Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013974

Physical Location & Seq

Genomic Coordinates Reverse (-)

22750684 .. 22753609

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G214300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGAATTTGCATGTGGGTTCTTGCTCTTCTTTTTGTTTTTGGGTTTGCTTGGGAAGTTGGTGCTGATCAGAATGTGCCTACAGAGAGGATTTCAGGAAGCGCTGGTGATGTCTTGGAGGATGATCCAACTGGAAGGTTGAAAGTTTATGTTTATGAGCTGCCTAACAAATACAACAAGAAAATCCTTCAGAAAGACCCAAGATGTCTCAACCATATGTTTGCTGCTGAGATCTTCATGCATAGGTTCCTCTTATCCAGCCCGGTTAGAACCTTCAATCCTGAGGAAGCAGATTGGTTTTATACCCCTATCTACACTACTTGTGACCTTACCCCCACTGGCTTGCCGTTGCCCTTCAAATCTCCGCGGATGATGAGAAGTGCAATACAGCTCATATCTACAAACTGGCCTTATTGGAATCGAACAGAAGGAGCTGATCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGCTTTCATTACCAGGAAGAGAAAGCTATTGAACGGGGGATTCTTCCACTGCTCCAGCGTGCCACCTTGGTTCAGACCTTTGGGCAACGAAACCATGTATGCTTGAAGGAGGGTTCAATCACAATTCCTCCATATGCTCCACCACAAAAGATGCAGGCCCACCTGATTCCCCAAGAGACTCCACGGTCCATCTTCGTATACTTCCGTGGTCTATTTTATGACATTAATAATGACCCTGAAGGTGGTTACTATGCGAGAGGTGCGAGGGCAGCTGTTTGGGAGAATTTCAAGAACAATCCTCTGTTTGATATCTCCACAGACCATCCAACTACATATTATGAAGACATGCAGCGATCTATATTCTGTTTATGCCCTCTGGGTTGGGCCCCATGGAGTCCGAGGCTAGTTGAAGCAGTGGTGTTTGGTTGCATCCCTGTTATTATAGCTGACGATATTGTCTTACCCTTCGCTGATGCTATCCCATGGGAAGAAATTGGAGTTTTTCTGGCTGAGGAGGATGTCCCTAACCTGGACACAATTCTCACTTCTATTCCACCAGAAGTAATCCTCAGGAAACAAAGATTACTTGCAAATCCTTCGATGAAATGGGCAATGATGTTCCCGCAACCTGCACAACCAGGGGATGCTTTCCATCAGATACTAAACGGGCTGGCTCGCAAATTGCCCCATGCTCAAAGTGTTTACTTGAAGGGTGGTCAAAAGATTTTAAATTGGACAGAAGGTCCAGTGGGAGACTTGAAACCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

414

Amino Acids

47.21

Weight (kDa)

5.84

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27440
fragaria_vesca	FvH4_4g22570
malus_domestica	MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica	Prupe.1G214300_v2.0.a1
pyrus_communis	pycom13g11460 pycom16g11210
rosa_chinensis	RchiOBHm_Chr4g0428811
rosa_laevigata	RLG00000007123
rosa_multiflora	Rmu_sc0009525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370490
rosa_rugosa	Rorug04G0229200
rosa_samantha	Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana	Rw4G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	655, 926
Acc36I	ACCTGC	1 cut(s)	1108
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	1 cut(s)	367
AciI	CCGC	3 cut(s)	365, 367, 1094
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	6, 754
AcuI	CTGAAG	2 cut(s)	173, 729
AfeI	AGCGCT	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	713, 1000
AhdI	GACNNNNNGTC	1 cut(s)	1212
AjnI	CCWGG	3 cut(s)	483, 999, 1108
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	6 cut(s)	160, 391, 434, 497, 743, 917
AluI	AGCT	6 cut(s)	160, 391, 434, 497, 743, 917
Alw26I	GTCTC	3 cut(s)	212, 641, 1218
AlwI	GGATC	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	103
AoxI	GGCC	3 cut(s)	407, 627, 855
ApaI	GGGCCC	1 cut(s)	859
ApeKI	GCWGC	4 cut(s)	160, 224, 740, 820
ApoI	RAATTY	2 cut(s)	6, 754
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	5 cut(s)	628, 657, 855, 856, 1214
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	657, 1214
AxyI	CCTNAGG	2 cut(s)	282, 1040
BaeGI	GKGCMC	1 cut(s)	859
BanII	GRGCYC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	981
BbvI	GCAGC	4 cut(s)	147, 211, 752, 832
BccI	CCATC	3 cut(s)	668, 801, 1131
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	1050, 1084
BciT130I	CCWGG	3 cut(s)	485, 1001, 1110
BclI	TGATCA	2 cut(s)	67, 436
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	212, 641, 1218
BfaI	CTAG	1 cut(s)	875
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	1108
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	4 cut(s)	161, 225, 741, 821
BlsI	GCNGC	4 cut(s)	162, 226, 742, 822
Bme1390I	CCNGG	4 cut(s)	263, 485, 1001, 1110
Bme18I	GGWCC	2 cut(s)	657, 1214
BmeRI	GACNNNNNGTC	1 cut(s)	1212
BmgT120I	GGNCC	5 cut(s)	628, 657, 855, 856, 1214
BmiI	GGNNCC	4 cut(s)	248, 469, 857, 858
BmrFI	CCNGG	4 cut(s)	263, 485, 1001, 1110
BmsI	GCATC	4 cut(s)	612, 909, 934, 1105
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	981
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	9 cut(s)	365, 537, 653, 676, 860, 869, 953, 1109, 1235
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 1000
Bse1I	ACTGG	4 cut(s)	136, 343, 410, 1217
Bse21I	CCTNAGG	2 cut(s)	282, 1040
Bse3DI	GCAATG	1 cut(s)	1089
BseBI	CCWGG	3 cut(s)	485, 1001, 1110
BseDI	CCNNGG	9 cut(s)	365, 537, 653, 676, 860, 869, 953, 1109, 1235
BseGI	GGATG	6 cut(s)	127, 375, 793, 900, 994, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	713, 1000
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	4 cut(s)	219, 273, 972, 1054
BseNI	ACTGG	4 cut(s)	136, 343, 410, 1217
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	4 cut(s)	147, 211, 752, 832
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	409, 629, 857
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	2 cut(s)	713, 1000
BsmAI	GTCTC	3 cut(s)	212, 641, 1218
BsmFI	GGGAC	1 cut(s)	977
BsnI	GGCC	3 cut(s)	409, 629, 857
Bsp120I	GGGCCC	1 cut(s)	855
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	5 cut(s)	67, 124, 231, 436, 824
Bsp19I	CCATGG	3 cut(s)	860, 953, 1235
BspACI	CCGC	3 cut(s)	365, 367, 1094
BspANI	GGCC	3 cut(s)	409, 629, 857
BspCNI	CTCAG	4 cut(s)	220, 274, 973, 1053
BspFNI	CGCG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	4 cut(s)	248, 469, 857, 858
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	1 cut(s)	119
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	1089
BsrI	ACTGG	4 cut(s)	136, 343, 410, 1217
BssECI	CCNNGG	9 cut(s)	365, 537, 653, 676, 860, 869, 953, 1109, 1235
BssMI	GATC	5 cut(s)	67, 124, 231, 436, 824
BssNAI	GTATAC	1 cut(s)	670
BssT1I	CCWWGG	4 cut(s)	537, 860, 953, 1235
Bst1107I	GTATAC	1 cut(s)	670
Bst2UI	CCWGG	3 cut(s)	485, 1001, 1110
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	2 cut(s)	33, 483
BstC8I	GCNNGC	6 cut(s)	344, 472, 531, 627, 1143, 1147
BstDEI	CTNAG	4 cut(s)	228, 282, 981, 1040
BstDSI	CCRYGG	6 cut(s)	365, 653, 676, 860, 953, 1235
BstF5I	GGATG	6 cut(s)	127, 375, 793, 900, 994, 1120
BstFNI	CGCG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	70, 127, 234, 439, 827
BstMAI	GTCTC	3 cut(s)	212, 641, 1218
BstMBI	GATC	5 cut(s)	67, 124, 231, 436, 824
BstMWI	GCNNNNNNNGC	2 cut(s)	731, 740
BstNI	CCWGG	3 cut(s)	485, 1001, 1110
BstNSI	RCATGY	2 cut(s)	16, 820
BstSCI	CCNGG	4 cut(s)	261, 483, 999, 1108
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	859
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	4 cut(s)	147, 211, 752, 832
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	670
Bsu36I	CCTNAGG	2 cut(s)	282, 1040
BsuRI	GGCC	3 cut(s)	409, 629, 857
BtgI	CCRYGG	6 cut(s)	365, 653, 676, 860, 953, 1235
BtsCI	GGATG	6 cut(s)	127, 375, 793, 900, 994, 1120
BtsI	GCAGTG	2 cut(s)	518, 891
BtsIMutI	CAGTG	4 cut(s)	336, 518, 891, 1224
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	6 cut(s)	344, 472, 531, 627, 1143, 1147
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	5 cut(s)	628, 657, 855, 856, 1214
Cfr42I	CCGCGG	1 cut(s)	368
CviAII	CATG	9 cut(s)	13, 238, 458, 566, 817, 861, 954, 1160, 1236
DdeI	CTNAG	4 cut(s)	228, 282, 981, 1040
DpnI	GATC	5 cut(s)	69, 126, 233, 438, 826
DpnII	GATC	5 cut(s)	67, 124, 231, 436, 824
DraI	TTTAAA	1 cut(s)	1200
DrdI	GACNNNNNNGTC	2 cut(s)	655, 926
DriI	GACNNNNNGTC	1 cut(s)	1212
DseDI	GACNNNNNNGTC	2 cut(s)	655, 926
Eam1104I	CTCTTC	2 cut(s)	33, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	1212
EarI	CTCTTC	2 cut(s)	33, 483
Eco130I	CCWWGG	4 cut(s)	537, 860, 953, 1235
Eco24I	GRGCYC	1 cut(s)	859
Eco32I	GATATC	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	657, 1214
Eco47III	AGCGCT	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	173, 729
Eco81I	CCTNAGG	2 cut(s)	282, 1040
EcoO109I	RGGNCCY	1 cut(s)	856
EcoRII	CCWGG	3 cut(s)	483, 999, 1108
EcoRV	GATATC	1 cut(s)	781
EcoT14I	CCWWGG	4 cut(s)	537, 860, 953, 1235
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	4 cut(s)	537, 860, 953, 1235
FaeI	CATG	9 cut(s)	16, 241, 461, 569, 820, 864, 957, 1163, 1239
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	9 cut(s)	12, 237, 457, 565, 816, 860, 953, 1159, 1235
FauI	CCCGC	1 cut(s)	1101
FauNDI	CATATG	2 cut(s)	216, 604
FbaI	TGATCA	2 cut(s)	67, 436
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	161, 225, 741, 821
FokI	GGATG	6 cut(s)	134, 382, 780, 887, 1001, 1127
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	4 cut(s)	161, 225, 741, 821
FspBI	CTAG	1 cut(s)	875
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	161, 225, 741, 821
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	409, 629, 857
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	9 cut(s)	16, 241, 461, 569, 820, 864, 957, 1163, 1239
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	5 cut(s)	418, 511, 637, 649, 865
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	670, 1174
Hpy188I	TCNGA	5 cut(s)	72, 192, 546, 870, 1128
Hpy188III	TCNNGA	5 cut(s)	96, 281, 458, 760, 1042
Hpy8I	GTNNAC	2 cut(s)	670, 1174
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4V	TGCA	8 cut(s)	12, 241, 383, 625, 820, 900, 1061, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	731, 740
HpyF3I	CTNAG	4 cut(s)	228, 282, 981, 1040
Hsp92II	CATG	9 cut(s)	16, 241, 461, 569, 820, 864, 957, 1163, 1239
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	67, 436
KspI	CCGCGG	1 cut(s)	368
Kzo9I	GATC	5 cut(s)	67, 124, 231, 436, 824
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	4 cut(s)	431, 467, 528, 613
Lsp1109I	GCAGC	4 cut(s)	147, 211, 752, 832
LweI	GCATC	4 cut(s)	612, 909, 934, 1105
MaeI	CTAG	1 cut(s)	875
MaeIII	GTNAC	2 cut(s)	323, 716
MalI	GATC	5 cut(s)	69, 126, 233, 438, 826
MboI	GATC	5 cut(s)	67, 124, 231, 436, 824
MboII	GAAGA	7 cut(s)	20, 226, 500, 506, 655, 824, 971
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	859
MluCI	AATT	7 cut(s)	6, 594, 754, 963, 1008, 1151, 1201
MlyI	GAGTC	2 cut(s)	643, 874
MmeI	TCCRAC	2 cut(s)	152, 821
Mph1103I	ATGCAT	1 cut(s)	243
MseI	TTAA	2 cut(s)	696, 1199
MspA1I	CMGCKG	2 cut(s)	367, 743
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	4 cut(s)	263, 485, 1001, 1110
MvaI	CCWGG	3 cut(s)	485, 1001, 1110
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	2 cut(s)	731, 740
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	3 cut(s)	860, 953, 1235
NdeI	CATATG	2 cut(s)	216, 604
NdeII	GATC	5 cut(s)	67, 124, 231, 436, 824
NlaIII	CATG	9 cut(s)	16, 241, 461, 569, 820, 864, 957, 1163, 1239
NlaIV	GGNNCC	4 cut(s)	248, 469, 857, 858
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	2 cut(s)	16, 820
PagI	TCATGA	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	418, 511, 637
PkrI	GCNGC	4 cut(s)	162, 226, 742, 822
PleI	GAGTC	2 cut(s)	643, 873
PpsI	GAGTC	2 cut(s)	643, 873
PshBI	ATTAAT	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	483, 999, 1108
PspGI	CCWGG	3 cut(s)	483, 999, 1108
PspN4I	GGNNCC	4 cut(s)	248, 469, 857, 858
PspOMI	GGGCCC	1 cut(s)	855
PspPI	GGNCC	5 cut(s)	628, 657, 855, 856, 1214
PsuI	RGATCY	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	743
SacII	CCGCGG	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	696, 1199
SatI	GCNGC	4 cut(s)	161, 225, 741, 821
Sau3AI	GATC	5 cut(s)	67, 124, 231, 436, 824
Sau96I	GGNCC	5 cut(s)	628, 657, 855, 856, 1214
SchI	GAGTC	2 cut(s)	643, 874
ScrFI	CCNGG	4 cut(s)	263, 485, 1001, 1110
SduI	GDGCHC	1 cut(s)	859
SfaNI	GCATC	4 cut(s)	612, 909, 934, 1105
SfcI	CTRYAG	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	657, 1214
Sse9I	AATT	7 cut(s)	6, 594, 754, 963, 1008, 1151, 1201
SsiI	CCGC	3 cut(s)	365, 367, 1094
SspMI	CTAG	1 cut(s)	875
StyD4I	CCNGG	4 cut(s)	261, 483, 999, 1108
StyI	CCWWGG	4 cut(s)	537, 860, 953, 1235
TaaI	ACNGT	1 cut(s)	657
TaqI	TCGA	2 cut(s)	421, 1070
TasI	AATT	7 cut(s)	6, 594, 754, 963, 1008, 1151, 1201
TfiI	GAWTC	3 cut(s)	418, 511, 637
Tru1I	TTAA	2 cut(s)	696, 1199
Tru9I	TTAA	2 cut(s)	696, 1199
TscAI	CASTG	4 cut(s)	343, 525, 891, 1224
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	4 cut(s)	160, 224, 740, 820
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	226, 467, 825, 1088
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	4 cut(s)	343, 525, 891, 1224
VpaK11BI	GGWCC	2 cut(s)	657, 1214
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	2 cut(s)	6, 754
XceI	RCATGY	2 cut(s)	16, 820
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	1 cut(s)	875
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.