FvH4_4g22570

beta-1,4-xylosyltransferase IRX10

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013974
Physical Location & Seq
Reverse (-)
25341993 .. 25345175
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22570.t1

Sequence Viewer

Length: 1242 bp
ATGAGAATGGGAATGTTGGTTCTTGCTCTTCTTTGTGTTTATGGGTTTGCTTGGGGAGTTGGTGCTGATAAGAATGTAAGAACTGAGCGCATTTCAGGAAGTGCTGGTGATGTGTTAGAGGATAATCCAGTTGGGAGGTTGAAAGTTTATGTGTATGAGCTGCCTAGCAAATACAACAAGAAACTCCTTCAAAAAGAACCAAGATGTCTCAACCATATGTTTGCAGCCGAGATCTTTATGCATAGGTTTCTCTTATCCAGCGCGGTTAGAACCCACAATCCGAATGAAGCAGATTGGTTCTATACTCCTATATACACAACTTGTGATCTTACCCCTACTGGCTTGCCATTGCCCTTCAAATCTCCACGGATGATGAGAAGTGCAGTGCAGCTCATATCTAGGAACTGGCCTTATTGGAACAGAACAGAGGGAGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCCTGCTTTCATTACCAGGAGGAGAAAGCTATTGACAGGGGGATTCTTCCATTACTTCAGCGTGCAACATTGGTTCAAACCTTCGGACAGCAAAACCATGTATGTTTGAAAGAGGGTTCGATCACAATTCCTCCATATGCTCCACCGCAAAAGATGCAGACCCACCTGATTCCCCAGGAAACTCCGAGGTCCATCTTTGTCTACTTCCGCGGCCTGTTTTATGACATTAATAATGATCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAGAATTTTAAGAGCAACCCTCTCTTTGACATCTCAACTGACCACCCTACAACATATTATGAAGACATGCAACGATCTATATTCTGTTTATGCCCTCTCGGATGGGCTCCATGGAGTCCGAGGCTAGTTGAAGCAGTGGTATTTGGTTGCATTCCTGTTATTATAGCTGATGACATTGTGTTACCCTTTGCTGATGCCATACCATGGGAAGAAATCGGAGTTTTTGTAGCCGAGGAAGATGTGCCTAACTTAGATACTATTCTCACTTCTATTCCACCAGAAGTGATCTTAAGGAAACAAAGGTTGCTTGCAAATCCTTCAATGAAATGGGCCATGATGTTCCCACAACCACCACAACCAGGAGATGCTTTCCACCAAATACTTAACGGGCTGGCTCGAAAACTCCCCCATGCCAAGAATGTTTACTTAAAAGCTGATCAAAAGGTTTTGAATTGGACAGCAGGTCCAGTGGGAGACTTGAAACCTTGGTAA

Protein Analysis

414

Amino Acids

47.04

Weight (kDa)

6.83

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 46 - 341 2e-78 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27440
fragaria_vesca FvH4_4g22570
malus_domestica MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica Prupe.1G214300_v2.0.a1
pyrus_communis pycom13g11460 pycom16g11210
rosa_chinensis RchiOBHm_Chr4g0428811
rosa_laevigata RLG00000007123
rosa_multiflora Rmu_sc0009525.1_g000001
rosa_roxburghii Rroxscaffold_5G00370490
rosa_rugosa Rorug04G0229200
rosa_samantha Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana Rw4G024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1202
AccB7I CCANNNNNTGG 1 cut(s) 954
AccI GTMKAC 1 cut(s) 669
AccII CGCG 2 cut(s) 263, 678
AciI CCGC 4 cut(s) 263, 614, 676, 678
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 509, 729
AfiI CCNNNNNNNGG 3 cut(s) 713, 954, 1109
AflII CTTAAG 1 cut(s) 1039
AgsI TTSAA 9 cut(s) 142, 191, 358, 545, 577, 881, 1071, 1201, 1231
AhdI GACNNNNNGTC 1 cut(s) 1212
AjnI CCWGG 3 cut(s) 483, 642, 1108
AloI GAACNNNNNNTCC 3 cut(s) 35, 262, 294
AluBI AGCT 7 cut(s) 160, 391, 434, 497, 743, 917, 1184
AluI AGCT 7 cut(s) 160, 391, 434, 497, 743, 917, 1184
Alw26I GTCTC 2 cut(s) 212, 1218
AlwI GGATC 1 cut(s) 698
AoxI GGCC 3 cut(s) 407, 679, 1080
ApeKI GCWGC 4 cut(s) 160, 224, 388, 740
ApoI RAATTY 1 cut(s) 754
AseI ATTAAT 1 cut(s) 696
AspLEI GCGC 2 cut(s) 90, 263
AspS9I GGNCC 3 cut(s) 657, 1080, 1214
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 657, 1214
BaeGI GKGCMC 1 cut(s) 456
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 1 cut(s) 819
BbvI GCAGC 4 cut(s) 147, 236, 400, 752
BccI CCATC 2 cut(s) 668, 846
BciT130I CCWGG 3 cut(s) 485, 644, 1110
BclI TGATCA 2 cut(s) 436, 1186
BcoDI GTCTC 2 cut(s) 212, 1218
BfaI CTAG 3 cut(s) 165, 399, 875
BfrI CTTAAG 1 cut(s) 1039
BfuAI ACCTGC 1 cut(s) 1202
BglII AGATCT 1 cut(s) 231
BisI GCNGC 5 cut(s) 161, 225, 389, 679, 741
BlsI GCNGC 5 cut(s) 162, 226, 390, 680, 742
Bme1390I CCNGG 3 cut(s) 485, 644, 1110
Bme18I GGWCC 2 cut(s) 657, 1214
BmeRI GACNNNNNGTC 1 cut(s) 1212
BmgT120I GGNCC 3 cut(s) 657, 1080, 1214
BmiI GGNNCC 2 cut(s) 469, 858
BmrFI CCNGG 3 cut(s) 485, 644, 1110
BmsI GCATC 3 cut(s) 612, 934, 1105
BpiI GAAGAC 1 cut(s) 819
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BsaJI CCNNGG 9 cut(s) 365, 642, 653, 676, 860, 869, 953, 981, 1235
BsaXI ACNNNNNCTCC 4 cut(s) 583, 613, 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 954, 1109
Bse1I ACTGG 4 cut(s) 128, 343, 410, 1217
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 3 cut(s) 485, 644, 1110
BseDI CCNNGG 9 cut(s) 365, 642, 653, 676, 860, 869, 953, 981, 1235
BseGI GGATG 2 cut(s) 375, 857
BseLI CCNNNNNNNGG 3 cut(s) 713, 954, 1109
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 4 cut(s) 128, 343, 410, 1217
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 4 cut(s) 147, 236, 400, 752
BsgI GTGCAG 2 cut(s) 402, 407
Bsh1236I CGCG 2 cut(s) 263, 678
BshFI GGCC 3 cut(s) 409, 681, 1082
BslI CCNNNNNNNGG 3 cut(s) 713, 954, 1109
BsmAI GTCTC 2 cut(s) 212, 1218
BsmI GAATGC 1 cut(s) 900
BsnI GGCC 3 cut(s) 409, 681, 1082
Bsp1286I GDGCHC 2 cut(s) 456, 859
Bsp143I GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
Bsp19I CCATGG 2 cut(s) 860, 953
BspACI CCGC 4 cut(s) 263, 614, 676, 678
BspANI GGCC 3 cut(s) 409, 681, 1082
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 2 cut(s) 263, 678
BspLI GGNNCC 2 cut(s) 469, 858
BspMI ACCTGC 1 cut(s) 1202
BspPI GGATC 1 cut(s) 698
BspQI GCTCTTC 1 cut(s) 33
BspTI CTTAAG 1 cut(s) 1039
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 4 cut(s) 128, 343, 410, 1217
BssECI CCNNGG 9 cut(s) 365, 642, 653, 676, 860, 869, 953, 981, 1235
BssMI GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
BssT1I CCWWGG 3 cut(s) 860, 953, 1235
Bst2UI CCWGG 3 cut(s) 485, 644, 1110
Bst6I CTCTTC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 1039
BstAPI GCANNNNNTGC 2 cut(s) 622, 731
BstC8I GCNNGC 5 cut(s) 344, 472, 531, 1059, 1143
BstDEI CTNAG 2 cut(s) 84, 1000
BstDSI CCRYGG 4 cut(s) 365, 676, 860, 953
BstF5I GGATG 2 cut(s) 375, 857
BstFNI CGCG 2 cut(s) 263, 678
BstHHI GCGC 2 cut(s) 90, 263
BstKTI GATC 8 cut(s) 234, 328, 439, 591, 706, 827, 1038, 1189
BstMAI GTCTC 2 cut(s) 212, 1218
BstMBI GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 622, 731, 740
BstNI CCWGG 3 cut(s) 485, 644, 1110
BstNSI RCATGY 1 cut(s) 820
BstSCI CCNGG 3 cut(s) 483, 642, 1108
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 2 cut(s) 263, 678
BstV1I GCAGC 4 cut(s) 147, 236, 400, 752
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 3 cut(s) 409, 681, 1082
BtgI CCRYGG 4 cut(s) 365, 676, 860, 953
BtsCI GGATG 2 cut(s) 375, 857
BtsI GCAGTG 2 cut(s) 390, 891
BtsIMutI CAGTG 3 cut(s) 390, 891, 1224
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 5 cut(s) 344, 472, 531, 1059, 1143
CfoI GCGC 2 cut(s) 90, 263
Cfr13I GGNCC 3 cut(s) 657, 1080, 1214
Cfr42I CCGCGG 1 cut(s) 679
CviAII CATG 7 cut(s) 458, 566, 817, 861, 954, 1084, 1160
DdeI CTNAG 2 cut(s) 84, 1000
DpnI GATC 8 cut(s) 233, 327, 438, 590, 705, 826, 1037, 1188
DpnII GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
DriI GACNNNNNGTC 1 cut(s) 1212
Eam1104I CTCTTC 1 cut(s) 33
Eam1105I GACNNNNNGTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 860, 953, 1235
Eco24I GRGCYC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 657, 1214
Eco57I CTGAAG 2 cut(s) 509, 729
EcoRII CCWGG 3 cut(s) 483, 642, 1108
EcoT14I CCWWGG 3 cut(s) 860, 953, 1235
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 3 cut(s) 860, 953, 1235
FaeI CATG 7 cut(s) 461, 569, 820, 864, 957, 1087, 1163
FatI CATG 7 cut(s) 457, 565, 816, 860, 953, 1083, 1159
FauNDI CATATG 2 cut(s) 216, 604
FbaI TGATCA 2 cut(s) 436, 1186
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 5 cut(s) 161, 225, 389, 679, 741
FokI GGATG 2 cut(s) 382, 864
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 5 cut(s) 161, 225, 389, 679, 741
FspBI CTAG 3 cut(s) 165, 399, 875
GlaI GCGC 2 cut(s) 89, 262
GluI GCNGC 5 cut(s) 161, 225, 389, 679, 741
HaeIII GGCC 3 cut(s) 409, 681, 1082
HhaI GCGC 2 cut(s) 90, 263
Hin1II CATG 7 cut(s) 461, 569, 820, 864, 957, 1087, 1163
Hin6I GCGC 2 cut(s) 88, 261
HinP1I GCGC 2 cut(s) 88, 261
HinfI GANTC 3 cut(s) 511, 637, 865
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 670, 1174
Hpy188I TCNGA 6 cut(s) 282, 554, 654, 851, 870, 968
Hpy188III TCNNGA 2 cut(s) 96, 707
Hpy8I GTNNAC 2 cut(s) 670, 1174
HpyAV CCTTC 5 cut(s) 197, 364, 559, 704, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 622, 731, 740
HpyF3I CTNAG 2 cut(s) 84, 1000
Hsp92II CATG 7 cut(s) 461, 569, 820, 864, 957, 1087, 1163
HspAI GCGC 2 cut(s) 88, 261
Ksp22I TGATCA 2 cut(s) 436, 1186
KspI CCGCGG 1 cut(s) 679
Kzo9I GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 4 cut(s) 431, 467, 613, 862
Lsp1109I GCAGC 4 cut(s) 147, 236, 400, 752
LweI GCATC 3 cut(s) 612, 934, 1105
MaeI CTAG 3 cut(s) 165, 399, 875
MaeIII GTNAC 2 cut(s) 716, 930
MalI GATC 8 cut(s) 233, 327, 438, 590, 705, 826, 1037, 1188
MboI GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
MboII GAAGA 5 cut(s) 20, 506, 824, 971, 998
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 456, 859
MluCI AATT 3 cut(s) 594, 754, 1201
MlyI GAGTC 1 cut(s) 874
Mph1103I ATGCAT 1 cut(s) 243
MseI TTAA 5 cut(s) 696, 759, 1040, 1134, 1178
MspA1I CMGCKG 2 cut(s) 678, 743
MspCI CTTAAG 1 cut(s) 1039
MspR9I CCNGG 3 cut(s) 485, 644, 1110
Mva1269I GAATGC 1 cut(s) 900
MvaI CCWGG 3 cut(s) 485, 644, 1110
MvnI CGCG 2 cut(s) 263, 678
MwoI GCNNNNNNNGC 3 cut(s) 622, 731, 740
NcoI CCATGG 2 cut(s) 860, 953
NdeI CATATG 2 cut(s) 216, 604
NdeII GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
NlaIII CATG 7 cut(s) 461, 569, 820, 864, 957, 1087, 1163
NlaIV GGNNCC 2 cut(s) 469, 858
NmeAIII GCCGAG 2 cut(s) 253, 1006
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 511, 637
PflMI CCANNNNNTGG 1 cut(s) 954
PkrI GCNGC 5 cut(s) 162, 226, 390, 680, 742
PleI GAGTC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 873
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 483, 642, 1108
PspGI CCWGG 3 cut(s) 483, 642, 1108
PspN4I GGNNCC 2 cut(s) 469, 858
PspPI GGNCC 3 cut(s) 657, 1080, 1214
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 743
SacII CCGCGG 1 cut(s) 679
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 696, 759, 1040, 1134, 1178
SatI GCNGC 5 cut(s) 161, 225, 389, 679, 741
Sau3AI GATC 8 cut(s) 231, 325, 436, 588, 703, 824, 1035, 1186
Sau96I GGNCC 3 cut(s) 657, 1080, 1214
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 3 cut(s) 485, 644, 1110
SduI GDGCHC 2 cut(s) 456, 859
SfaNI GCATC 3 cut(s) 612, 934, 1105
Sfr303I CCGCGG 1 cut(s) 679
SgrBI CCGCGG 1 cut(s) 679
SinI GGWCC 2 cut(s) 657, 1214
SmlI CTYRAG 1 cut(s) 1039
SmoI CTYRAG 1 cut(s) 1039
Sse9I AATT 3 cut(s) 594, 754, 1201
SsiI CCGC 4 cut(s) 263, 614, 676, 678
SspMI CTAG 3 cut(s) 165, 399, 875
StyD4I CCNGG 3 cut(s) 483, 642, 1108
StyI CCWWGG 3 cut(s) 860, 953, 1235
TaqI TCGA 2 cut(s) 587, 1147
TasI AATT 3 cut(s) 594, 754, 1201
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 2 cut(s) 511, 637
Tru1I TTAA 5 cut(s) 696, 759, 1040, 1134, 1178
Tru9I TTAA 5 cut(s) 696, 759, 1040, 1134, 1178
TscAI CASTG 3 cut(s) 390, 891, 1224
TseI GCWGC 4 cut(s) 160, 224, 388, 740
TspDTI ATGAA 4 cut(s) 300, 467, 825, 1088
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 3 cut(s) 390, 891, 1224
Van91I CCANNNNNTGG 1 cut(s) 954
Vha464I CTTAAG 1 cut(s) 1039
VpaK11BI GGWCC 2 cut(s) 657, 1214
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 754
XceI RCATGY 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 3 cut(s) 165, 399, 875
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.