 496, 551
SspMI	CTAG	3 cut(s)	102, 336, 812
StyD4I	CCNGG	3 cut(s)	420, 579, 1045
StyI	CCWWGG	4 cut(s)	590, 797, 890, 1172
TaqI	TCGA	5 cut(s)	358, 524, 714, 764, 1007
TasI	AATT	2 cut(s)	531, 945
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	355, 448, 574
Tru1I	TTAA	5 cut(s)	27, 633, 977, 1071, 1115
Tru9I	TTAA	5 cut(s)	27, 633, 977, 1071, 1115
TscAI	CASTG	2 cut(s)	327, 1161
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	4 cut(s)	97, 161, 325, 677
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	762, 1025
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	2 cut(s)	327, 1161
Van91I	CCANNNNNTGG	1 cut(s)	891
VpaK11BI	GGWCC	2 cut(s)	594, 1151
VspI	ATTAAT	2 cut(s)	27, 633
XceI	RCATGY	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	3 cut(s)	102, 336, 812
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.